Rroxscaffold_4G00296960

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013308
Physical Location & Seq
Reverse (-)
16958164 .. 16961665
3502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00296960.1

Sequence Viewer

Length: 930 bp
ATGGACTCCATCACAACAAACCACCCATTCAGCTCCTTCATTCTCAGCCCCTTAAACCCTCACACCAAACCCTCCTTCACAGCAAATTTCTCCCATTTCAAGAAGCTTAGGAAGTCTTTGGTTTGTTTCTCTCATAGGCCTAGTTCTAATTCAAATCCCAGAAACTCAAGATGGCCAAAGCCCTTGTCTTTTCGCAAGTTTTCCTTAAACTCTATCTGGGTTTTGGTCCCGGTCCTCCAGAGCATCAGGGTTTTAGCTTCTTCAAGGACCCAAAAGTGGGCTTCTTTTGTACAGGCTTATACGGACTCAGGGAGGCTTGTACATGAAAAAAGCAACGATTTTTTGCAGAACAGTGGGATTGGGTTAGCTCTGTTGAGTGTGACCACAAATGCCAAGGTGAAGATTAGTCCTTTCGTGGCTCAACTGGCTGCGAATCCGACCTTTGTTTCGGGGATGTTTGCTTGGTTTATGGCACAGTCGATCAAAGTGGTGTTGAATTTCTTTGTGGAGAGGAAGTGGGATTTGAGGATATTGTATGCTTCTGGAGGCATGCCTTCGTCTCATTCGGCTTTGTGCACTGCTTTGACGACCTCTGTGGCGCTTTGTCATGGTGTTGCGGACTCATTGTTTCCAGTTTGTTTGGGTTTTAGCCTCATTGTTATGTATGATGCTACTGGGGTTAGGAGACATGCTGGTATGCAAGCTGAGGCGTCTTGTAACTTCTGCAACTCTGTATTCTTTACAGTCTCCTGCTCATATTGTAGTTCTAGTGCTGAATGTAGTCGTAGAGTACTTATTCCAAGGGCATCCAATCAGCCAAAAGAAGCTCAAGGAACTCCTTGGTCACACCCCTCCCAGGTTCTTGCTGGAGCTGTCCTCGGCATTGTGGTCGCATGTGTTTGTTGCCAGGGAAGCTTGGTTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

309

Amino Acids

33.67

Weight (kDa)

