Prupe.2G188600_v2.0.a1

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013308
Physical Location & Seq
Forward (+)
22870693 .. 22873569
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G188600.1

Sequence Viewer

Length: 882 bp
ATGGACTCAGTTGTAACAAAGCACGCATTCAGTTCCTTCAAGCTCGGCCCCTCACAGACCCAACAGCCCCTTCACACCACCACAACACACTTCTCCTTCTTCAGATTCTCTCACTTCAAAAAACTCAGAAAATCAACATCTTCAATCTCTTGCTCTCATATACCTCCTTCCAATCCCAGACGCCCAAAATCCATATGGGATTCTCATAACTTTCCCTTAAATCCCATCTGGTTCTTGGTCCCAGTCCTCCAAAGCATCAGAGTTTTAGCTTCTTCACGAACCCAGAAGTGGGTTTCTTTCTTACAGGCTTACAGAGGCACGGAGTGTGTTGTACATGAAAAAAATAATGATTTTTTACATAATAGCGGGATTGGAGTTGCTTTGTTAAGCGTGACATCCAATGCCAAAGTAAAAATTAGTCCTTTCGTGGCTCAATTGGCTGCGAATCCGACCTTTGTTTCGGGCTTGTTCGCGTGGTTTATGGCCCAGTCGACAAAGGTGTTGTTGAATTTCTTTGTGGAGAGGAAATGGGATTTTAGAATATTGTATGCTTCTGGAGGCATGCCTTCGTCGCACTCGGCGTTGTGCACGGCTTTGACGACCTCTGTGGCTCTTTGTCATGGTGTTGCAGACTCGCTTTTTCCTGTTTGTTTGGGGTTCAGTCTCATTGTTATGTATGATGCTATTGGTGTTCGACGACATGCTGGTATGCAAGCAGAGGTTCTTAATATAGTCGTTGAGTACTTGTTCGAAGGGCATCCCATCAGCCAAAAGAAGCTCAAGGAACTGCTTGGCCACACTCCCTCCCAGGTTATTGCTGGAGCTCTCCTCGGCATCGTAGTCGCTTGTGTTTGTTGTCAGGGAAGCTTGGTTGCTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

294

Amino Acids

32.24

Weight (kDa)

