Rw1G025290

Possible catecholamine-binding domain present in a variety of eukaryotic proteins.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0013451
Physical Location & Seq
Reverse (-)
51865439 .. 51867212
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G025290.1

Sequence Viewer

Length: 1206 bp
ATGGCAAATTCGGGGACTTGGCTTTTGGTTTTGAAGTTATGTGCTCTTCTCCTTTTCTTGGAGACCAAGGTTTTTGTTTTGGGTGGTGATGATAGTAATGTCCAGGGTGGTAATAGTATAGATGGGTCTGGTGGAGTATCAGAGATTTGTGTTAATGATCTGGCTAGTTTCATGCCACCACCATATGGTAATTCATCTGATATAGTCTGCAGGCCTATTTGGAACACTTTTGTTTTGAGGTATACCCAAACTGAAGATCATGTAATGAACATAATATTATCTGCTGTGTACACCACTGGGTGGGTAGGAATGGGATTTTCCAGAGATGGATTGATGGTTGGTTCAAGTGCCATAGTGGGATGGGTTAATAGAAAAGGCCATGCAAGAATTAAGCAATACTATTTGCAAGGTTCAAAGTCTTCGCGAGTTATACCAGACAAAGGTGAATTGCCACTTACTGGTATTCCTGCTACTGTTGTGCTTCATGGCCCTAGGATTTACTTGGCATTCCAGTTGAAATTCCAAGCTCATCTTTCTCGGCAACCTCTTATCTTGGCCGTTGGAAGCGGTTACCCCAAGCACAACAACCACTTAACAAAACACACCGATAAAACCACCATCAAGTTCGACTTCTCTGCAGGTTCTGCATCTGAGGCACCTAGTGATTTTGGGCAGATGAAGAAGAACCATGGAATATTGGCCATATTTGGATTTGGTATAATCATTCCTTTGGGGGCAATTGTTCCAAGATACTTCAAGCACAAGGACCCCTTGTGGTACTATCTCCATTCAATTATTCAATTTGTGGGATTTGTCATTGGCCTTGCAGCAGTGGTACTTGGACAAAAACTCTATAATAAAATAGACGCCAATTTCCAAACACATAGAGCAATTGGAATCTTTGTTCTTGTGCTTAGTATCCTTCAGATATTGGCATTCTTTCTAAGACCAAGCAAGGATGCCAAGATTAGAAAGTACTGGAATTGGTACCACCACTGGTTTGGAAGGTTTGCAATCTTCTTTGCAGCTGTGAACATTGTTCTAGGGATCAACATTGGAGCTGCAGGCATTGAATGGAAGATTAGTTATGGATTTTTCCTCAGCATAATTCTTATCGCAGTCATTGTTTTAGAAGTTTTGGCAAGGATGAGGAGGACAGAAAATAAGAATATGCCTCCAAACTTCCAAATGAATCCGGTTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000293 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0016722 GO:0016723 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DOMON

Protein Analysis

401

Amino Acids

44.61

Weight (kDa)