9.72

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 144 - 297 4.3e-38 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61770
fragaria_vesca FvH4_7g16450 FvH4_7g16450
malus_domestica MD01G1080900.v1.1
prunus_persica Prupe.2G188600_v2.0.a1 Prupe.2G188600_v2.0.a1
pyrus_communis pycom01g10890
rosa_chinensis RchiOBHm_Chr1g0359491
rosa_laevigata RLG00000027865
rosa_multiflora Rmu_sc0002556.1_g000008
rosa_roxburghii Rroxscaffold_4G00296960
rosa_rugosa Rorug01G0271600 Rorug01G0271700
rosa_samantha Rh1AG285100 Rh1BG251200 Rh1CG269000 Rh1DG280300
rosa_wichuraiana Rw1G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 617
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 2 cut(s) 85, 496
AcyI GRCGYC 1 cut(s) 710
AfaI GTAC 3 cut(s) 291, 321, 792
AfiI CCNNNNNNNGG 3 cut(s) 276, 277, 856
AgsI TTSAA 4 cut(s) 100, 153, 264, 496
AjnI CCWGG 2 cut(s) 855, 906
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 8 cut(s) 33, 106, 257, 368, 704, 827, 872, 915
AluI AGCT 8 cut(s) 33, 106, 257, 368, 704, 827, 872, 915
Alw21I GWGCWC 1 cut(s) 578
Alw26I GTCTC 3 cut(s) 564, 679, 751
Alw44I GTGCAC 1 cut(s) 574
AoxI GGCC 2 cut(s) 137, 173
ApaLI GTGCAC 1 cut(s) 574
ApeKI GCWGC 2 cut(s) 428, 923
ApoI RAATTY 2 cut(s) 85, 496
ArsI GACNNNNNNTTYG 4 cut(s) 170, 202, 430, 462
AspLEI GCGC 1 cut(s) 601
AspS9I GGNCC 3 cut(s) 226, 232, 267
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 409
AvaII GGWCC 3 cut(s) 226, 232, 267
BaeGI GKGCMC 1 cut(s) 578
BalI TGGCCA 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 578
BbvCI CCTCAGC 1 cut(s) 705
BbvI GCAGC 2 cut(s) 415, 910
BccI CCATC 2 cut(s) 17, 165
BcgI CGANNNNNNTGC 2 cut(s) 871, 905
BciT130I CCWGG 2 cut(s) 857, 908
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 3 cut(s) 564, 679, 751
BfaI CTAG 2 cut(s) 141, 768
BfoI RGCGCY 1 cut(s) 602
BisI GCNGC 2 cut(s) 429, 924
BlsI GCNGC 2 cut(s) 430, 925
BmcAI AGTACT 1 cut(s) 792
Bme1390I CCNGG 3 cut(s) 230, 857, 908
Bme18I GGWCC 3 cut(s) 226, 232, 267
BmgT120I GGNCC 3 cut(s) 226, 232, 267
BmiI GGNNCC 2 cut(s) 228, 269
BmrFI CCNGG 3 cut(s) 230, 857, 908
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 3 cut(s) 252, 658, 815
BmuI ACTGGG 1 cut(s) 684
BplI GAGNNNNNCTC 2 cut(s) 861, 893
BpmI CTGGAG 3 cut(s) 221, 564, 888
Bpu10I CCTNAGC 2 cut(s) 107, 705
BpuEI CTTGAG 2 cut(s) 151, 813
BpuMI CCSGG 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 710
BsaJI CCNNGG 6 cut(s) 393, 800, 839, 855, 877, 907
BsaXI ACNNNNNCTCC 2 cut(s) 500, 530
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 277, 856
Bse1I ACTGG 3 cut(s) 429, 632, 679
BseBI CCWGG 2 cut(s) 857, 908
BseDI CCNNGG 6 cut(s) 393, 800, 839, 855, 877, 907
BseGI GGATG 2 cut(s) 459, 806
BseLI CCNNNNNNNGG 3 cut(s) 276, 277, 856
BseMII CTCAG 3 cut(s) 58, 321, 696
BseNI ACTGG 3 cut(s) 429, 632, 679
BseSI GKGCMC 1 cut(s) 578
BseXI GCAGC 2 cut(s) 415, 910
BshFI GGCC 2 cut(s) 139, 175
BsiHKAI GWGCWC 1 cut(s) 578
