MD01G1080900.v1.1

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0013308
Physical Location & Seq
Forward (+)
18804712 .. 18807252
2541 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1080900.v1.1.491

Sequence Viewer

Length: 915 bp
ATGGACTCAGTTGTAACGAAACACTCACTCACTTCCTTTAATCTCAGCCCCTTTCAATCCACCACCGCCGCAGCAACCTCCTCCTTCTCCTTCTTCAGATTCTCTCACTCCAGAAAACTCAGAACTTCAACGTCCTCAATCTCCTGCTCCCACAGACCGCCTTCCAATCCAAAATACCCAAAACCCGGATCGGATTCTCATAATTTCCCCCTAAATCCCCTCTGGGTTTTGGTCCCGGTCCTCCAAAGCATCGGAGTCTTGGCCTCCTCACGAACCCAGAAGTGGGTTTCTTTCCTACAGGCTTACGGAGGGTCAGAGAGTTTCGTGGAAGCAAAAAGCAATGACTTTTTACACAATAGCGGGATTGGGGTGGCGTTGCTGAGCGTGACGACCAATGCCAAGGTGAAAATTAGTCCTTTCGTGGCGCAATTGGCTGCGAATCCGACCTTTGTTTCGGGGCTTTTCGCATGGTTTATGGCGCAGTCAATGAAGGTTTTGCTGAACTTCTTTGTGGAGAGGAAGTGGGATTTCAGAATATTGTATTCCTCCGGAGGTATGCCGTCGTCGCACTCGGCGTTGTGCACGGCATTGACGACGTCTGTGGCGCTCTGTCACGGGGTTGCGGACTCGCTTTTTCCGGTTAGTTTGGGGTTCAGTCTCATTGTTATGTATGATGCTATTGGTGTTCGACGGCATGCTGGTATGCAAGCAGAGGAAGGAGTTATGGAACTTCTAGTGGTCCCAATGGATGAGGTCCTTAACATAGTCGTTGAGTACTTGTTCAAGGGGCATCCCATCAGCCAGAAAAAGCTCAAGGAACTCCTTGGCCACACTCCCTCCCAGGTTATTGGTGGAGCTCTCCTCGGCATTTTGGTTGCTTGCGTTTGTTGTCAGGGCAGCTTGGTTGCCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

305

Amino Acids

32.81

Weight (kDa)

