Rh1BG251200

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013308
Physical Location & Seq
Forward (+)
37986667 .. 37989888
3222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG251200.1

Sequence Viewer

Length: 792 bp
ATGGACTCCATCACAACAACAAAGCACCCATTCAGCTCCTTCATTCTCAGCCCCTTAAACCCACACACCAAACCCTCCTTGACAGTAAATTTCTCCCATTTCAAGAAGCTCAGGAAGTCTTTGGTTTGTTTCTCTCATAGGCCTAGTTCCAATTCAAATCCCAGAAACCCAAGATGGCCAAAGCCCTTGTCTTTTCGCAAGTTTCCCTTAAACCCTATCTGGGTTTTGGTCCCGGTCCTCCAGAGCATCAGGGTTTTAGCTTCTTCAAGGACCCAGAAGTGGGCTTCTTTTGTACAGGCTTATACAGACTCAGGGAGGCTTGTACATGAAAAAAGCAACGATTTTTTGCACAACAGTGGGATTGGGTTGGCTTTGTTAAGCGTGACCACAGATGCCAAGGTGAAGATTAGTCCTTTCGTGGCTCAATTGGCTGCGAATCCGACCTTTGTTTCGGGGATGTTTGCTTGGTTTATGGCACAGTCGATCAAAGTGGTGTTGAATTTCTTTGTGGAGAGGAAGTGGGATTTGAGGATATTGTATGCTTCTGGAGGCATGCCTTCGTCTCATTCGGCTTTGTGCACTGCTTTGACGACCTCTGTGGCGCTTTGTCATGGTGTTGCGGACTCATTGTTTCCGGTTTGTTTGGGGTTTAGCCTCATTGTTATGTATGATGCTATTGGGGTTAGGAGACATGCTGGTATGCAAGCTGAGGTAAGAAGCAATTTTCTGTCTTTATTTGCGTTCTGCTTTATCTGTTTGGTTTTGGTGTTGCTGATGTTCATAACGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

263

Amino Acids

29.33

Weight (kDa)

