Rorug01G0271700

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013308
Physical Location & Seq
Forward (+)
38413994 .. 38415565
1572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0271700.1

Sequence Viewer

Length: 900 bp
ATGGCAGAAACAGTGAAGAGAAGGTATGCAGTTGTTACAGGTTCGAACAAGGGGGTTGGATTTGGAATAGTAAAGCAACTAGCTACAAATGGGGTCATGACAGTATTAACTGCTAGAGATGAGAAGAAGGGTATTGAAGCTGTTGAAAAACTGAAAGAGTGTTGCCTCTCTAACCTTGTTGTTTTTCATCAACTTGATGTCACAGACCCTGATAGCATCGTTTCCCTCGCAGATTTTGTCAAAACCCATTTTGGTAAACTGGATATCTTGGTGAACAATGCAGCAGTTAATGGACTCACTAACGAACCTGAAGCTTTCATAGCTGCAGCTGCAAATAGGGGAAAGGAAGGTGTGGACGTCCACTGGAGTGATTTTGCAACTCAGACATACGAGTTAGGCAAAGAATGTCTAAAAACAAACTACTATGGCACCAAGAAAATTACCGAAGCACTTGTTCCTCTCCTTGAGCTATCGGATTCACCAAGAGTAGTCAATATTAGTTCTGGCGCAGGGAGGTTAAAGCTTATACCGAACGAGTGGGCCAAAGGGGTGTTAGGTGATGCTGAGAAACTTACAGAGGAGAGAGTAGATGAGGTTCTGAATGAGTTTCTAAAAGACTTCAAAGAAGATATGCTAGAAACCAAAGGCTGGCCACTTTCACTTTCTGCTTATATACTCTCCAAAGCTTCCTTGAATGCATACACTAGAATTCTGGCCAAGAAGTACAAAAATTTCTGTATCAATTGCGTCTGCCCTGGATTTGTCAAAACAGATATGACCTTCAATGCAGGCATCTTAACCACTGATGAAGCTGCTGAAAATGTTACCAGGCTAGCTGTGTTTCCAAATGGCAATCCCTCCGGTATCTTCTTCTTTCAACAAGAAGCATCATCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

299

Amino Acids

32.79

Weight (kDa)

5.6

Isoelectric Point (pI)

