Rroxscaffold_4G00297000

Possible catecholamine-binding domain present in a variety of eukaryotic proteins.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013451
Physical Location & Seq
Forward (+)
16993662 .. 16995727
2066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297000.1

Sequence Viewer

Length: 1107 bp
ATGGCGAATTCGGGGACTTGGCTTTTGGTTTTGAGGTTATGTGCTCTTCTCCTTTTCTTGGAGGCCAAGGTTTTTGTTTTGGGTGGTGATAATAGTAATGTCCAGGGTGGTAATAGTATAGATGGGTCTGGTGGAGTATCCGAGAATTGTGTTAATGATCTGGCTAGTTTCATGCCACCACCATATGGTAATTCATCTGATATAGTCTGCAGGCCTATTTGGAACACTTTTGTTTTGAGGTACACCCAAACTGAAGATCATGTAATGAACATAATATTATCTGCTGTGTACACCACTGGGTGGGTAGGAATGGGATTTTCCAGAGATGGATTGATGGTTGGTTCAAGTGCCATAGTGGGATGGGTTAATAGAAAAGGCCATGCAAGAATTAAGCAATACTATTTGCAAGGTTCAAAGTCTTCGCGAGTTATACCAGACAAAGGTGAATTGCCACTTACTGGTATTCCTGCTACTGTTGTGCTTCATGGCCCTAGAATTTACTTGGCATTCCAGTTGAAATTCCAAGCTCATCTTTCTCGGCAACCTCTTATCTTGGCCGTTGGAAGTGGTTACCCCAAGCACAACAACCACTTAACAAAACACACCGATAAAACCACCATCAAGTTCGACTTCTCTGCAGGTTCTGCATCTGAGGCACCTAGTGATTTTGGGCAGATGAAGAAGAACCATGGAATATTGGCCATATTTGGATGGGGTATAATCATTCCTTTGGGGGCAATTGTCCCAAGATACTTCAAGCACAAGGACCCCTTGTGGTACTATCTCCATTCAATTATTCAATTTGTGGGATTTGTCATTGGCCTTGCAGCAGTGGTACTTGGACAAAAACTCTATAATAAAATAGATGCCAATTTCCAAACACATAGAGCAATTGGAATCTTTGTTCTTGTGCTTGGTATCCTTCAGATATTGGCATTCTTTCTAAGACCAAGCAAGGATGCCAAGATTAGAAAGTACTGGAATTGGTACCACCACTGGTTTGGAAGGTTTGCAATCTTCTTTGCAGCTGTGAACATAGTTCTGGGGATCAACATTGGAGCTGCAGGCATTGAATGGAAGATTAGTTATGGATTTTTCTCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DOMON

Protein Analysis

368

Amino Acids

40.78

Weight (kDa)

9.7

Isoelectric Point (pI)