10.14

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 145 - 238 2.8e-35 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61770
fragaria_vesca FvH4_7g16450 FvH4_7g16450
malus_domestica MD01G1080900.v1.1
prunus_persica Prupe.2G188600_v2.0.a1 Prupe.2G188600_v2.0.a1
pyrus_communis pycom01g10890
rosa_chinensis RchiOBHm_Chr1g0359491
rosa_laevigata RLG00000027865
rosa_multiflora Rmu_sc0002556.1_g000008
rosa_roxburghii Rroxscaffold_4G00296960
rosa_rugosa Rorug01G0271600 Rorug01G0271700
rosa_samantha Rh1AG285100 Rh1BG251200 Rh1CG269000 Rh1DG280300
rosa_wichuraiana Rw1G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 620
AclI AACGTT 1 cut(s) 785
AcoI YGGCCR 1 cut(s) 176
AcsI RAATTY 2 cut(s) 88, 499
AfaI GTAC 2 cut(s) 294, 324
AfiI CCNNNNNNNGG 3 cut(s) 220, 279, 280
AgsI TTSAA 4 cut(s) 103, 156, 267, 499
AleI CACNNNNGTG 1 cut(s) 354
AluBI AGCT 4 cut(s) 36, 109, 260, 707
AluI AGCT 4 cut(s) 36, 109, 260, 707
Alw21I GWGCWC 1 cut(s) 581
Alw26I GTCTC 2 cut(s) 567, 682
Alw44I GTGCAC 1 cut(s) 577
AoxI GGCC 2 cut(s) 140, 176
ApaLI GTGCAC 1 cut(s) 577
ApeKI GCWGC 1 cut(s) 431
ApoI RAATTY 2 cut(s) 88, 499
ArsI GACNNNNNNTTYG 4 cut(s) 173, 205, 433, 465
AspLEI GCGC 1 cut(s) 604
AspS9I GGNCC 3 cut(s) 229, 235, 270
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 412
AvaII GGWCC 3 cut(s) 229, 235, 270
BaeGI GKGCMC 1 cut(s) 581
BalI TGGCCA 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 581
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 1 cut(s) 418
BccI CCATC 2 cut(s) 17, 168
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 567, 682
BfaI CTAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 605
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 3 cut(s) 229, 235, 270
BmgT120I GGNCC 3 cut(s) 229, 235, 270
BmiI GGNNCC 2 cut(s) 231, 272
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 3 cut(s) 255, 382, 661
BpmI CTGGAG 2 cut(s) 224, 567
Bpu10I CCTNAGC 2 cut(s) 110, 708
BpuMI CCSGG 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 634
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 279, 280
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 1 cut(s) 462
BseLI CCNNNNNNNGG 3 cut(s) 220, 279, 280
BseMII CTCAG 4 cut(s) 61, 124, 324, 699
BseSI GKGCMC 1 cut(s) 581
BseXI GCAGC 1 cut(s) 418
BshFI GGCC 2 cut(s) 142, 178
BsiHKAI GWGCWC 1 cut(s) 581
BsiSI CCGG 2 cut(s) 233, 635
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 3 cut(s) 220, 279, 280
BsmAI GTCTC 2 cut(s) 567, 682
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 2 cut(s) 142, 178
Bsp1286I GDGCHC 1 cut(s) 581
Bsp1407I TGTACA 2 cut(s) 292, 322
Bsp143I GATC 1 cut(s) 483
BspACI CCGC 1 cut(s) 620
BspANI GGCC 2 cut(s) 142, 178
BspCNI CTCAG 4 cut(s) 60, 123, 323, 700
BspLI GGNNCC 2 cut(s) 231, 272
BsrGI TGTACA 2 cut(s) 292, 322
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 3 cut(s) 85, 356, 480
BstAUI TGTACA 2 cut(s) 292, 322
BstC8I GCNNGC 2 cut(s) 554, 705
BstDEI CTNAG 4 cut(s) 47, 110, 310, 708
BstF5I GGATG 1 cut(s) 462
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 1 cut(s) 604
BstKTI GATC 1 cut(s) 486
BstMAI GTCTC 2 cut(s) 567, 682
BstMBI GATC 1 cut(s) 483
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNSI RCATGY 2 cut(s) 556, 695
BstSCI CCNGG 1 cut(s) 231
BstSLI GKGCMC 1 cut(s) 581
BstV1I GCAGC 1 cut(s) 418
BsuRI GGCC 2 cut(s) 142, 178
BtsCI GGATG 1 cut(s) 462
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 2 cut(s) 361, 579
Cac8I GCNNGC 2 cut(s) 554, 705
CfoI GCGC 1 cut(s) 604
Cfr13I GGNCC 3 cut(s) 229, 235, 270
Csp6I GTAC 2 cut(s) 293, 323
CviAII CATG 4 cut(s) 326, 553, 611, 692
CviQI GTAC 2 cut(s) 293, 323
DdeI CTNAG 4 cut(s) 47, 110, 310, 708
DpnI GATC 1 cut(s) 485
DpnII GATC 1 cut(s) 483
EaeI YGGCCR 1 cut(s) 176
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 142
