AT3G61770

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013308
Physical Location & Seq
Forward (+)
22864543 .. 22866567
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61770.1

Sequence Viewer

Length: 855 bp
ATGGAGTCTCTTACATCAAATCCTTCCTTCGCTTGTTTCTCTAAAACCATTTCTCATTACCCTTCTCGTTTCTCCTTCGTAAAGCTAACCTCTATCCAAAAGTTGGAAGCTTCCAACAACACCTTATCGTTATTCTGCTGTAAATCATCTTCGAATCCTAAACCAGATTGCAATCGTCGTATCAAGTTAAACCCTTTATGTGTATTGCGTCCAATCATTCGAACAATAAAGGGTTTGGTTTCTTCTCAATCCAGGCAATGGATGTCTCGTTTTCGAGCTTACAGAGACGACACGGCGGCGTTTTCTGAGGATTTCGCTGGAGATTTGAAGCATAACGGTGGATTAGGGATTGCCCTTTTGAGCGTTACTGCTTCTGCTAAGATAAAGATTAGCCCTTTCGTTGCGACGCTCTCTGCGAATCCAACTTTCGTTTCAGCTGTAGTCGCGTGGTTCTTTGCGCAATCGAGTAAAATGGTTATCAATTTCTTCATTGAGAGGAAATGGGATTTTCGTCTTCTCTATGCTTCTGGTGGGATGCCTTCGTCTCACTCAGCTTTATGTATGGCTTTGACGACCTCTGTGGCGCTTTGTCATGGAGTTGCAGATTCCTTGTTTCCTGTTTGTTTAGGGTTTAGCTTGATTGTCATGTATGATGCAATTGGTGTTAGACGCCATGCCGGTATGCAAGCTGAGGTTCTGAACTTGATCATTAGGGACTTGTTCGAAGGACATCCCATCAGTCAAAGAAAGCTTAAGGAACTGCTTGGTCACACTCCTTCGCAGGTTCTTGCTGGAGCATTGGTTGGTATTGTGATTGCTTGCTTTTGTTGCCAAGGCTATCTCGTCTCAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

284

Amino Acids

31.09

Weight (kDa)

