pycom01g10890

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013308
Physical Location & Seq
Forward (+)
11675508 .. 11677434
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g10890.1

Sequence Viewer

Length: 876 bp
ATGGACTCAGTTGTAACGAAACCCTCTCTCACTTCCTTTAATCTCAGCCCCTTTCAATCCACCACCGCCGCAGCAACCTCCTCCTTCTCCTTCTTCAGATTCTCTCACTCCAGAAAACTCAGAACTTCAACGTCTTCAATCTCCTGCTCCCACAGACCGCCTTCCAATCCAAAATACCCAAAACCCAGATGGGATTCTCATAATTTCCCCCGAAATCCCCTCTGGGTTTTGGTCCCGGTCCTCCAAAGCATCAGAGTCTTGGCCTCCTCACGAACCCAGAAGTGGGTTTCTTTCCGACAGGCTTACAGAGGGCCAGAGAGTTTCGTGGAAGCAAAAAGCAATGACTTTTTACACAATAGCGGGATTGGGGTGGCGCTGCTGAGCGTGACGACCAATGCCAAGGTGAAAATTAGTCCTTTCGTGGCGCAATTGGCTGCGAATCCGACCTTTGTTTCGGGGTTTTTCGCATGGTTTATGGCGCAGTCAATGAAGGTTTTGCTGAACTTCTTTGTGGAGAGGAAGTGGGATTTCAGAATATTGTATTCCTCCGGAGGTATGCCGTCGTCGCACTCGGCGTTGTGCACGGCATTGACGACGTCTGTGGCGCTCTGTCACGGTGTCGCGGACTCGCTTTTTCCGGTTAGTTTGGGTTTCAGTCTCATTGTTATGTATGATGCTATTGGTGTTCGACGGCATGCTGGTATGCAAGCAGAGGTCCTTAACATAGTCGTTGAGTACTTGTTCGAAGGGCATCCCATCAGCCAGAAAAAGCTCAAGGAACTCCTTGGCCACACTCCCTCCCAGGTTATTGGTGGAGCTCTCCTCGGCATTGTGGTCGCTTGCGTTTGTTGTCAGGGCAGCTTGGTTGCCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

292

Amino Acids

31.84

Weight (kDa)