Eco47I GGWCC 3 cut(s) 229, 235, 270
EcoO109I RGGNCCY 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 4 cut(s) 329, 556, 614, 695
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 1 cut(s) 215
FatI CATG 4 cut(s) 325, 552, 610, 691
Fnu4HI GCNGC 1 cut(s) 432
FokI GGATG 1 cut(s) 469
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 603
GluI GCNGC 1 cut(s) 432
GsuI CTGGAG 2 cut(s) 224, 567
HaeII RGCGCY 1 cut(s) 605
HaeIII GGCC 2 cut(s) 142, 178
HapII CCGG 2 cut(s) 233, 635
HhaI GCGC 1 cut(s) 604
Hin1II CATG 4 cut(s) 329, 556, 614, 695
Hin6I GCGC 1 cut(s) 602
HinP1I GCGC 1 cut(s) 602
HinfI GANTC 4 cut(s) 5, 308, 436, 623
HpaII CCGG 2 cut(s) 233, 635
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 4 cut(s) 103, 112, 241, 546
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 2 cut(s) 49, 567
HpyCH4III ACNGT 3 cut(s) 85, 356, 480
HpyCH4IV ACGT 1 cut(s) 785
HpyCH4V TGCA 3 cut(s) 349, 579, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 4 cut(s) 47, 110, 310, 708
HpySE526I ACGT 1 cut(s) 785
Hsp92II CATG 4 cut(s) 329, 556, 614, 695
HspAI GCGC 1 cut(s) 602
Kzo9I GATC 1 cut(s) 483
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 1 cut(s) 418
LweI GCATC 3 cut(s) 255, 382, 661
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 785
MaeIII GTNAC 1 cut(s) 382
MalI GATC 1 cut(s) 485
MboI GATC 1 cut(s) 483
MboII GAAGA 2 cut(s) 255, 415
MfeI CAATTG 1 cut(s) 425
MhlI GDGCHC 1 cut(s) 581
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 5 cut(s) 88, 151, 425, 499, 721
MluNI TGGCCA 1 cut(s) 178
MlyI GAGTC 2 cut(s) 302, 617
MmeI TCCRAC 1 cut(s) 464
MnlI CCTC 9 cut(s) 85, 248, 309, 507, 522, 542, 604, 665, 703
Mox20I TGGCCA 1 cut(s) 178
MscI TGGCCA 1 cut(s) 178
MseI TTAA 3 cut(s) 56, 209, 377
MslI CAYNNNNRTG 2 cut(s) 354, 662
Msp20I TGGCCA 1 cut(s) 178
MspI CCGG 2 cut(s) 233, 635
MspR9I CCNGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 425
MwoI GCNNNNNNNGC 1 cut(s) 428
NciI CCSGG 1 cut(s) 233
NdeII GATC 1 cut(s) 483
NlaIII CATG 4 cut(s) 329, 556, 614, 695
NlaIV GGNNCC 2 cut(s) 231, 272
NmuCI GTSAC 1 cut(s) 382
NspI RCATGY 2 cut(s) 556, 695
OliI CACNNNNGTG 1 cut(s) 354
PaeI GCATGC 1 cut(s) 556
PceI AGGCCT 1 cut(s) 142
PfeI GAWTC 1 cut(s) 436
PkrI GCNGC 1 cut(s) 433
PleI GAGTC 2 cut(s) 302, 617
PpsI GAGTC 2 cut(s) 302, 617
PpuMI RGGWCCY 1 cut(s) 270
Psp1406I AACGTT 1 cut(s) 785
Psp5II RGGWCCY 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 231, 272
PspPI GGNCC 3 cut(s) 229, 235, 270
PspPPI RGGWCCY 1 cut(s) 270
RsaI GTAC 2 cut(s) 294, 324
RsaNI GTAC 2 cut(s) 293, 323
RseI CAYNNNNRTG 2 cut(s) 354, 662
SaqAI TTAA 3 cut(s) 56, 209, 377
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 1 cut(s) 483
Sau96I GGNCC 3 cut(s) 229, 235, 270
SchI GAGTC 2 cut(s) 302, 617
ScrFI CCNGG 1 cut(s) 233
SduI GDGCHC 1 cut(s) 581
SetI ASST 9 cut(s) 38, 111, 262, 402, 446, 596, 709, 714, 788
SfaNI GCATC 3 cut(s) 255, 382, 661
SinI GGWCC 3 cut(s) 229, 235, 270
SmiMI CAYNNNNRTG 2 cut(s) 354, 662
SphI GCATGC 1 cut(s) 556
Sse9I AATT 5 cut(s) 88, 151, 425, 499, 721
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 1 cut(s) 620
SspMI CTAG 1 cut(s) 144
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 3 cut(s) 85, 356, 480
TaiI ACGT 1 cut(s) 788
TaqI TCGA 1 cut(s) 482
TasI AATT 5 cut(s) 88, 151, 425, 499, 721
TatI WGTACW 2 cut(s) 292, 322
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 3 cut(s) 56, 209, 377
Tru9I TTAA 3 cut(s) 56, 209, 377
TscAI CASTG 2 cut(s) 361, 586
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 3 cut(s) 31, 342, 769
TspRI CASTG 2 cut(s) 361, 586
VneI GTGCAC 1 cut(s) 577
VpaK11BI GGWCC 3 cut(s) 229, 235, 270
XapI RAATTY 2 cut(s) 88, 499
XceI RCATGY 2 cut(s) 556, 695
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.