9.42

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 139 - 272 3.2e-49 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61770
fragaria_vesca FvH4_7g16450 FvH4_7g16450
malus_domestica MD01G1080900.v1.1
prunus_persica Prupe.2G188600_v2.0.a1 Prupe.2G188600_v2.0.a1
pyrus_communis pycom01g10890
rosa_chinensis RchiOBHm_Chr1g0359491
rosa_laevigata RLG00000027865
rosa_multiflora Rmu_sc0002556.1_g000008
rosa_roxburghii Rroxscaffold_4G00296960
rosa_rugosa Rorug01G0271600 Rorug01G0271700
rosa_samantha Rh1AG285100 Rh1BG251200 Rh1CG269000 Rh1DG280300
rosa_wichuraiana Rw1G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 772
AccB7I CCANNNNNTGG 2 cut(s) 103, 258
AccII CGCG 1 cut(s) 446
AciI CCGC 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 670
AfiI CCNNNNNNNGG 2 cut(s) 103, 258
AflII CTTAAG 1 cut(s) 752
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 1 cut(s) 251
AjuI GAANNNNNNNTTGG 2 cut(s) 415, 447
AluBI AGCT 8 cut(s) 85, 110, 278, 437, 554, 636, 689, 751
AluI AGCT 8 cut(s) 85, 110, 278, 437, 554, 636, 689, 751
Alw26I GTCTC 5 cut(s) 12, 270, 279, 549, 850
AspLEI GCGC 2 cut(s) 460, 586
AsuII TTCGAA 3 cut(s) 152, 220, 723
BarI GAAGNNNNNNTAC 2 cut(s) 133, 165
BbsI GAAGAC 1 cut(s) 506
BbvCI CCTCAGC 1 cut(s) 690
BccI CCATC 1 cut(s) 743
BceAI ACGGC 1 cut(s) 309
BciT130I CCWGG 1 cut(s) 253
BclI TGATCA 1 cut(s) 705
BcoDI GTCTC 5 cut(s) 12, 270, 279, 549, 850
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 587
BfrI CTTAAG 1 cut(s) 752
BfuAI ACCTGC 1 cut(s) 772
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 2 cut(s) 525, 643
BpiI GAAGAC 1 cut(s) 506
BpmI CTGGAG 2 cut(s) 339, 813
Bpu10I CCTNAGC 1 cut(s) 690
Bpu14I TTCGAA 3 cut(s) 152, 220, 723
BsaBI GATNNNNATC 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 670
BsaJI CCNNGG 1 cut(s) 832
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 258
Bse118I RCCGGY 1 cut(s) 677
Bse3DI GCAATG 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 832
BseGI GGATG 3 cut(s) 267, 540, 730
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 103, 258
BseMI GCAATG 1 cut(s) 263
BseMII CTCAG 3 cut(s) 297, 564, 681
Bsh1236I CGCG 1 cut(s) 446
BsiSI CCGG 1 cut(s) 678
BslFI GGGAC 1 cut(s) 728
BslI CCNNNNNNNGG 2 cut(s) 103, 258
BsmAI GTCTC 5 cut(s) 12, 270, 279, 549, 850
BsmBI CGTCTC 3 cut(s) 279, 549, 850
BsmFI GGGAC 1 cut(s) 728
Bsp119I TTCGAA 3 cut(s) 152, 220, 723
Bsp143I GATC 1 cut(s) 705
BspACI CCGC 1 cut(s) 296
BspCNI CTCAG 3 cut(s) 298, 563, 682
BspFNI CGCG 1 cut(s) 446
BspMI ACCTGC 1 cut(s) 772
BspT104I TTCGAA 3 cut(s) 152, 220, 723
BspTI CTTAAG 1 cut(s) 752
BsrDI GCAATG 1 cut(s) 263
BsrFI RCCGGY 1 cut(s) 677
BssAI RCCGGY 1 cut(s) 677
BssECI CCNNGG 1 cut(s) 832
BssMI GATC 1 cut(s) 705
BssNI GRCGYC 1 cut(s) 670
BssT1I CCWWGG 1 cut(s) 832
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 338
BstACI GRCGYC 1 cut(s) 670
BstAFI CTTAAG 1 cut(s) 752
BstBI TTCGAA 3 cut(s) 152, 220, 723
BstC8I GCNNGC 2 cut(s) 687, 820
BstDEI CTNAG 5 cut(s) 306, 378, 550, 690, 847
BstF5I GGATG 3 cut(s) 267, 540, 730
BstFNI CGCG 1 cut(s) 446
BstH2I RGCGCY 1 cut(s) 587
BstHHI GCGC 2 cut(s) 460, 586
BstKTI GATC 1 cut(s) 708
BstMAI GTCTC 5 cut(s) 12, 270, 279, 549, 850
BstMBI GATC 1 cut(s) 705
BstMWI GCNNNNNNNGC 2 cut(s) 443, 828
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 446
BstV2I GAAGAC 1 cut(s) 506
BtsCI GGATG 3 cut(s) 267, 540, 730
BveI ACCTGC 1 cut(s) 772