25.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOMON PF03351 80 - 143 4.9e-09 DOMON domain
Cytochrom_B561 PF03188 230 - 350 1.6e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013451)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61750 AT3G61750
fragaria_vesca FvH4_7g16430
malus_domestica MD01G1080600.v1.1 MD07G1149500.v1.1
prunus_persica Prupe.2G188200_v2.0.a1
pyrus_communis pycom01g10870 pycom07g14810
rosa_chinensis RchiOBHm_Chr1g0359441
rosa_laevigata RLG00000027869
rosa_multiflora Rmu_ssc0000358.1_g000010
rosa_roxburghii Rroxscaffold_4G00297000
rosa_rugosa Rorug01G0271400
rosa_samantha Rh1AG284700 Rh1BG250700 Rh1CG268800 Rh1DG279800
rosa_wichuraiana Rw1G025290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 629
Acc65I GGTACC 1 cut(s) 987
AccB1I GGYRCC 2 cut(s) 655, 987
AccB7I CCANNNNNTGG 3 cut(s) 185, 300, 458
AccII CGCG 1 cut(s) 424
AclWI GGATC 1 cut(s) 1055
AcoI YGGCCR 2 cut(s) 555, 699
AcsI RAATTY 3 cut(s) 7, 495, 518
AcuI CTGAAG 2 cut(s) 273, 908
AdeI CACNNNGTG 2 cut(s) 300, 662
AfaI GTAC 6 cut(s) 242, 290, 779, 837, 977, 989
AfiI CCNNNNNNNGG 5 cut(s) 58, 185, 300, 440, 458
AgsI TTSAA 7 cut(s) 345, 414, 517, 757, 792, 800, 1073
AjnI CCWGG 1 cut(s) 102
AloI GAACNNNNNNTCC 2 cut(s) 888, 920
AluBI AGCT 3 cut(s) 527, 1028, 1061
AluI AGCT 3 cut(s) 527, 1028, 1061
Alw21I GWGCWC 1 cut(s) 46
AlwI GGATC 1 cut(s) 1055
AlwNI CAGNNNCTG 1 cut(s) 644
AoxI GGCC 7 cut(s) 63, 212, 376, 487, 555, 699, 820
ApeKI GCWGC 3 cut(s) 827, 1025, 1061
ApoI RAATTY 3 cut(s) 7, 495, 518
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
Asp718I GGTACC 1 cut(s) 987
AspS9I GGNCC 2 cut(s) 488, 766
AsuHPI GGTGA 2 cut(s) 98, 455
AvaII GGWCC 1 cut(s) 766
BalI TGGCCA 1 cut(s) 701
BanI GGYRCC 2 cut(s) 655, 987
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 3 cut(s) 839, 1037, 1048
BccI CCATC 6 cut(s) 116, 320, 328, 354, 626, 705
BceAI ACGGC 1 cut(s) 542
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 1 cut(s) 104
BciVI GTATCC 2 cut(s) 148, 929
BfaI CTAG 3 cut(s) 165, 492, 660
BfmI CTRYAG 3 cut(s) 208, 636, 1062
BfuAI ACCTGC 1 cut(s) 629
BfuI GTATCC 2 cut(s) 148, 929
BisI GCNGC 3 cut(s) 828, 1026, 1062
BlsI GCNGC 3 cut(s) 829, 1027, 1063
BmcAI AGTACT 1 cut(s) 977
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 766
BmgT120I GGNCC 2 cut(s) 488, 766
BmiI GGNNCC 3 cut(s) 657, 768, 989
BmrFI CCNGG 1 cut(s) 104
BmrI ACTGGG 1 cut(s) 306
BmsI GCATC 3 cut(s) 656, 856, 949
BmuI ACTGGG 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 411
BsaJI CCNNGG 3 cut(s) 66, 103, 688
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 185, 300, 440, 458
Bse1I ACTGG 5 cut(s) 301, 463, 511, 983, 1001
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 3 cut(s) 66, 103, 688
BseGI GGATG 3 cut(s) 365, 716, 964
BseLI CCNNNNNNNGG 5 cut(s) 58, 185, 300, 440, 458
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 5 cut(s) 301, 463, 511, 983, 1001
BseXI GCAGC 3 cut(s) 839, 1037, 1048
Bsh1236I CGCG 1 cut(s) 424
BshFI GGCC 7 cut(s) 65, 214, 378, 489, 557, 701, 822
BshNI GGYRCC 2 cut(s) 655, 987
BsiHKAI GWGCWC 1 cut(s) 46
BslFI GGGAC 2 cut(s) 28, 728
BslI CCNNNNNNNGG 5 cut(s) 58, 185, 300, 440, 458