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 3 cut(s) 276, 277, 856
BsmAI GTCTC 3 cut(s) 564, 679, 751
BsmBI CGTCTC 1 cut(s) 564
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 2 cut(s) 139, 175
Bsp1286I GDGCHC 1 cut(s) 578
Bsp1407I TGTACA 2 cut(s) 289, 319
Bsp143I GATC 1 cut(s) 480
BspACI CCGC 1 cut(s) 617
BspANI GGCC 2 cut(s) 139, 175
BspCNI CTCAG 3 cut(s) 57, 320, 697
BspLI GGNNCC 2 cut(s) 228, 269
BsrGI TGTACA 2 cut(s) 289, 319
BsrI ACTGG 3 cut(s) 429, 632, 679
BssECI CCNNGG 6 cut(s) 393, 800, 839, 855, 877, 907
BssMI GATC 1 cut(s) 480
BssNI GRCGYC 1 cut(s) 710
BssT1I CCWWGG 3 cut(s) 393, 800, 839
Bst2UI CCWGG 2 cut(s) 857, 908
Bst4CI ACNGT 3 cut(s) 353, 477, 745
BstACI GRCGYC 1 cut(s) 710
BstAUI TGTACA 2 cut(s) 289, 319
BstC8I GCNNGC 2 cut(s) 551, 702
BstDEI CTNAG 4 cut(s) 44, 107, 307, 705
BstF5I GGATG 2 cut(s) 459, 806
BstH2I RGCGCY 1 cut(s) 602
BstHHI GCGC 1 cut(s) 601
BstKTI GATC 1 cut(s) 483
BstMAI GTCTC 3 cut(s) 564, 679, 751
BstMBI GATC 1 cut(s) 480
BstMWI GCNNNNNNNGC 2 cut(s) 425, 912
BstNI CCWGG 2 cut(s) 857, 908
BstNSI RCATGY 3 cut(s) 553, 692, 897
BstSCI CCNGG 3 cut(s) 228, 855, 906
BstSLI GKGCMC 1 cut(s) 578
BstV1I GCAGC 2 cut(s) 415, 910
BsuRI GGCC 2 cut(s) 139, 175
BtsCI GGATG 2 cut(s) 459, 806
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 2 cut(s) 358, 576
Cac8I GCNNGC 2 cut(s) 551, 702
CfoI GCGC 1 cut(s) 601
Cfr13I GGNCC 3 cut(s) 226, 232, 267
CseI GACGC 1 cut(s) 699
Csp6I GTAC 3 cut(s) 290, 320, 791
CviAII CATG 5 cut(s) 323, 550, 608, 689, 894
CviQI GTAC 3 cut(s) 290, 320, 791
DdeI CTNAG 4 cut(s) 44, 107, 307, 705
DpnI GATC 1 cut(s) 482
DpnII GATC 1 cut(s) 480
EaeI YGGCCR 1 cut(s) 173
Eco130I CCWWGG 3 cut(s) 393, 800, 839
Eco147I AGGCCT 1 cut(s) 139
Eco47I GGWCC 3 cut(s) 226, 232, 267
EcoO109I RGGNCCY 1 cut(s) 267
EcoRII CCWGG 2 cut(s) 855, 906
EcoT14I CCWWGG 3 cut(s) 393, 800, 839
ErhI CCWWGG 3 cut(s) 393, 800, 839
Esp3I CGTCTC 1 cut(s) 564
FaeI CATG 5 cut(s) 326, 553, 611, 692, 897
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 1 cut(s) 212
FatI CATG 5 cut(s) 322, 549, 607, 688, 893
Fnu4HI GCNGC 2 cut(s) 429, 924
FokI GGATG 2 cut(s) 466, 793
Fsp4HI GCNGC 2 cut(s) 429, 924
FspBI CTAG 2 cut(s) 141, 768
GlaI GCGC 1 cut(s) 600
GluI GCNGC 2 cut(s) 429, 924
GsuI CTGGAG 3 cut(s) 221, 564, 888
HaeII RGCGCY 1 cut(s) 602
HaeIII GGCC 2 cut(s) 139, 175
HapII CCGG 1 cut(s) 230
HgaI GACGC 1 cut(s) 699
HhaI GCGC 1 cut(s) 601
Hin1I GRCGYC 1 cut(s) 710
Hin1II CATG 5 cut(s) 326, 553, 611, 692, 897
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HindIII AAGCTT 2 cut(s) 104, 913
HinfI GANTC 4 cut(s) 5, 305, 433, 620
HpaII CCGG 1 cut(s) 230
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 1 cut(s) 438
Hpy188III TCNNGA 4 cut(s) 100, 168, 238, 543
Hpy8I GTNNAC 1 cut(s) 576
HpyAV CCTTC 3 cut(s) 46, 85, 564
HpyCH4III ACNGT 3 cut(s) 353, 477, 745
HpyCH4V TGCA 4 cut(s) 346, 576, 700, 726