9.72

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOMON PF03351 80 - 143 5.7e-09 DOMON domain
Cytochrom_B561 PF03188 230 - 350 2.3e-08 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013451)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61750 AT3G61750
fragaria_vesca FvH4_7g16430
malus_domestica MD01G1080600.v1.1 MD07G1149500.v1.1
prunus_persica Prupe.2G188200_v2.0.a1
pyrus_communis pycom01g10870 pycom07g14810
rosa_chinensis RchiOBHm_Chr1g0359441
rosa_laevigata RLG00000027869
rosa_multiflora Rmu_ssc0000358.1_g000010
rosa_roxburghii Rroxscaffold_4G00297000
rosa_rugosa Rorug01G0271400
rosa_samantha Rh1AG284700 Rh1BG250700 Rh1CG268800 Rh1DG279800
rosa_wichuraiana Rw1G025290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 629
Acc65I GGTACC 1 cut(s) 987
AccB1I GGYRCC 2 cut(s) 655, 987
AccB7I CCANNNNNTGG 3 cut(s) 185, 300, 458
AccI GTMKAC 1 cut(s) 242
AccII CGCG 1 cut(s) 424
AciI CCGC 1 cut(s) 567
AclWI GGATC 1 cut(s) 1055
AcoI YGGCCR 2 cut(s) 555, 699
AcsI RAATTY 2 cut(s) 7, 518
AcuI CTGAAG 2 cut(s) 273, 908
AcyI GRCGYC 1 cut(s) 867
AdeI CACNNNGTG 2 cut(s) 300, 662
AfaI GTAC 5 cut(s) 290, 779, 837, 977, 989
AfiI CCNNNNNNNGG 5 cut(s) 58, 185, 300, 440, 458
AgsI TTSAA 8 cut(s) 34, 345, 414, 517, 757, 792, 800, 1073
AjnI CCWGG 1 cut(s) 102
AloI GAACNNNNNNTCC 2 cut(s) 888, 920
AluBI AGCT 3 cut(s) 527, 1028, 1061
AluI AGCT 3 cut(s) 527, 1028, 1061
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 1055
AlwNI CAGNNNCTG 1 cut(s) 644
AoxI GGCC 6 cut(s) 212, 376, 487, 555, 699, 820
ApeKI GCWGC 3 cut(s) 827, 1025, 1061
ApoI RAATTY 2 cut(s) 7, 518
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
Asp718I GGTACC 1 cut(s) 987
AspA2I CCTAGG 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 488, 766
AsuHPI GGTGA 2 cut(s) 98, 455
AvaII GGWCC 1 cut(s) 766
AvrII CCTAGG 1 cut(s) 491
BalI TGGCCA 1 cut(s) 701
BanI GGYRCC 2 cut(s) 655, 987
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 1100
BbvI GCAGC 3 cut(s) 839, 1037, 1048
BccI CCATC 5 cut(s) 116, 320, 328, 354, 626
BceAI ACGGC 1 cut(s) 542
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 1 cut(s) 104
BciVI GTATCC 1 cut(s) 929
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 4 cut(s) 165, 492, 660, 1043
BfmI CTRYAG 3 cut(s) 208, 636, 1062
BfuAI ACCTGC 1 cut(s) 629
BfuI GTATCC 1 cut(s) 929
BisI GCNGC 3 cut(s) 828, 1026, 1062
BlnI CCTAGG 1 cut(s) 491
BlsI GCNGC 3 cut(s) 829, 1027, 1063
BmcAI AGTACT 1 cut(s) 977
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 766
BmgT120I GGNCC 2 cut(s) 488, 766
BmiI GGNNCC 4 cut(s) 657, 768, 989, 1200
BmrFI CCNGG 1 cut(s) 104
BmrI ACTGGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 656, 949
BmuI ACTGGG 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 1100
BsaHI GRCGYC 1 cut(s) 867
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 4 cut(s) 66, 103, 491, 688
BsaWI WCCGGW 1 cut(s) 1195
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 185, 300, 440, 458
Bse1I ACTGG 5 cut(s) 301, 463, 511, 983, 1001
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 4 cut(s) 66, 103, 491, 688
BseGI GGATG 3 cut(s) 365, 964, 1152
BseLI CCNNNNNNNGG 5 cut(s) 58, 185, 300, 440, 458
BseMII CTCAG 2 cut(s) 642, 1114
BseNI ACTGG 5 cut(s) 301, 463, 511, 983, 1001
BseRI GAGGAG 1 cut(s) 1165
BseXI GCAGC 3 cut(s) 839, 1037, 1048
Bsh1236I CGCG 1 cut(s) 424
BshFI GGCC 6 cut(s) 214, 378, 489, 557, 701, 822
BshNI GGYRCC 2 cut(s) 655, 987
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 1 cut(s) 1196