9.87

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 146 - 279 1.4e-48 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61770
fragaria_vesca FvH4_7g16450 FvH4_7g16450
malus_domestica MD01G1080900.v1.1
prunus_persica Prupe.2G188600_v2.0.a1 Prupe.2G188600_v2.0.a1
pyrus_communis pycom01g10890
rosa_chinensis RchiOBHm_Chr1g0359491
rosa_laevigata RLG00000027865
rosa_multiflora Rmu_sc0002556.1_g000008
rosa_roxburghii Rroxscaffold_4G00296960
rosa_rugosa Rorug01G0271600 Rorug01G0271700
rosa_samantha Rh1AG285100 Rh1BG251200 Rh1CG269000 Rh1DG280300
rosa_wichuraiana Rw1G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 599
AccII CGCG 1 cut(s) 623
AccIII TCCGGA 1 cut(s) 548
AciI CCGC 5 cut(s) 66, 69, 158, 360, 623
AcoI YGGCCR 1 cut(s) 787
AcuI CTGAAG 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 1 cut(s) 737
AfiI CCNNNNNNNGG 2 cut(s) 282, 283
AgsI TTSAA 3 cut(s) 56, 129, 138
AjnI CCWGG 1 cut(s) 801
AluBI AGCT 3 cut(s) 772, 818, 861
AluI AGCT 3 cut(s) 772, 818, 861
Alw21I GWGCWC 2 cut(s) 584, 820
Alw26I GTCTC 1 cut(s) 662
Alw44I GTGCAC 1 cut(s) 580
Aor13HI TCCGGA 1 cut(s) 548
AoxI GGCC 3 cut(s) 261, 311, 787
ApaLI GTGCAC 1 cut(s) 580
ApeKI GCWGC 4 cut(s) 71, 376, 434, 858
ArsI GACNNNNNNTTYG 2 cut(s) 436, 468
AspLEI GCGC 4 cut(s) 376, 427, 481, 607
AspS9I GGNCC 4 cut(s) 232, 238, 311, 715
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 415
AsuII TTCGAA 1 cut(s) 744
AvaII GGWCC 3 cut(s) 232, 238, 715
BaeGI GKGCMC 1 cut(s) 584
BalI TGGCCA 1 cut(s) 789
BanII GRGCYC 1 cut(s) 820
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 584, 820
BbvI GCAGC 4 cut(s) 83, 363, 421, 870
BccI CCATC 2 cut(s) 183, 764
BceAI ACGGC 3 cut(s) 544, 600, 707
BcgI CGANNNNNNTGC 2 cut(s) 817, 851
BciT130I CCWGG 1 cut(s) 803
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 662
BfoI RGCGCY 2 cut(s) 377, 608
BisI GCNGC 5 cut(s) 69, 72, 377, 435, 859
BlpI GCTNAGC 1 cut(s) 380
BlsI GCNGC 5 cut(s) 70, 73, 378, 436, 860
BmcAI AGTACT 1 cut(s) 737
Bme1390I CCNGG 2 cut(s) 236, 803
Bme18I GGWCC 3 cut(s) 232, 238, 715
BmgT120I GGNCC 4 cut(s) 232, 238, 311, 715
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 236, 803
BmsI GCATC 3 cut(s) 258, 664, 760
BpiI GAAGAC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 807, 839
BpmI CTGGAG 1 cut(s) 94
Bpu1102I GCTNAGC 1 cut(s) 380
Bpu14I TTCGAA 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 399, 784, 801, 823
BsaWI WCCGGW 2 cut(s) 548, 637
BsaXI ACNNNNNCTCC 4 cut(s) 506, 536, 782, 812
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 283
Bse3DI GCAATG 1 cut(s) 346
BseAI TCCGGA 1 cut(s) 548
BseBI CCWGG 1 cut(s) 803
BseDI CCNNGG 4 cut(s) 399, 784, 801, 823
BseGI GGATG 1 cut(s) 751
BseLI CCNNNNNNNGG 2 cut(s) 282, 283
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 4 cut(s) 21, 58, 133, 371
BseRI GAGGAG 3 cut(s) 70, 256, 812
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 4 cut(s) 83, 363, 421, 870
Bsh1236I CGCG 1 cut(s) 623
BshFI GGCC 3 cut(s) 263, 313, 789
BsiHKAI GWGCWC 2 cut(s) 584, 820
BsiSI CCGG 3 cut(s) 236, 549, 638
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 282, 283