HpyF10VI GCNNNNNNNGC 2 cut(s) 425, 912
HpyF3I CTNAG 4 cut(s) 44, 107, 307, 705
Hsp92I GRCGYC 1 cut(s) 710
Hsp92II CATG 5 cut(s) 326, 553, 611, 692, 897
HspAI GCGC 1 cut(s) 599
Kzo9I GATC 1 cut(s) 480
LmnI GCTCC 2 cut(s) 38, 869
Lsp1109I GCAGC 2 cut(s) 415, 910
LweI GCATC 3 cut(s) 252, 658, 815
MaeI CTAG 2 cut(s) 141, 768
MaeIII GTNAC 3 cut(s) 379, 716, 843
MalI GATC 1 cut(s) 482
MboI GATC 1 cut(s) 480
MboII GAAGA 2 cut(s) 252, 412
MhlI GDGCHC 1 cut(s) 578
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 3 cut(s) 85, 148, 496
MluNI TGGCCA 1 cut(s) 175
MlyI GAGTC 2 cut(s) 299, 614
MmeI TCCRAC 1 cut(s) 461
Mox20I TGGCCA 1 cut(s) 175
MscI TGGCCA 1 cut(s) 175
MseI TTAA 2 cut(s) 53, 206
MslI CAYNNNNRTG 1 cut(s) 659
Msp20I TGGCCA 1 cut(s) 175
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 3 cut(s) 230, 857, 908
MvaI CCWGG 2 cut(s) 857, 908
MwoI GCNNNNNNNGC 2 cut(s) 425, 912
NciI CCSGG 1 cut(s) 230
NdeII GATC 1 cut(s) 480
NlaIII CATG 5 cut(s) 326, 553, 611, 692, 897
NlaIV GGNNCC 2 cut(s) 228, 269
NmeAIII GCCGAG 1 cut(s) 858
NmuCI GTSAC 2 cut(s) 379, 843
NspI RCATGY 3 cut(s) 553, 692, 897
PaeI GCATGC 1 cut(s) 553
PceI AGGCCT 1 cut(s) 139
PfeI GAWTC 1 cut(s) 433
PkrI GCNGC 2 cut(s) 430, 925
PleI GAGTC 2 cut(s) 299, 614
PpsI GAGTC 2 cut(s) 299, 614
PpuMI RGGWCCY 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 855, 906
PspGI CCWGG 2 cut(s) 855, 906
PspN4I GGNNCC 2 cut(s) 228, 269
PspPI GGNCC 3 cut(s) 226, 232, 267
PspPPI RGGWCCY 1 cut(s) 267
RsaI GTAC 3 cut(s) 291, 321, 792
RsaNI GTAC 3 cut(s) 290, 320, 791
RseI CAYNNNNRTG 1 cut(s) 659
SaqAI TTAA 2 cut(s) 53, 206
SatI GCNGC 2 cut(s) 429, 924
Sau3AI GATC 1 cut(s) 480
Sau96I GGNCC 3 cut(s) 226, 232, 267
ScaI AGTACT 1 cut(s) 792
SchI GAGTC 2 cut(s) 299, 614
ScrFI CCNGG 3 cut(s) 230, 857, 908
SduI GDGCHC 1 cut(s) 578
SfaNI GCATC 3 cut(s) 252, 658, 815
SinI GGWCC 3 cut(s) 226, 232, 267
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 2 cut(s) 166, 828
SmoI CTYRAG 2 cut(s) 166, 828
SphI GCATGC 1 cut(s) 553
Sse9I AATT 3 cut(s) 85, 148, 496
SseBI AGGCCT 1 cut(s) 139
SsiI CCGC 1 cut(s) 617
SspMI CTAG 2 cut(s) 141, 768
StuI AGGCCT 1 cut(s) 139
StyD4I CCNGG 3 cut(s) 228, 855, 906
StyI CCWWGG 3 cut(s) 393, 800, 839
TaaI ACNGT 3 cut(s) 353, 477, 745
TaqI TCGA 1 cut(s) 479
TasI AATT 3 cut(s) 85, 148, 496
TatI WGTACW 3 cut(s) 289, 319, 790
TfiI GAWTC 1 cut(s) 433
Tru1I TTAA 2 cut(s) 53, 206
Tru9I TTAA 2 cut(s) 53, 206
TscAI CASTG 2 cut(s) 358, 583
TseFI GTSAC 2 cut(s) 379, 843
TseI GCWGC 2 cut(s) 428, 923
Tsp45I GTSAC 2 cut(s) 379, 843
TspDTI ATGAA 2 cut(s) 28, 339
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 2 cut(s) 358, 583
VneI GTGCAC 1 cut(s) 574
VpaK11BI GGWCC 3 cut(s) 226, 232, 267
XapI RAATTY 2 cut(s) 85, 496
XceI RCATGY 3 cut(s) 553, 692, 897
XcmI CCANNNNNNNNNTGG 1 cut(s) 863
XspI CTAG 2 cut(s) 141, 768
ZrmI AGTACT 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.