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 5 cut(s) 58, 185, 300, 440, 458
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 28
BsmI GAATGC 2 cut(s) 506, 935
BsnI GGCC 6 cut(s) 214, 378, 489, 557, 701, 822
Bso31I GGTCTC 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 46
Bsp1407I TGTACA 1 cut(s) 288
Bsp143I GATC 3 cut(s) 157, 256, 1047
Bsp19I CCATGG 1 cut(s) 688
Bsp68I TCGCGA 1 cut(s) 424
BspACI CCGC 1 cut(s) 567
BspANI GGCC 6 cut(s) 214, 378, 489, 557, 701, 822
BspCNI CTCAG 2 cut(s) 643, 1113
BspFNI CGCG 1 cut(s) 424
BspLI GGNNCC 4 cut(s) 657, 768, 989, 1200
BspMAI CTGCAG 3 cut(s) 212, 640, 1066
BspMI ACCTGC 1 cut(s) 629
BspPI GGATC 1 cut(s) 1055
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 655, 987
BspTNI GGTCTC 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 288
BsrI ACTGG 5 cut(s) 301, 463, 511, 983, 1001
BssECI CCNNGG 4 cut(s) 66, 103, 491, 688
BssMI GATC 3 cut(s) 157, 256, 1047
BssNAI GTATAC 1 cut(s) 243
BssNI GRCGYC 1 cut(s) 867
BssT1I CCWWGG 3 cut(s) 66, 491, 688
Bst1107I GTATAC 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 867
BstAPI GCANNNNNTGC 1 cut(s) 644
BstAUI TGTACA 1 cut(s) 288
BstC8I GCNNGC 2 cut(s) 212, 1066
BstDEI CTNAG 4 cut(s) 651, 914, 944, 1100
BstDSI CCRYGG 1 cut(s) 688
BstEII GGTNACC 1 cut(s) 569
BstF5I GGATG 3 cut(s) 365, 964, 1152
BstFNI CGCG 1 cut(s) 424
BstKTI GATC 3 cut(s) 160, 259, 1050
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 3 cut(s) 157, 256, 1047
BstMWI GCNNNNNNNGC 2 cut(s) 644, 653
BstNI CCWGG 1 cut(s) 104
BstPI GGTNACC 1 cut(s) 569
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 3 cut(s) 208, 636, 1062
BstUI CGCG 1 cut(s) 424
BstV1I GCAGC 3 cut(s) 839, 1037, 1048
BstV2I GAAGAC 1 cut(s) 411
BstXI CCANNNNNNTGG 1 cut(s) 1001
BstZ17I GTATAC 1 cut(s) 243
BsuI GTATCC 1 cut(s) 929
BsuRI GGCC 6 cut(s) 214, 378, 489, 557, 701, 822
BtgI CCRYGG 1 cut(s) 688
BtsCI GGATG 3 cut(s) 365, 964, 1152
BtsI GCAGTG 1 cut(s) 837
BtsIMutI CAGTG 3 cut(s) 294, 837, 994
BtuMI TCGCGA 1 cut(s) 424
BveI ACCTGC 1 cut(s) 629
Cac8I GCNNGC 2 cut(s) 212, 1066
CaiI CAGNNNCTG 1 cut(s) 644
Cfr13I GGNCC 2 cut(s) 488, 766
CseI GACGC 1 cut(s) 875
Csp6I GTAC 5 cut(s) 289, 778, 836, 976, 988
CviAII CATG 5 cut(s) 172, 260, 380, 485, 689
CviQI GTAC 5 cut(s) 289, 778, 836, 976, 988
DdeI CTNAG 4 cut(s) 651, 914, 944, 1100
DpnI GATC 3 cut(s) 159, 258, 1049
DpnII GATC 3 cut(s) 157, 256, 1047
DraIII CACNNNGTG 2 cut(s) 300, 662
EaeI YGGCCR 2 cut(s) 555, 699
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 3 cut(s) 66, 491, 688
Eco147I AGGCCT 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 766
Eco57I CTGAAG 2 cut(s) 273, 908
Eco91I GGTNACC 1 cut(s) 569
EcoO109I RGGNCCY 1 cut(s) 766
EcoO65I GGTNACC 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 3 cut(s) 66, 491, 688
ErhI CCWWGG 3 cut(s) 66, 491, 688
FaeI CATG 5 cut(s) 175, 263, 383, 488, 692
FalI AAGNNNNNCTT 6 cut(s) 516, 548, 614, 646, 755, 787
FaqI GGGAC 1 cut(s) 28
FatI CATG 5 cut(s) 171, 259, 379, 484, 688
FauNDI CATATG 1 cut(s) 184
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 3 cut(s) 828, 1026, 1062
FokI GGATG 3 cut(s) 372, 971, 1159
Fsp4HI GCNGC 3 cut(s) 828, 1026, 1062
FspBI CTAG 4 cut(s) 165, 492, 660, 1043
GluI GCNGC 3 cut(s) 828, 1026, 1062
HaeIII GGCC 6 cut(s) 214, 378, 489, 557, 701, 822
HapII CCGG 1 cut(s) 1196
HgaI GACGC 1 cut(s) 875
Hin1I GRCGYC 1 cut(s) 867
Hin1II CATG 5 cut(s) 175, 263, 383, 488, 692
HinfI GANTC 2 cut(s) 897, 1192
HpaII CCGG 1 cut(s) 1196
HphI GGTGA 2 cut(s) 98, 455
Hpy166II GTNNAC 4 cut(s) 243, 289, 291, 1033