BsmFI GGGAC 2 cut(s) 28, 728
BsmI GAATGC 2 cut(s) 506, 935
BsnI GGCC 7 cut(s) 65, 214, 378, 489, 557, 701, 822
Bsp1286I GDGCHC 1 cut(s) 46
Bsp1407I TGTACA 1 cut(s) 288
Bsp143I GATC 3 cut(s) 157, 256, 1047
Bsp19I CCATGG 1 cut(s) 688
Bsp68I TCGCGA 1 cut(s) 424
BspANI GGCC 7 cut(s) 65, 214, 378, 489, 557, 701, 822
BspCNI CTCAG 1 cut(s) 643
BspFNI CGCG 1 cut(s) 424
BspLI GGNNCC 3 cut(s) 657, 768, 989
BspMAI CTGCAG 3 cut(s) 212, 640, 1066
BspMI ACCTGC 1 cut(s) 629
BspPI GGATC 1 cut(s) 1055
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 655, 987
BsrGI TGTACA 1 cut(s) 288
BsrI ACTGG 5 cut(s) 301, 463, 511, 983, 1001
BssECI CCNNGG 3 cut(s) 66, 103, 688
BssMI GATC 3 cut(s) 157, 256, 1047
BssT1I CCWWGG 2 cut(s) 66, 688
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 644
BstAUI TGTACA 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 212, 1066
BstDEI CTNAG 3 cut(s) 651, 944, 1099
BstDSI CCRYGG 1 cut(s) 688
BstEII GGTNACC 1 cut(s) 569
BstF5I GGATG 3 cut(s) 365, 716, 964
BstFNI CGCG 1 cut(s) 424
BstKTI GATC 3 cut(s) 160, 259, 1050
BstMBI GATC 3 cut(s) 157, 256, 1047
BstMWI GCNNNNNNNGC 2 cut(s) 644, 653
BstNI CCWGG 1 cut(s) 104
BstPI GGTNACC 1 cut(s) 569
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 3 cut(s) 208, 636, 1062
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 3 cut(s) 839, 1037, 1048
BstV2I GAAGAC 1 cut(s) 411
BstXI CCANNNNNNTGG 1 cut(s) 1001
BsuI GTATCC 2 cut(s) 148, 929
BsuRI GGCC 7 cut(s) 65, 214, 378, 489, 557, 701, 822
BtgI CCRYGG 1 cut(s) 688
BtsCI GGATG 3 cut(s) 365, 716, 964
BtsI GCAGTG 1 cut(s) 837
BtsIMutI CAGTG 3 cut(s) 294, 837, 994
BtuMI TCGCGA 1 cut(s) 424
BveI ACCTGC 1 cut(s) 629
Cac8I GCNNGC 2 cut(s) 212, 1066
CaiI CAGNNNCTG 1 cut(s) 644
Cfr13I GGNCC 2 cut(s) 488, 766
Csp6I GTAC 6 cut(s) 241, 289, 778, 836, 976, 988
CviAII CATG 5 cut(s) 172, 260, 380, 485, 689
CviQI GTAC 6 cut(s) 241, 289, 778, 836, 976, 988
DdeI CTNAG 3 cut(s) 651, 944, 1099
DpnI GATC 3 cut(s) 159, 258, 1049
DpnII GATC 3 cut(s) 157, 256, 1047
DraIII CACNNNGTG 2 cut(s) 300, 662
EaeI YGGCCR 2 cut(s) 555, 699
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 66, 688
Eco147I AGGCCT 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 766
Eco57I CTGAAG 2 cut(s) 273, 908
Eco91I GGTNACC 1 cut(s) 569
EcoO109I RGGNCCY 1 cut(s) 766
EcoO65I GGTNACC 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 2 cut(s) 66, 688
ErhI CCWWGG 2 cut(s) 66, 688
FaeI CATG 5 cut(s) 175, 263, 383, 488, 692
FalI AAGNNNNNCTT 6 cut(s) 516, 548, 614, 646, 755, 787
FaqI GGGAC 2 cut(s) 28, 728
FatI CATG 5 cut(s) 171, 259, 379, 484, 688
FauNDI CATATG 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 828, 1026, 1062
FokI GGATG 3 cut(s) 372, 723, 971
Fsp4HI GCNGC 3 cut(s) 828, 1026, 1062
FspBI CTAG 3 cut(s) 165, 492, 660
GluI GCNGC 3 cut(s) 828, 1026, 1062
HaeIII GGCC 7 cut(s) 65, 214, 378, 489, 557, 701, 822
Hin1II CATG 5 cut(s) 175, 263, 383, 488, 692
HinfI GANTC 1 cut(s) 897
HphI GGTGA 2 cut(s) 98, 455
Hpy166II GTNNAC 4 cut(s) 243, 289, 291, 1033
Hpy188I TCNGA 4 cut(s) 142, 199, 652, 927
Hpy188III TCNNGA 2 cut(s) 321, 423
Hpy8I GTNNAC 4 cut(s) 243, 289, 291, 1033
HpyAV CCTTC 2 cut(s) 932, 999