BsmAI GTCTC 1 cut(s) 662
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 3 cut(s) 263, 313, 789
Bsp119I TTCGAA 1 cut(s) 744
Bsp1286I GDGCHC 2 cut(s) 584, 820
Bsp13I TCCGGA 1 cut(s) 548
Bsp1720I GCTNAGC 1 cut(s) 380
BspACI CCGC 5 cut(s) 66, 69, 158, 360, 623
BspANI GGCC 3 cut(s) 263, 313, 789
BspCNI CTCAG 4 cut(s) 20, 57, 132, 372
BspEI TCCGGA 1 cut(s) 548
BspFNI CGCG 1 cut(s) 623
BspLI GGNNCC 1 cut(s) 234
BspT104I TTCGAA 1 cut(s) 744
BsrDI GCAATG 1 cut(s) 346
BssECI CCNNGG 4 cut(s) 399, 784, 801, 823
BssNI GRCGYC 1 cut(s) 596
BssT1I CCWWGG 2 cut(s) 399, 784
Bst2UI CCWGG 1 cut(s) 803
Bst4CI ACNGT 1 cut(s) 617
BstACI GRCGYC 1 cut(s) 596
BstBI TTCGAA 1 cut(s) 744
BstC8I GCNNGC 3 cut(s) 696, 708, 841
BstDEI CTNAG 4 cut(s) 7, 44, 119, 380
BstF5I GGATG 1 cut(s) 751
BstFNI CGCG 1 cut(s) 623
BstH2I RGCGCY 2 cut(s) 377, 608
BstHHI GCGC 4 cut(s) 376, 427, 481, 607
BstMAI GTCTC 1 cut(s) 662
BstMWI GCNNNNNNNGC 2 cut(s) 431, 565
BstNI CCWGG 1 cut(s) 803
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 2 cut(s) 234, 801
BstSLI GKGCMC 1 cut(s) 584
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 4 cut(s) 83, 363, 421, 870
BstV2I GAAGAC 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 809
BsuRI GGCC 3 cut(s) 263, 313, 789
BtsCI GGATG 1 cut(s) 751
Cac8I GCNNGC 3 cut(s) 696, 708, 841
CfoI GCGC 4 cut(s) 376, 427, 481, 607
Cfr13I GGNCC 4 cut(s) 232, 238, 311, 715
Csp6I GTAC 1 cut(s) 736
CviAII CATG 2 cut(s) 468, 695
CviQI GTAC 1 cut(s) 736
DdeI CTNAG 4 cut(s) 7, 44, 119, 380
EaeI YGGCCR 1 cut(s) 787
Ecl136II GAGCTC 1 cut(s) 818
Eco130I CCWWGG 2 cut(s) 399, 784
Eco24I GRGCYC 1 cut(s) 820
Eco47I GGWCC 3 cut(s) 232, 238, 715
Eco53kI GAGCTC 1 cut(s) 818
Eco57I CTGAAG 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 818
EcoO109I RGGNCCY 1 cut(s) 715
EcoRII CCWGG 1 cut(s) 801
EcoT14I CCWWGG 2 cut(s) 399, 784
EcoT38I GRGCYC 1 cut(s) 820
ErhI CCWWGG 2 cut(s) 399, 784
FaeI CATG 2 cut(s) 471, 698
FaiI YATR 9 cut(s) 201, 469, 476, 557, 668, 672, 696, 704, 725
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 467, 694
FauI CCCGC 1 cut(s) 353
Fnu4HI GCNGC 5 cut(s) 69, 72, 377, 435, 859
FokI GGATG 1 cut(s) 738
FriOI GRGCYC 1 cut(s) 820
Fsp4HI GCNGC 5 cut(s) 69, 72, 377, 435, 859
GlaI GCGC 4 cut(s) 375, 426, 480, 606
GluI GCNGC 5 cut(s) 69, 72, 377, 435, 859
GsuI CTGGAG 1 cut(s) 94
HaeII RGCGCY 2 cut(s) 377, 608
HaeIII GGCC 3 cut(s) 263, 313, 789
HapII CCGG 3 cut(s) 236, 549, 638
HhaI GCGC 4 cut(s) 376, 427, 481, 607
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 2 cut(s) 471, 698
Hin6I GCGC 4 cut(s) 374, 425, 479, 605
HinP1I GCGC 4 cut(s) 374, 425, 479, 605
HinfI GANTC 6 cut(s) 5, 99, 194, 255, 439, 626
HpaII CCGG 3 cut(s) 236, 549, 638
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 582
Hpy188I TCNGA 6 cut(s) 98, 122, 254, 296, 444, 533
Hpy188III TCNNGA 4 cut(s) 111, 270, 549, 873
Hpy8I GTNNAC 1 cut(s) 582
Hpy99I CGWCG 4 cut(s) 565, 568, 598, 693
HpyAV CCTTC 5 cut(s) 94, 100, 171, 484, 740
HpyCH4III ACNGT 1 cut(s) 617
HpyCH4IV ACGT 2 cut(s) 131, 596