19.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 9 - 174 2.3e-23 short chain dehydrogenase
adh_short_C2 PF13561 16 - 169 1.2e-14 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 220 - 278 4.7e-06 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61770
fragaria_vesca FvH4_7g16450 FvH4_7g16450
malus_domestica MD01G1080900.v1.1
prunus_persica Prupe.2G188600_v2.0.a1 Prupe.2G188600_v2.0.a1
pyrus_communis pycom01g10890
rosa_chinensis RchiOBHm_Chr1g0359491
rosa_laevigata RLG00000027865
rosa_multiflora Rmu_sc0002556.1_g000008
rosa_roxburghii Rroxscaffold_4G00296960
rosa_rugosa Rorug01G0271600 Rorug01G0271700
rosa_samantha Rh1AG285100 Rh1BG251200 Rh1CG269000 Rh1DG280300
rosa_wichuraiana Rw1G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 360
AccB1I GGYRCC 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 648
AcoI YGGCCR 2 cut(s) 650, 714
AcsI RAATTY 2 cut(s) 708, 730
AcuI CTGAAG 1 cut(s) 330
AcyI GRCGYC 1 cut(s) 357
AfaI GTAC 1 cut(s) 725
AfiI CCNNNNNNNGG 1 cut(s) 648
AgsI TTSAA 6 cut(s) 137, 146, 622, 694, 784, 878
AjnI CCWGG 2 cut(s) 754, 827
AleI CACNNNNGTG 1 cut(s) 366
AlwNI CAGNNNCTG 1 cut(s) 209
AoxI GGCC 3 cut(s) 540, 650, 714
ApeKI GCWGC 5 cut(s) 281, 323, 326, 329, 812
ApoI RAATTY 2 cut(s) 708, 730
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 540
AsuHPI GGTGA 3 cut(s) 283, 471, 569
AsuII TTCGAA 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 832
BalI TGGCCA 2 cut(s) 652, 716
BanI GGYRCC 1 cut(s) 428
BbvI GCAGC 5 cut(s) 293, 310, 316, 338, 799
BciT130I CCWGG 2 cut(s) 756, 829
BfaI CTAG 5 cut(s) 80, 114, 635, 705, 833
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 5 cut(s) 282, 324, 327, 330, 813
BlsI GCNGC 5 cut(s) 283, 325, 328, 331, 814
Bme1390I CCNGG 2 cut(s) 756, 829
BmgT120I GGNCC 1 cut(s) 540
BmiI GGNNCC 1 cut(s) 430
BmrFI CCNGG 2 cut(s) 756, 829
BmsI GCATC 4 cut(s) 225, 550, 801, 896
BmtI GCTAGC 1 cut(s) 836
BpmI CTGGAG 1 cut(s) 385
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 754
BsaWI WCCGGW 1 cut(s) 860
Bsc4I CCNNNNNNNGG 1 cut(s) 648
Bse1I ACTGG 2 cut(s) 264, 368
BseBI CCWGG 2 cut(s) 756, 829
BseDI CCNNGG 1 cut(s) 754
BseGI GGATG 1 cut(s) 890
BseLI CCNNNNNNNGG 1 cut(s) 648
BseMII CTCAG 2 cut(s) 395, 555
BseNI ACTGG 2 cut(s) 264, 368
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 5 cut(s) 293, 310, 316, 338, 799
BshFI GGCC 3 cut(s) 542, 652, 716
BshNI GGYRCC 1 cut(s) 428
BsiSI CCGG 1 cut(s) 861
BslI CCNNNNNNNGG 1 cut(s) 648
BsmI GAATGC 1 cut(s) 700
BsnI GGCC 3 cut(s) 542, 652, 716
Bsp119I TTCGAA 1 cut(s) 44
BspANI GGCC 3 cut(s) 542, 652, 716
BspCNI CTCAG 2 cut(s) 394, 556
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 430
BspMAI CTGCAG 1 cut(s) 328
BspOI GCTAGC 1 cut(s) 836
BspT104I TTCGAA 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 428
BsrI ACTGG 2 cut(s) 264, 368
BssECI CCNNGG 1 cut(s) 754
BssNI GRCGYC 1 cut(s) 357
Bst2UI CCWGG 2 cut(s) 756, 829
Bst4CI ACNGT 2 cut(s) 13, 103
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 3 cut(s) 650, 790, 834
BstDEI CTNAG 2 cut(s) 381, 564
BstF5I GGATG 1 cut(s) 890
BstHHI GCGC 1 cut(s) 509
BstMWI GCNNNNNNNGC 2 cut(s) 320, 329
BstNI CCWGG 2 cut(s) 756, 829
BstSCI CCNGG 2 cut(s) 754, 827
BstSFI CTRYAG 1 cut(s) 324
BstV1I GCAGC 5 cut(s) 293, 310, 316, 338, 799
BsuRI GGCC 3 cut(s) 542, 652, 716
BtsCI GGATG 1 cut(s) 890
BtsIMutI CAGTG 3 cut(s) 18, 361, 801
Cac8I GCNNGC 3 cut(s) 650, 790, 834
CaiI CAGNNNCTG 1 cut(s) 209
CciI TCATGA 1 cut(s) 96
CfoI GCGC 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 540
CseI GACGC 1 cut(s) 736
Csp6I GTAC 1 cut(s) 724
CviAII CATG 1 cut(s) 97
CviQI GTAC 1 cut(s) 724
DdeI CTNAG 2 cut(s) 381, 564
EaeI YGGCCR 2 cut(s) 650, 714
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 708
EcoRII CCWGG 2 cut(s) 754, 827
EcoRV GATATC 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 700