Hpy188I TCNGA 4 cut(s) 142, 199, 652, 927
Hpy188III TCNNGA 2 cut(s) 321, 423
Hpy8I GTNNAC 4 cut(s) 243, 289, 291, 1033
HpyAV CCTTC 2 cut(s) 932, 999
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4V TGCA 9 cut(s) 210, 383, 406, 638, 647, 827, 1013, 1025, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 644, 653
HpyF3I CTNAG 4 cut(s) 651, 914, 944, 1100
Hsp92I GRCGYC 1 cut(s) 867
Hsp92II CATG 5 cut(s) 175, 263, 383, 488, 692
KpnI GGTACC 1 cut(s) 991
Kzo9I GATC 3 cut(s) 157, 256, 1047
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 1058
Lsp1109I GCAGC 3 cut(s) 839, 1037, 1048
LweI GCATC 2 cut(s) 656, 949
MaeI CTAG 4 cut(s) 165, 492, 660, 1043
MaeIII GTNAC 1 cut(s) 569
MalI GATC 3 cut(s) 159, 258, 1049
MboI GATC 3 cut(s) 157, 256, 1047
MboII GAAGA 7 cut(s) 38, 266, 411, 691, 694, 1009, 1090
MfeI CAATTG 2 cut(s) 738, 891
MhlI GDGCHC 1 cut(s) 46
MlsI TGGCCA 1 cut(s) 701
MluNI TGGCCA 1 cut(s) 701
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 7 cut(s) 231, 555, 646, 1109, 1143, 1146, 1185
Mox20I TGGCCA 1 cut(s) 701
MscI TGGCCA 1 cut(s) 701
MseI TTAA 4 cut(s) 153, 366, 390, 593
Msp20I TGGCCA 1 cut(s) 701
MspA1I CMGCKG 1 cut(s) 1028
MspI CCGG 1 cut(s) 1196
MspR9I CCNGG 1 cut(s) 104
MunI CAATTG 2 cut(s) 738, 891
Mva1269I GAATGC 2 cut(s) 506, 935
MvaI CCWGG 1 cut(s) 104
MvnI CGCG 1 cut(s) 424
MwoI GCNNNNNNNGC 2 cut(s) 644, 653
NcoI CCATGG 1 cut(s) 688
NdeI CATATG 1 cut(s) 184
NdeII GATC 3 cut(s) 157, 256, 1047
NlaIII CATG 5 cut(s) 175, 263, 383, 488, 692
NlaIV GGNNCC 4 cut(s) 657, 768, 989, 1200
NmeAIII GCCGAG 1 cut(s) 517
NruI TCGCGA 1 cut(s) 424
PceI AGGCCT 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 51
PctI GAATGC 2 cut(s) 506, 935
PfeI GAWTC 2 cut(s) 897, 1192
PflMI CCANNNNNTGG 3 cut(s) 185, 300, 458
PkrI GCNGC 3 cut(s) 829, 1027, 1063
PpuMI RGGWCCY 1 cut(s) 766
Psp5II RGGWCCY 1 cut(s) 766
Psp6I CCWGG 1 cut(s) 102
PspEI GGTNACC 1 cut(s) 569
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 4 cut(s) 657, 768, 989, 1200
PspPI GGNCC 2 cut(s) 488, 766
PspPPI RGGWCCY 1 cut(s) 766
PstI CTGCAG 3 cut(s) 212, 640, 1066
PstNI CAGNNNCTG 1 cut(s) 644
PvuII CAGCTG 1 cut(s) 1028
RruI TCGCGA 1 cut(s) 424
RsaI GTAC 5 cut(s) 290, 779, 837, 977, 989
RsaNI GTAC 5 cut(s) 289, 778, 836, 976, 988
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 4 cut(s) 153, 366, 390, 593
SatI GCNGC 3 cut(s) 828, 1026, 1062
Sau3AI GATC 3 cut(s) 157, 256, 1047
Sau96I GGNCC 2 cut(s) 488, 766
ScaI AGTACT 1 cut(s) 977
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 46
SfaNI GCATC 2 cut(s) 656, 949
SfcI CTRYAG 3 cut(s) 208, 636, 1062
SinI GGWCC 1 cut(s) 766
SseBI AGGCCT 1 cut(s) 214
SsiI CCGC 1 cut(s) 567
SspI AATATT 2 cut(s) 276, 696
SspMI CTAG 4 cut(s) 165, 492, 660, 1043
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 3 cut(s) 66, 491, 688
TaaI ACNGT 1 cut(s) 475
TaqI TCGA 1 cut(s) 627
TatI WGTACW 2 cut(s) 288, 975
TfiI GAWTC 2 cut(s) 897, 1192
Tru1I TTAA 4 cut(s) 153, 366, 390, 593
Tru9I TTAA 4 cut(s) 153, 366, 390, 593
TscAI CASTG 3 cut(s) 301, 837, 1001
TseI GCWGC 3 cut(s) 827, 1025, 1061
TspDTI ATGAA 6 cut(s) 160, 183, 281, 473, 692, 1205
TspRI CASTG 3 cut(s) 301, 837, 1001
Van91I CCANNNNNTGG 3 cut(s) 185, 300, 458
VpaK11BI GGWCC 1 cut(s) 766
XapI RAATTY 2 cut(s) 7, 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 998
XmaJI CCTAGG 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 242
XspI CTAG 4 cut(s) 165, 492, 660, 1043
ZrmI AGTACT 1 cut(s) 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.