9.17

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 146 - 292 3.5e-45 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61770
fragaria_vesca FvH4_7g16450 FvH4_7g16450
malus_domestica MD01G1080900.v1.1
prunus_persica Prupe.2G188600_v2.0.a1 Prupe.2G188600_v2.0.a1
pyrus_communis pycom01g10890
rosa_chinensis RchiOBHm_Chr1g0359491
rosa_laevigata RLG00000027865
rosa_multiflora Rmu_sc0002556.1_g000008
rosa_roxburghii Rroxscaffold_4G00296960
rosa_rugosa Rorug01G0271600 Rorug01G0271700
rosa_samantha Rh1AG285100 Rh1BG251200 Rh1CG269000 Rh1DG280300
rosa_wichuraiana Rw1G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 599
AccIII TCCGGA 1 cut(s) 548
AciI CCGC 5 cut(s) 66, 69, 158, 360, 623
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 826
AcuI CTGAAG 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 1 cut(s) 776
AfiI CCNNNNNNNGG 3 cut(s) 185, 282, 283
AgsI TTSAA 3 cut(s) 56, 129, 784
AjnI CCWGG 1 cut(s) 840
AluBI AGCT 3 cut(s) 811, 857, 900
AluI AGCT 3 cut(s) 811, 857, 900
Alw21I GWGCWC 2 cut(s) 584, 859
Alw26I GTCTC 1 cut(s) 662
Alw44I GTGCAC 1 cut(s) 580
AlwI GGATC 1 cut(s) 196
Aor13HI TCCGGA 1 cut(s) 548
AoxI GGCC 2 cut(s) 261, 826
ApaLI GTGCAC 1 cut(s) 580
ApeKI GCWGC 3 cut(s) 71, 434, 897
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
AspLEI GCGC 3 cut(s) 427, 481, 607
AspS9I GGNCC 4 cut(s) 232, 238, 739, 754
AsuC2I CCSGG 2 cut(s) 186, 236
AsuHPI GGTGA 1 cut(s) 415
AvaII GGWCC 4 cut(s) 232, 238, 739, 754
BaeGI GKGCMC 1 cut(s) 584
BalI TGGCCA 1 cut(s) 828
BanII GRGCYC 1 cut(s) 859
Bbv12I GWGCWC 2 cut(s) 584, 859
BbvI GCAGC 3 cut(s) 83, 421, 909
BccI CCATC 1 cut(s) 803
BceAI ACGGC 3 cut(s) 544, 600, 707
BciT130I CCWGG 1 cut(s) 842
BcnI CCSGG 2 cut(s) 186, 236
BcoDI GTCTC 1 cut(s) 662
BfaI CTAG 1 cut(s) 734
BfmI CTRYAG 1 cut(s) 296
BfoI RGCGCY 1 cut(s) 608
BisI GCNGC 4 cut(s) 69, 72, 435, 898
BlpI GCTNAGC 1 cut(s) 380
BlsI GCNGC 4 cut(s) 70, 73, 436, 899
BmcAI AGTACT 1 cut(s) 776
Bme1390I CCNGG 3 cut(s) 186, 236, 842
Bme18I GGWCC 4 cut(s) 232, 238, 739, 754
BmgT120I GGNCC 4 cut(s) 232, 238, 739, 754
BmiI GGNNCC 2 cut(s) 234, 741
BmrFI CCNGG 3 cut(s) 186, 236, 842
BmsI GCATC 3 cut(s) 258, 664, 799
BplI GAGNNNNNCTC 2 cut(s) 846, 878
BpmI CTGGAG 1 cut(s) 94
Bpu1102I GCTNAGC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 797
BpuMI CCSGG 2 cut(s) 186, 236
BsaHI GRCGYC 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 399, 823, 840, 862
BsaWI WCCGGW 2 cut(s) 548, 637
BsaXI ACNNNNNCTCC 4 cut(s) 506, 536, 821, 851
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 282, 283
Bse3DI GCAATG 1 cut(s) 346
BseAI TCCGGA 1 cut(s) 548
BseBI CCWGG 1 cut(s) 842
BseDI CCNNGG 4 cut(s) 399, 823, 840, 862
BseGI GGATG 2 cut(s) 754, 790
BseLI CCNNNNNNNGG 3 cut(s) 185, 282, 283
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 4 cut(s) 21, 58, 133, 371
BseRI GAGGAG 3 cut(s) 70, 256, 851
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 3 cut(s) 83, 421, 909
BshFI GGCC 2 cut(s) 263, 828
BsiHKAI GWGCWC 2 cut(s) 584, 859
BsiSI CCGG 4 cut(s) 186, 236, 549, 638
BslFI GGGAC 2 cut(s) 218, 725