FaeI CATG 1 cut(s) 100
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 5 cut(s) 282, 324, 327, 330, 813
FokI GGATG 1 cut(s) 877
Fsp4HI GCNGC 5 cut(s) 282, 324, 327, 330, 813
FspBI CTAG 5 cut(s) 80, 114, 635, 705, 833
GlaI GCGC 1 cut(s) 508
GluI GCNGC 5 cut(s) 282, 324, 327, 330, 813
GsuI CTGGAG 1 cut(s) 385
HaeIII GGCC 3 cut(s) 542, 652, 716
HapII CCGG 1 cut(s) 861
HgaI GACGC 1 cut(s) 736
HhaI GCGC 1 cut(s) 509
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 1 cut(s) 100
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HindIII AAGCTT 3 cut(s) 312, 521, 684
HinfI GANTC 2 cut(s) 294, 476
HpaII CCGG 1 cut(s) 861
HphI GGTGA 3 cut(s) 283, 471, 569
Hpy166II GTNNAC 4 cut(s) 257, 274, 355, 361
Hpy188I TCNGA 3 cut(s) 384, 475, 600
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 4 cut(s) 257, 274, 355, 361
HpyAV CCTTC 4 cut(s) 15, 121, 341, 790
HpyCH4III ACNGT 2 cut(s) 13, 103
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 7 cut(s) 29, 281, 326, 332, 377, 698, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 329
HpyF3I CTNAG 2 cut(s) 381, 564
HpySE526I ACGT 1 cut(s) 357
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 1 cut(s) 100
HspAI GCGC 1 cut(s) 507
Lsp1109I GCAGC 5 cut(s) 293, 310, 316, 338, 799
LweI GCATC 4 cut(s) 225, 550, 801, 896
MaeI CTAG 5 cut(s) 80, 114, 635, 705, 833
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 3 cut(s) 34, 199, 823
MboII GAAGA 5 cut(s) 28, 136, 638, 859, 862
MfeI CAATTG 1 cut(s) 742
MlsI TGGCCA 2 cut(s) 652, 716
MluCI AATT 4 cut(s) 438, 708, 730, 742
MluNI TGGCCA 2 cut(s) 652, 716
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 7 cut(s) 176, 236, 468, 507, 571, 586, 868
Mox20I TGGCCA 2 cut(s) 652, 716
Mph1103I ATGCAT 1 cut(s) 700
MscI TGGCCA 2 cut(s) 652, 716
MseI TTAA 4 cut(s) 107, 288, 518, 797
MslI CAYNNNNRTG 1 cut(s) 366
Msp20I TGGCCA 2 cut(s) 652, 716
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 1 cut(s) 861
MspR9I CCNGG 2 cut(s) 756, 829
MunI CAATTG 1 cut(s) 742
Mva1269I GAATGC 1 cut(s) 700
MvaI CCWGG 2 cut(s) 756, 829
MwoI GCNNNNNNNGC 2 cut(s) 320, 329
NheI GCTAGC 1 cut(s) 832
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 430
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 700
NspV TTCGAA 1 cut(s) 44
OliI CACNNNNGTG 1 cut(s) 366
PagI TCATGA 1 cut(s) 96
PctI GAATGC 1 cut(s) 700
PfeI GAWTC 1 cut(s) 476
PflMI CCANNNNNTGG 1 cut(s) 648
PkrI GCNGC 5 cut(s) 283, 325, 328, 331, 814
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 754, 827
PspGI CCWGG 2 cut(s) 754, 827
PspN4I GGNNCC 1 cut(s) 430
PspPI GGNCC 1 cut(s) 540
PsrI GAACNNNNNNTAC 2 cut(s) 579, 611
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 1 cut(s) 725
RsaNI GTAC 1 cut(s) 724
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 4 cut(s) 107, 288, 518, 797
SatI GCNGC 5 cut(s) 282, 324, 327, 330, 813
Sau96I GGNCC 1 cut(s) 540
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 756, 829
SfaNI GCATC 4 cut(s) 225, 550, 801, 896
SfcI CTRYAG 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 4 cut(s) 438, 708, 730, 742
SspI AATATT 1 cut(s) 496
SspMI CTAG 5 cut(s) 80, 114, 635, 705, 833
StyD4I CCNGG 2 cut(s) 754, 827
TaaI ACNGT 2 cut(s) 13, 103
TaiI ACGT 1 cut(s) 360
TaqI TCGA 1 cut(s) 44
TasI AATT 4 cut(s) 438, 708, 730, 742
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 4 cut(s) 107, 288, 518, 797
Tru9I TTAA 4 cut(s) 107, 288, 518, 797
TscAI CASTG 3 cut(s) 18, 368, 808
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 5 cut(s) 281, 323, 326, 329, 812
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 3 cut(s) 176, 307, 822
TspRI CASTG 3 cut(s) 18, 368, 808
Van91I CCANNNNNTGG 1 cut(s) 648
XapI RAATTY 2 cut(s) 708, 730
XspI CTAG 5 cut(s) 80, 114, 635, 705, 833
ZraI GACGTC 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.