Cac8I GCNNGC 2 cut(s) 687, 820
CfoI GCGC 2 cut(s) 460, 586
Cfr10I RCCGGY 1 cut(s) 677
CseI GACGC 3 cut(s) 197, 415, 678
CviAII CATG 3 cut(s) 593, 646, 674
DdeI CTNAG 5 cut(s) 306, 378, 550, 690, 847
DpnI GATC 1 cut(s) 707
DpnII GATC 1 cut(s) 705
Eco130I CCWWGG 1 cut(s) 832
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 832
ErhI CCWWGG 1 cut(s) 832
Esp3I CGTCTC 3 cut(s) 279, 549, 850
FaeI CATG 3 cut(s) 596, 649, 677
FaqI GGGAC 1 cut(s) 728
FatI CATG 3 cut(s) 592, 645, 673
FbaI TGATCA 1 cut(s) 705
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 3 cut(s) 274, 547, 717
Fsp4HI GCNGC 1 cut(s) 297
FspI TGCGCA 1 cut(s) 459
GlaI GCGC 2 cut(s) 459, 585
GluI GCNGC 1 cut(s) 297
GsuI CTGGAG 2 cut(s) 339, 813
HaeII RGCGCY 1 cut(s) 587
HapII CCGG 1 cut(s) 678
HgaI GACGC 3 cut(s) 197, 415, 678
HhaI GCGC 2 cut(s) 460, 586
Hin1I GRCGYC 1 cut(s) 670
Hin1II CATG 3 cut(s) 596, 649, 677
Hin6I GCGC 2 cut(s) 458, 584
HinP1I GCGC 2 cut(s) 458, 584
HindIII AAGCTT 2 cut(s) 108, 749
HinfI GANTC 4 cut(s) 5, 154, 418, 605
HpaII CCGG 1 cut(s) 678
Hpy188I TCNGA 2 cut(s) 307, 699
Hpy99I CGWCG 2 cut(s) 180, 409
HpyAV CCTTC 7 cut(s) 33, 37, 72, 85, 549, 719, 786
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4V TGCA 4 cut(s) 171, 602, 656, 685
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 828
HpyF3I CTNAG 5 cut(s) 306, 378, 550, 690, 847
Hsp92I GRCGYC 1 cut(s) 670
Hsp92II CATG 3 cut(s) 596, 649, 677
HspAI GCGC 2 cut(s) 458, 584
Ksp22I TGATCA 1 cut(s) 705
Kzo9I GATC 1 cut(s) 705
LmnI GCTCC 1 cut(s) 794
LpnPI CCDG 9 cut(s) 177, 238, 265, 303, 513, 630, 691, 767, 777
LweI GCATC 2 cut(s) 525, 643
MaeIII GTNAC 2 cut(s) 364, 767
MalI GATC 1 cut(s) 707
MboI GATC 1 cut(s) 705
MboII GAAGA 4 cut(s) 141, 234, 478, 506
MfeI CAATTG 1 cut(s) 657
MluCI AATT 2 cut(s) 481, 657
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 3 cut(s) 84, 138, 446
MnlI CCTC 5 cut(s) 100, 301, 489, 586, 685
MseI TTAA 2 cut(s) 188, 753
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 437
MspCI CTTAAG 1 cut(s) 752
MspI CCGG 1 cut(s) 678
MspR9I CCNGG 1 cut(s) 253
MunI CAATTG 1 cut(s) 657
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 2 cut(s) 443, 828
NdeII GATC 1 cut(s) 705
NlaIII CATG 3 cut(s) 596, 649, 677
NmuCI GTSAC 1 cut(s) 767
NsbI TGCGCA 1 cut(s) 459
NspV TTCGAA 3 cut(s) 152, 220, 723
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PfeI GAWTC 3 cut(s) 154, 418, 605
PflMI CCANNNNNTGG 2 cut(s) 103, 258
PkrI GCNGC 1 cut(s) 298
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PvuII CAGCTG 1 cut(s) 437
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 2 cut(s) 188, 753
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 1 cut(s) 705
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 253
SfaNI GCATC 2 cut(s) 525, 643
SfcI CTRYAG 1 cut(s) 438
SfuI TTCGAA 3 cut(s) 152, 220, 723
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 2 cut(s) 481, 657
SsiI CCGC 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 832
TaaI ACNGT 1 cut(s) 338
TaqI TCGA 5 cut(s) 152, 220, 274, 464, 723
TasI AATT 2 cut(s) 481, 657
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 3 cut(s) 154, 418, 605
Tru1I TTAA 2 cut(s) 188, 753
Tru9I TTAA 2 cut(s) 188, 753
TseFI GTSAC 1 cut(s) 767
Tsp45I GTSAC 1 cut(s) 767
TspDTI ATGAA 1 cut(s) 478
Van91I CCANNNNNTGG 2 cut(s) 103, 258
Vha464I CTTAAG 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.