9.61

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61770
fragaria_vesca FvH4_7g16450 FvH4_7g16450
malus_domestica MD01G1080900.v1.1
prunus_persica Prupe.2G188600_v2.0.a1 Prupe.2G188600_v2.0.a1
pyrus_communis pycom01g10890
rosa_chinensis RchiOBHm_Chr1g0359491
rosa_laevigata RLG00000027865
rosa_multiflora Rmu_sc0002556.1_g000008
rosa_roxburghii Rroxscaffold_4G00296960
rosa_rugosa Rorug01G0271600 Rorug01G0271700
rosa_samantha Rh1AG285100 Rh1BG251200 Rh1CG269000 Rh1DG280300
rosa_wichuraiana Rw1G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 491
AccII CGCG 1 cut(s) 473
AciI CCGC 1 cut(s) 366
AcoI YGGCCR 1 cut(s) 793
AcsI RAATTY 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 85
AcyI GRCGYC 1 cut(s) 181
AdeI CACNNNGTG 1 cut(s) 324
AfaI GTAC 2 cut(s) 333, 743
AfiI CCNNNNNNNGG 2 cut(s) 288, 289
AgsI TTSAA 4 cut(s) 40, 118, 144, 508
AjnI CCWGG 1 cut(s) 807
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AluBI AGCT 5 cut(s) 43, 269, 778, 824, 867
AluI AGCT 5 cut(s) 43, 269, 778, 824, 867
Alw21I GWGCWC 2 cut(s) 590, 826
Alw26I GTCTC 1 cut(s) 668
Alw44I GTGCAC 1 cut(s) 586
AoxI GGCC 3 cut(s) 46, 483, 793
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 508
ArsI GACNNNNNNTTYG 2 cut(s) 442, 474
AspS9I GGNCC 3 cut(s) 47, 238, 484
AsuII TTCGAA 1 cut(s) 750
AvaII GGWCC 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 590
BalI TGGCCA 1 cut(s) 795
BanII GRGCYC 1 cut(s) 826
Bbv12I GWGCWC 2 cut(s) 590, 826
BbvI GCAGC 1 cut(s) 427
BccI CCATC 2 cut(s) 233, 770
BceAI ACGGC 1 cut(s) 606
BcgI CGANNNNNNTGC 2 cut(s) 823, 857
BciT130I CCWGG 1 cut(s) 809
BcoDI GTCTC 1 cut(s) 668
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
BmcAI AGTACT 1 cut(s) 743
Bme1390I CCNGG 1 cut(s) 809
Bme18I GGWCC 1 cut(s) 238
BmgT120I GGNCC 3 cut(s) 47, 238, 484
BmiI GGNNCC 2 cut(s) 49, 240
BmrFI CCNGG 1 cut(s) 809
BmrI ACTGGG 2 cut(s) 236, 481
BmsI GCATC 4 cut(s) 264, 670, 766, 843
BmuI ACTGGG 2 cut(s) 236, 481
BplI GAGNNNNNCTC 2 cut(s) 813, 845
BpmI CTGGAG 2 cut(s) 576, 840
Bpu14I TTCGAA 1 cut(s) 750
BpuEI CTTGAG 1 cut(s) 764
BsaHI GRCGYC 1 cut(s) 181
BsaJI CCNNGG 2 cut(s) 807, 829
BsaXI ACNNNNNCTCC 2 cut(s) 788, 818
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 289
Bse1I ACTGG 2 cut(s) 242, 487
BseBI CCWGG 1 cut(s) 809
BseDI CCNNGG 2 cut(s) 807, 829
BseGI GGATG 2 cut(s) 395, 757
BseLI CCNNNNNNNGG 2 cut(s) 288, 289
BseMII CTCAG 2 cut(s) 21, 139
BseNI ACTGG 2 cut(s) 242, 487
BseRI GAGGAG 1 cut(s) 818
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 1 cut(s) 427
Bsh1236I CGCG 1 cut(s) 473
BshFI GGCC 3 cut(s) 48, 485, 795
BsiHKAI GWGCWC 2 cut(s) 590, 826
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 288, 289
BsmAI GTCTC 1 cut(s) 668
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 3 cut(s) 48, 485, 795
Bsp119I TTCGAA 1 cut(s) 750
Bsp1286I GDGCHC 2 cut(s) 590, 826
Bsp1407I TGTACA 1 cut(s) 331
BspACI CCGC 1 cut(s) 366
BspANI GGCC 3 cut(s) 48, 485, 795
BspCNI CTCAG 2 cut(s) 20, 138
BspFNI CGCG 1 cut(s) 473
BspLI GGNNCC 2 cut(s) 49, 240
BspT104I TTCGAA 1 cut(s) 750
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 2 cut(s) 242, 487
BssECI CCNNGG 2 cut(s) 807, 829
BssNI GRCGYC 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 809
BstACI GRCGYC 1 cut(s) 181
BstAUI TGTACA 1 cut(s) 331
BstBI TTCGAA 1 cut(s) 750
BstC8I GCNNGC 3 cut(s) 24, 563, 714
BstDEI CTNAG 2 cut(s) 7, 125
BstF5I GGATG 2 cut(s) 395, 757
BstFNI CGCG 1 cut(s) 473
BstMAI GTCTC 1 cut(s) 668
BstMWI GCNNNNNNNGC 2 cut(s) 437, 571
BstNI CCWGG 1 cut(s) 809
BstNSI RCATGY 2 cut(s) 565, 704
BstSCI CCNGG 1 cut(s) 807
BstSLI GKGCMC 1 cut(s) 590
BstUI CGCG 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 427
BsuRI GGCC 3 cut(s) 48, 485, 795
BtsCI GGATG 2 cut(s) 395, 757
Cac8I GCNNGC 3 cut(s) 24, 563, 714
Cfr13I GGNCC 3 cut(s) 47, 238, 484
CseI GACGC 1 cut(s) 189
Csp6I GTAC 2 cut(s) 332, 742