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4V TGCA 9 cut(s) 210, 383, 406, 638, 647, 827, 1013, 1025, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 644, 653
HpyF3I CTNAG 3 cut(s) 651, 944, 1099
Hsp92II CATG 5 cut(s) 175, 263, 383, 488, 692
KpnI GGTACC 1 cut(s) 991
Kzo9I GATC 3 cut(s) 157, 256, 1047
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 1058
Lsp1109I GCAGC 3 cut(s) 839, 1037, 1048
LweI GCATC 3 cut(s) 656, 856, 949
MaeI CTAG 3 cut(s) 165, 492, 660
MaeIII GTNAC 1 cut(s) 569
MalI GATC 3 cut(s) 159, 258, 1049
MboI GATC 3 cut(s) 157, 256, 1047
MboII GAAGA 7 cut(s) 38, 266, 411, 691, 694, 1009, 1090
MfeI CAATTG 2 cut(s) 738, 891
MhlI GDGCHC 1 cut(s) 46
MlsI TGGCCA 1 cut(s) 701
MluNI TGGCCA 1 cut(s) 701
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 5 cut(s) 27, 55, 231, 555, 646
Mox20I TGGCCA 1 cut(s) 701
MscI TGGCCA 1 cut(s) 701
MseI TTAA 4 cut(s) 153, 366, 390, 593
Msp20I TGGCCA 1 cut(s) 701
MspA1I CMGCKG 1 cut(s) 1028
MspR9I CCNGG 1 cut(s) 104
MunI CAATTG 2 cut(s) 738, 891
Mva1269I GAATGC 2 cut(s) 506, 935
MvaI CCWGG 1 cut(s) 104
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 2 cut(s) 644, 653
NcoI CCATGG 1 cut(s) 688
NdeI CATATG 1 cut(s) 184
NdeII GATC 3 cut(s) 157, 256, 1047
NlaIII CATG 5 cut(s) 175, 263, 383, 488, 692
NlaIV GGNNCC 3 cut(s) 657, 768, 989
NmeAIII GCCGAG 1 cut(s) 517
NruI TCGCGA 1 cut(s) 424
PceI AGGCCT 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 51
PctI GAATGC 2 cut(s) 506, 935
PfeI GAWTC 1 cut(s) 897
PflMI CCANNNNNTGG 3 cut(s) 185, 300, 458
PkrI GCNGC 3 cut(s) 829, 1027, 1063
PpuMI RGGWCCY 1 cut(s) 766
Psp5II RGGWCCY 1 cut(s) 766
Psp6I CCWGG 1 cut(s) 102
PspEI GGTNACC 1 cut(s) 569
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 3 cut(s) 657, 768, 989
PspPI GGNCC 2 cut(s) 488, 766
PspPPI RGGWCCY 1 cut(s) 766
PstI CTGCAG 3 cut(s) 212, 640, 1066
PstNI CAGNNNCTG 1 cut(s) 644
PvuII CAGCTG 1 cut(s) 1028
RruI TCGCGA 1 cut(s) 424
RsaI GTAC 6 cut(s) 242, 290, 779, 837, 977, 989
RsaNI GTAC 6 cut(s) 241, 289, 778, 836, 976, 988
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 4 cut(s) 153, 366, 390, 593
SatI GCNGC 3 cut(s) 828, 1026, 1062
Sau3AI GATC 3 cut(s) 157, 256, 1047
Sau96I GGNCC 2 cut(s) 488, 766
ScaI AGTACT 1 cut(s) 977
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 3 cut(s) 656, 856, 949
SfcI CTRYAG 3 cut(s) 208, 636, 1062
SinI GGWCC 1 cut(s) 766
SseBI AGGCCT 1 cut(s) 214
SspI AATATT 2 cut(s) 276, 696
SspMI CTAG 3 cut(s) 165, 492, 660
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 2 cut(s) 66, 688
TaaI ACNGT 1 cut(s) 475
TaqI TCGA 1 cut(s) 627
TatI WGTACW 2 cut(s) 288, 975
TfiI GAWTC 1 cut(s) 897
Tru1I TTAA 4 cut(s) 153, 366, 390, 593
Tru9I TTAA 4 cut(s) 153, 366, 390, 593
TscAI CASTG 3 cut(s) 301, 837, 1001
TseI GCWGC 3 cut(s) 827, 1025, 1061
TspDTI ATGAA 5 cut(s) 160, 183, 281, 473, 692
TspRI CASTG 3 cut(s) 301, 837, 1001
Van91I CCANNNNNTGG 3 cut(s) 185, 300, 458
VpaK11BI GGWCC 1 cut(s) 766
XapI RAATTY 3 cut(s) 7, 495, 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 998
XspI CTAG 3 cut(s) 165, 492, 660
ZrmI AGTACT 1 cut(s) 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.