BslI CCNNNNNNNGG 3 cut(s) 185, 282, 283
BsmAI GTCTC 1 cut(s) 662
BsmFI GGGAC 2 cut(s) 218, 725
BsnI GGCC 2 cut(s) 263, 828
Bsp1286I GDGCHC 2 cut(s) 584, 859
Bsp13I TCCGGA 1 cut(s) 548
Bsp143I GATC 1 cut(s) 188
Bsp1720I GCTNAGC 1 cut(s) 380
BspACI CCGC 5 cut(s) 66, 69, 158, 360, 623
BspANI GGCC 2 cut(s) 263, 828
BspCNI CTCAG 4 cut(s) 20, 57, 132, 372
BspEI TCCGGA 1 cut(s) 548
BspLI GGNNCC 2 cut(s) 234, 741
BspPI GGATC 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 346
BssECI CCNNGG 4 cut(s) 399, 823, 840, 862
BssMI GATC 1 cut(s) 188
BssNI GRCGYC 1 cut(s) 596
BssT1I CCWWGG 2 cut(s) 399, 823
Bst2UI CCWGG 1 cut(s) 842
BstACI GRCGYC 1 cut(s) 596
BstC8I GCNNGC 3 cut(s) 696, 708, 880
BstDEI CTNAG 4 cut(s) 7, 44, 119, 380
BstF5I GGATG 2 cut(s) 754, 790
BstH2I RGCGCY 1 cut(s) 608
BstHHI GCGC 3 cut(s) 427, 481, 607
BstKTI GATC 1 cut(s) 191
BstMAI GTCTC 1 cut(s) 662
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 2 cut(s) 431, 565
BstNI CCWGG 1 cut(s) 842
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 3 cut(s) 184, 234, 840
BstSFI CTRYAG 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 584
BstV1I GCAGC 3 cut(s) 83, 421, 909
BstXI CCANNNNNNTGG 1 cut(s) 848
BsuRI GGCC 2 cut(s) 263, 828
BtsCI GGATG 2 cut(s) 754, 790
Cac8I GCNNGC 3 cut(s) 696, 708, 880
CfoI GCGC 3 cut(s) 427, 481, 607
Cfr13I GGNCC 4 cut(s) 232, 238, 739, 754
Csp6I GTAC 1 cut(s) 775
CviAII CATG 2 cut(s) 468, 695
CviQI GTAC 1 cut(s) 775
DdeI CTNAG 4 cut(s) 7, 44, 119, 380
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 826
Ecl136II GAGCTC 1 cut(s) 857
Eco130I CCWWGG 2 cut(s) 399, 823
Eco24I GRGCYC 1 cut(s) 859
Eco47I GGWCC 4 cut(s) 232, 238, 739, 754
Eco53kI GAGCTC 1 cut(s) 857
Eco57I CTGAAG 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 857
EcoO109I RGGNCCY 1 cut(s) 754
EcoRII CCWGG 1 cut(s) 840
EcoT14I CCWWGG 2 cut(s) 399, 823
EcoT38I GRGCYC 1 cut(s) 859
ErhI CCWWGG 2 cut(s) 399, 823
FaeI CATG 2 cut(s) 471, 698
FaqI GGGAC 2 cut(s) 218, 725
FatI CATG 2 cut(s) 467, 694
FauI CCCGC 1 cut(s) 353
Fnu4HI GCNGC 4 cut(s) 69, 72, 435, 898
FokI GGATG 2 cut(s) 761, 777
FriOI GRGCYC 1 cut(s) 859
Fsp4HI GCNGC 4 cut(s) 69, 72, 435, 898
FspBI CTAG 1 cut(s) 734
GlaI GCGC 3 cut(s) 426, 480, 606
GluI GCNGC 4 cut(s) 69, 72, 435, 898
GsuI CTGGAG 1 cut(s) 94
HaeII RGCGCY 1 cut(s) 608
HaeIII GGCC 2 cut(s) 263, 828
HapII CCGG 4 cut(s) 186, 236, 549, 638
HhaI GCGC 3 cut(s) 427, 481, 607
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 2 cut(s) 471, 698
Hin6I GCGC 3 cut(s) 425, 479, 605
HinP1I GCGC 3 cut(s) 425, 479, 605
HinfI GANTC 6 cut(s) 5, 99, 194, 255, 439, 626
HpaII CCGG 4 cut(s) 186, 236, 549, 638
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 582
Hpy188I TCNGA 7 cut(s) 98, 122, 193, 254, 316, 444, 533
Hpy188III TCNNGA 4 cut(s) 111, 270, 549, 912
Hpy8I GTNNAC 1 cut(s) 582
Hpy99I CGWCG 4 cut(s) 565, 568, 598, 693
HpyAV CCTTC 5 cut(s) 94, 100, 171, 484, 710
HpyCH4IV ACGT 2 cut(s) 131, 596
HpyCH4V TGCA 2 cut(s) 582, 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 565
HpyF3I CTNAG 4 cut(s) 7, 44, 119, 380
HpySE526I ACGT 2 cut(s) 131, 596