CviAII CATG 4 cut(s) 335, 562, 620, 701
CviQI GTAC 2 cut(s) 332, 742
DdeI CTNAG 2 cut(s) 7, 125
DraIII CACNNNGTG 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 793
Ecl136II GAGCTC 1 cut(s) 824
Eco24I GRGCYC 1 cut(s) 826
Eco47I GGWCC 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 824
Eco57I CTGAAG 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 824
EcoRII CCWGG 1 cut(s) 807
EcoT38I GRGCYC 1 cut(s) 826
FaeI CATG 4 cut(s) 338, 565, 623, 704
FaqI GGGAC 1 cut(s) 224
FatI CATG 4 cut(s) 334, 561, 619, 700
FauI CCCGC 1 cut(s) 359
FauNDI CATATG 1 cut(s) 194
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 2 cut(s) 382, 744
FriOI GRGCYC 1 cut(s) 826
Fsp4HI GCNGC 1 cut(s) 441
GluI GCNGC 1 cut(s) 441
GsuI CTGGAG 2 cut(s) 576, 840
HaeIII GGCC 3 cut(s) 48, 485, 795
HgaI GACGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 181
Hin1II CATG 4 cut(s) 338, 565, 623, 704
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HindIII AAGCTT 1 cut(s) 865
HinfI GANTC 5 cut(s) 5, 105, 200, 445, 632
Hpy166II GTNNAC 2 cut(s) 492, 588
Hpy188I TCNGA 4 cut(s) 104, 128, 260, 450
Hpy188III TCNNGA 2 cut(s) 276, 555
Hpy8I GTNNAC 2 cut(s) 492, 588
Hpy99I CGWCG 2 cut(s) 574, 699
HpyAV CCTTC 6 cut(s) 46, 80, 106, 177, 576, 746
HpyCH4V TGCA 3 cut(s) 588, 629, 712
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 571
HpyF3I CTNAG 2 cut(s) 7, 125
Hsp92I GRCGYC 1 cut(s) 181
Hsp92II CATG 4 cut(s) 338, 565, 623, 704
LmnI GCTCC 1 cut(s) 821
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 4 cut(s) 264, 670, 766, 843
MaeIII GTNAC 2 cut(s) 13, 391
MboII GAAGA 3 cut(s) 91, 132, 264
MfeI CAATTG 1 cut(s) 434
MhlI GDGCHC 2 cut(s) 590, 826
MlsI TGGCCA 1 cut(s) 795
MluCI AATT 3 cut(s) 414, 434, 508
MluNI TGGCCA 1 cut(s) 795
MlyI GAGTC 1 cut(s) 626
MmeI TCCRAC 1 cut(s) 473
Mox20I TGGCCA 1 cut(s) 795
MscI TGGCCA 1 cut(s) 795
MseI TTAA 3 cut(s) 218, 386, 726
MslI CAYNNNNRTG 1 cut(s) 671
Msp20I TGGCCA 1 cut(s) 795
MspR9I CCNGG 1 cut(s) 809
MunI CAATTG 1 cut(s) 434
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 809
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 437, 571
NdeI CATATG 1 cut(s) 194
NlaIII CATG 4 cut(s) 338, 565, 623, 704
NlaIV GGNNCC 2 cut(s) 49, 240
NmeAIII GCCGAG 3 cut(s) 24, 557, 810
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 2 cut(s) 565, 704
NspV TTCGAA 1 cut(s) 750
PaeI GCATGC 1 cut(s) 565
PcsI WCGNNNNNNNCGW 2 cut(s) 578, 596
PctI GAATGC 1 cut(s) 26
PfeI GAWTC 3 cut(s) 105, 200, 445
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 626
Psp124BI GAGCTC 1 cut(s) 826
Psp6I CCWGG 1 cut(s) 807
PspGI CCWGG 1 cut(s) 807
PspN4I GGNNCC 2 cut(s) 49, 240
PspPI GGNCC 3 cut(s) 47, 238, 484
RsaI GTAC 2 cut(s) 333, 743
RsaNI GTAC 2 cut(s) 332, 742
RseI CAYNNNNRTG 1 cut(s) 671
SacI GAGCTC 1 cut(s) 826
SalI GTCGAC 1 cut(s) 490
SaqAI TTAA 3 cut(s) 218, 386, 726
SatI GCNGC 1 cut(s) 441
Sau96I GGNCC 3 cut(s) 47, 238, 484
ScaI AGTACT 1 cut(s) 743
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 1 cut(s) 809
SduI GDGCHC 2 cut(s) 590, 826
SfaNI GCATC 4 cut(s) 264, 670, 766, 843
SfuI TTCGAA 1 cut(s) 750
SinI GGWCC 1 cut(s) 238
SmiMI CAYNNNNRTG 1 cut(s) 671
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
SphI GCATGC 1 cut(s) 565
Sse9I AATT 3 cut(s) 414, 434, 508
SsiI CCGC 1 cut(s) 366
SspI AATATT 1 cut(s) 543
SstI GAGCTC 1 cut(s) 826
StyD4I CCNGG 1 cut(s) 807
TaqI TCGA 3 cut(s) 491, 694, 750
TasI AATT 3 cut(s) 414, 434, 508
TatI WGTACW 2 cut(s) 331, 741
TfiI GAWTC 3 cut(s) 105, 200, 445
Tru1I TTAA 3 cut(s) 218, 386, 726
Tru9I TTAA 3 cut(s) 218, 386, 726
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 1 cut(s) 351
TspGWI ACGGA 1 cut(s) 335
VneI GTGCAC 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 1 cut(s) 508
XceI RCATGY 2 cut(s) 565, 704
XcmI CCANNNNNNNNNTGG 3 cut(s) 192, 232, 815
XmiI GTMKAC 1 cut(s) 491
ZrmI AGTACT 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.