HpyCH4V TGCA 2 cut(s) 582, 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 565
HpyF3I CTNAG 4 cut(s) 7, 44, 119, 380
HpySE526I ACGT 2 cut(s) 131, 596
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 2 cut(s) 471, 698
HspAI GCGC 4 cut(s) 374, 425, 479, 605
Kpn2I TCCGGA 1 cut(s) 548
LmnI GCTCC 2 cut(s) 152, 815
Lsp1109I GCAGC 4 cut(s) 83, 363, 421, 870
LweI GCATC 3 cut(s) 258, 664, 760
MaeII ACGT 2 cut(s) 131, 596
MaeIII GTNAC 3 cut(s) 13, 385, 611
MboII GAAGA 2 cut(s) 85, 126
MfeI CAATTG 1 cut(s) 428
MhlI GDGCHC 2 cut(s) 584, 820
MlsI TGGCCA 1 cut(s) 789
MluCI AATT 3 cut(s) 202, 408, 428
MluNI TGGCCA 1 cut(s) 789
MlyI GAGTC 2 cut(s) 264, 620
MmeI TCCRAC 2 cut(s) 319, 467
Mox20I TGGCCA 1 cut(s) 789
MroI TCCGGA 1 cut(s) 548
MscI TGGCCA 1 cut(s) 789
MseI TTAA 2 cut(s) 39, 720
MslI CAYNNNNRTG 1 cut(s) 665
Msp20I TGGCCA 1 cut(s) 789
MspI CCGG 3 cut(s) 236, 549, 638
MspR9I CCNGG 2 cut(s) 236, 803
MunI CAATTG 1 cut(s) 428
MvaI CCWGG 1 cut(s) 803
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 2 cut(s) 431, 565
NciI CCSGG 1 cut(s) 236
NlaIII CATG 2 cut(s) 471, 698
NlaIV GGNNCC 1 cut(s) 234
NmeAIII GCCGAG 2 cut(s) 551, 804
NmuCI GTSAC 2 cut(s) 385, 611
NspI RCATGY 1 cut(s) 698
NspV TTCGAA 1 cut(s) 744
PaeI GCATGC 1 cut(s) 698
PcsI WCGNNNNNNNCGW 2 cut(s) 572, 590
PfeI GAWTC 3 cut(s) 99, 194, 439
PflFI GACNNNGTC 1 cut(s) 595
PkrI GCNGC 5 cut(s) 70, 73, 378, 436, 860
PleI GAGTC 2 cut(s) 263, 620
PpsI GAGTC 2 cut(s) 263, 620
PpuMI RGGWCCY 1 cut(s) 715
Psp124BI GAGCTC 1 cut(s) 820
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 1 cut(s) 801
PspGI CCWGG 1 cut(s) 801
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 4 cut(s) 232, 238, 311, 715
PspPPI RGGWCCY 1 cut(s) 715
PsyI GACNNNGTC 1 cut(s) 595
RsaI GTAC 1 cut(s) 737
RsaNI GTAC 1 cut(s) 736
RseI CAYNNNNRTG 1 cut(s) 665
SacI GAGCTC 1 cut(s) 820
SaqAI TTAA 2 cut(s) 39, 720
SatI GCNGC 5 cut(s) 69, 72, 377, 435, 859
Sau96I GGNCC 4 cut(s) 232, 238, 311, 715
ScaI AGTACT 1 cut(s) 737
SchI GAGTC 2 cut(s) 264, 620
ScrFI CCNGG 2 cut(s) 236, 803
SduI GDGCHC 2 cut(s) 584, 820
SfaNI GCATC 3 cut(s) 258, 664, 760
SfuI TTCGAA 1 cut(s) 744
SinI GGWCC 3 cut(s) 232, 238, 715
SmiMI CAYNNNNRTG 1 cut(s) 665
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
SphI GCATGC 1 cut(s) 698
Sse9I AATT 3 cut(s) 202, 408, 428
SsiI CCGC 5 cut(s) 66, 69, 158, 360, 623
SspI AATATT 1 cut(s) 537
SstI GAGCTC 1 cut(s) 820
StyD4I CCNGG 2 cut(s) 234, 801
StyI CCWWGG 2 cut(s) 399, 784
TaaI ACNGT 1 cut(s) 617
TaiI ACGT 2 cut(s) 134, 599
TaqI TCGA 2 cut(s) 688, 744
TasI AATT 3 cut(s) 202, 408, 428
TatI WGTACW 1 cut(s) 735
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 3 cut(s) 99, 194, 439
Tru1I TTAA 2 cut(s) 39, 720
Tru9I TTAA 2 cut(s) 39, 720
TseFI GTSAC 2 cut(s) 385, 611
TseI GCWGC 4 cut(s) 71, 376, 434, 858
Tsp45I GTSAC 2 cut(s) 385, 611
TspDTI ATGAA 1 cut(s) 503
Tth111I GACNNNGTC 1 cut(s) 595
VneI GTGCAC 1 cut(s) 580
VpaK11BI GGWCC 3 cut(s) 232, 238, 715
XceI RCATGY 1 cut(s) 698
XcmI CCANNNNNNNNNTGG 2 cut(s) 186, 809
ZraI GACGTC 1 cut(s) 597
ZrmI AGTACT 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.