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 2 cut(s) 471, 698
HspAI GCGC 3 cut(s) 425, 479, 605
Kpn2I TCCGGA 1 cut(s) 548
Kzo9I GATC 1 cut(s) 188
LmnI GCTCC 2 cut(s) 152, 854
Lsp1109I GCAGC 3 cut(s) 83, 421, 909
LweI GCATC 3 cut(s) 258, 664, 799
MaeI CTAG 1 cut(s) 734
MaeII ACGT 2 cut(s) 131, 596
MaeIII GTNAC 3 cut(s) 13, 385, 611
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 1 cut(s) 85
MfeI CAATTG 1 cut(s) 428
MhlI GDGCHC 2 cut(s) 584, 859
MlsI TGGCCA 1 cut(s) 828
MluCI AATT 3 cut(s) 202, 408, 428
MluNI TGGCCA 1 cut(s) 828
MlyI GAGTC 2 cut(s) 264, 620
MmeI TCCRAC 1 cut(s) 467
Mox20I TGGCCA 1 cut(s) 828
MroI TCCGGA 1 cut(s) 548
MscI TGGCCA 1 cut(s) 828
MseI TTAA 2 cut(s) 39, 759
MslI CAYNNNNRTG 1 cut(s) 665
Msp20I TGGCCA 1 cut(s) 828
MspI CCGG 4 cut(s) 186, 236, 549, 638
MspR9I CCNGG 3 cut(s) 186, 236, 842
MunI CAATTG 1 cut(s) 428
MvaI CCWGG 1 cut(s) 842
MwoI GCNNNNNNNGC 2 cut(s) 431, 565
NciI CCSGG 2 cut(s) 186, 236
NdeII GATC 1 cut(s) 188
NlaIII CATG 2 cut(s) 471, 698
NlaIV GGNNCC 2 cut(s) 234, 741
NmeAIII GCCGAG 2 cut(s) 551, 843
NmuCI GTSAC 2 cut(s) 385, 611
NspI RCATGY 1 cut(s) 698
PaeI GCATGC 1 cut(s) 698
PcsI WCGNNNNNNNCGW 2 cut(s) 572, 590
PfeI GAWTC 3 cut(s) 99, 194, 439
PflFI GACNNNGTC 1 cut(s) 595
PkrI GCNGC 4 cut(s) 70, 73, 436, 899
PleI GAGTC 2 cut(s) 263, 620
PpsI GAGTC 2 cut(s) 263, 620
PpuMI RGGWCCY 1 cut(s) 754
Psp124BI GAGCTC 1 cut(s) 859
Psp5II RGGWCCY 1 cut(s) 754
Psp6I CCWGG 1 cut(s) 840
PspGI CCWGG 1 cut(s) 840
PspN4I GGNNCC 2 cut(s) 234, 741
PspPI GGNCC 4 cut(s) 232, 238, 739, 754
PspPPI RGGWCCY 1 cut(s) 754
PsyI GACNNNGTC 1 cut(s) 595
RsaI GTAC 1 cut(s) 776
RsaNI GTAC 1 cut(s) 775
RseI CAYNNNNRTG 1 cut(s) 665
SacI GAGCTC 1 cut(s) 859
SaqAI TTAA 2 cut(s) 39, 759
SatI GCNGC 4 cut(s) 69, 72, 435, 898
Sau3AI GATC 1 cut(s) 188
Sau96I GGNCC 4 cut(s) 232, 238, 739, 754
ScaI AGTACT 1 cut(s) 776
SchI GAGTC 2 cut(s) 264, 620
ScrFI CCNGG 3 cut(s) 186, 236, 842
SduI GDGCHC 2 cut(s) 584, 859
SfaNI GCATC 3 cut(s) 258, 664, 799
SfcI CTRYAG 1 cut(s) 296
SinI GGWCC 4 cut(s) 232, 238, 739, 754
SmiMI CAYNNNNRTG 1 cut(s) 665
SmlI CTYRAG 1 cut(s) 812
SmoI CTYRAG 1 cut(s) 812
SphI GCATGC 1 cut(s) 698
Sse9I AATT 3 cut(s) 202, 408, 428
SsiI CCGC 5 cut(s) 66, 69, 158, 360, 623
SspI AATATT 1 cut(s) 537
SspMI CTAG 1 cut(s) 734
SstI GAGCTC 1 cut(s) 859
StyD4I CCNGG 3 cut(s) 184, 234, 840
StyI CCWWGG 2 cut(s) 399, 823
TaiI ACGT 2 cut(s) 134, 599
TaqI TCGA 1 cut(s) 688
TasI AATT 3 cut(s) 202, 408, 428
TatI WGTACW 1 cut(s) 774
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 3 cut(s) 99, 194, 439
Tru1I TTAA 2 cut(s) 39, 759
Tru9I TTAA 2 cut(s) 39, 759
TseFI GTSAC 2 cut(s) 385, 611
TseI GCWGC 3 cut(s) 71, 434, 897
Tsp45I GTSAC 2 cut(s) 385, 611
TspDTI ATGAA 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 321
Tth111I GACNNNGTC 1 cut(s) 595
VneI GTGCAC 1 cut(s) 580
VpaK11BI GGWCC 4 cut(s) 232, 238, 739, 754
XceI RCATGY 1 cut(s) 698
XcmI CCANNNNNNNNNTGG 1 cut(s) 848
XspI CTAG 1 cut(s) 734
ZraI GACGTC 1 cut(s) 597
ZrmI AGTACT 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.