Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013308

Physical Location & Seq

Genomic Coordinates Forward (+)

38406820 .. 38409591

Gene Structure 2772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0271600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCCACCGACATCAGCAATTCAACCCCTGTCTGCTTCTGCAAGAGACTTCGCCAGTGCGACCTAAACCCGACACGGCGGCATCGCGCAGCAGCAAGGATGAGTGGGCATGCTTCAGTCGATTCCCAGCGGGGGTCTGGAGGCCGTGACCGGATTGGGGGGCTGAAGTTGCGGCGGGCTTTGGCGTGCAGTTGTTACAGGTTCAAATCAAGGGATTGGATTTGGAACAGTTACGCTATTGGCTTCAGAAGGGTCAAGGTTGTGCTAACTGCTTTGGATGAGAAGAGAGGTCTTCAAGCTATTGAAAAGCTAAAAGACTATGGCTTCTCAGATCTTGTGGTTTATCATCAGCTCGATGTAACTGACCCTAATAGCATTGCTTTCCTTGCCGATTTTGTCAAAACCCAATTTGGGAAACTCGATATCTTGGTAAACAATGCAGGGATTGGTGGAACCTTTGTAGACCCTGAAGCTTTCAAAGCTGCTGCAGCTGCAGGCATGGATAAGGATGATGTAGTAGTCAACTTGAGTAAACTAATCACTCAAACATATGAGTTAGCTGAAGAATGTCTGCTATCTGATTCTCCAAGAGTTTCCAATATTACTTCTGGCGTGGGACAGTTAACGCATATACCAAATGAATGGGCCAGAGGGTTGTTGAGTGATGCTGAGAATCTTACAGAAGAGAGAGTGGATGAGGTTTTGAGGGAGTTTCTAAAAGACTTCAAAGAAGATATGCTGGAAACCAAAGGCTGGCCTACTTCTCTTTCTGCATATATACTCTCCAAAGAAGCCTTGAATGCATACACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF212

Protein Analysis

271

Amino Acids

30.15

Weight (kDa)

6.9

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	85 - 208	4.4e-12	short chain dehydrogenase
adh_short_C2	PF13561	86 - 154	6.6e-10	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013308)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61770
fragaria_vesca	FvH4_7g16450 FvH4_7g16450
malus_domestica	MD01G1080900.v1.1
prunus_persica	Prupe.2G188600_v2.0.a1 Prupe.2G188600_v2.0.a1
pyrus_communis	pycom01g10890
rosa_chinensis	RchiOBHm_Chr1g0359491
rosa_laevigata	RLG00000027865
rosa_multiflora	Rmu_sc0002556.1_g000008
rosa_roxburghii	Rroxscaffold_4G00296960
rosa_rugosa	Rorug01G0271600 Rorug01G0271700
rosa_samantha	Rh1AG285100 Rh1BG251200 Rh1CG269000 Rh1DG280300
rosa_wichuraiana	Rw1G025350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	753
AccI	GTMKAC	1 cut(s)	462
AccII	CGCG	1 cut(s)	87
AciI	CCGC	4 cut(s)	79, 130, 172, 175
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	5 cut(s)	99, 185, 229, 489, 582
AfiI	CCNNNNNNNGG	4 cut(s)	132, 157, 411, 753
AgsI	TTSAA	7 cut(s)	24, 205, 296, 305, 478, 727, 799
AluBI	AGCT	8 cut(s)	299, 310, 352, 473, 482, 491, 560, 813
AluI	AGCT	8 cut(s)	299, 310, 352, 473, 482, 491, 560, 813
Alw26I	GTCTC	1 cut(s)	40
AoxI	GGCC	4 cut(s)	3, 142, 645, 755
ApeKI	GCWGC	6 cut(s)	89, 92, 482, 485, 488, 491
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	645
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	6 cut(s)	101, 104, 469, 472, 478, 500
BceAI	ACGGC	2 cut(s)	92, 129
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	2 cut(s)	810, 814
BfmI	CTRYAG	2 cut(s)	486, 492
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	8 cut(s)	80, 90, 93, 173, 483, 486, 489, 492
BlsI	GCNGC	8 cut(s)	81, 91, 94, 174, 484, 487, 490, 493
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	1 cut(s)	454
BmsI	GCATC	2 cut(s)	91, 655
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	547
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	4 cut(s)	132, 157, 411, 753
Bse1I	ACTGG	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	375
BseGI	GGATG	4 cut(s)	105, 283, 514, 700
BseLI	CCNNNNNNNGG	4 cut(s)	132, 157, 411, 753
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	342, 660
BseNI	ACTGG	1 cut(s)	55
BseXI	GCAGC	6 cut(s)	101, 104, 469, 472, 478, 500
BseYI	CCCAGC	1 cut(s)	126
BsgI	GTGCAG	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	4 cut(s)	5, 144, 647, 757
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	4 cut(s)	132, 157, 411, 753
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	630
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	4 cut(s)	5, 144, 647, 757
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	4 cut(s)	79, 130, 172, 175
BspANI	GGCC	4 cut(s)	5, 144, 647, 757
BspCNI	CTCAG	2 cut(s)	341, 661
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	454
BspMAI	CTGCAG	2 cut(s)	490, 496
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	55
BssMI	GATC	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	230, 621
Bst6I	CTCTTC	2 cut(s)	278, 678
BstC8I	GCNNGC	5 cut(s)	111, 177, 187, 496, 755
BstDEI	CTNAG	2 cut(s)	328, 669
BstF5I	GGATG	4 cut(s)	105, 283, 514, 700
BstFNI	CGCG	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	6 cut(s)	169, 386, 479, 488, 491, 800
BstNSI	RCATGY	1 cut(s)	113
BstSFI	CTRYAG	2 cut(s)	486, 492
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	6 cut(s)	101, 104, 469, 472, 478, 500
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	4 cut(s)	5, 144, 647, 757
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	4 cut(s)	105, 283, 514, 700
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	5 cut(s)	111, 177, 187, 496, 755
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	645
CviAII	CATG	2 cut(s)	110, 499
DdeI	CTNAG	2 cut(s)	328, 669
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	278, 678
EarI	CTCTTC	2 cut(s)	278, 678
Eco32I	GATATC	1 cut(s)	424
Eco57I	CTGAAG	5 cut(s)	99, 185, 229, 489, 582
EcoRV	GATATC	1 cut(s)	424
EcoT22I	ATGCAT	1 cut(s)	805
FaeI	CATG	2 cut(s)	113, 502
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	2 cut(s)	109, 498
FauI	CCCGC	2 cut(s)	123, 168
FauNDI	CATATG	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	462
Fnu4HI	GCNGC	8 cut(s)	80, 90, 93, 173, 483, 486, 489, 492
FokI	GGATG	4 cut(s)	112, 290, 521, 707
Fsp4HI	GCNGC	8 cut(s)	80, 90, 93, 173, 483, 486, 489, 492
FspBI	CTAG	2 cut(s)	810, 814
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	8 cut(s)	80, 90, 93, 173, 483, 486, 489, 492
GsaI	CCCAGC	1 cut(s)	130
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	4 cut(s)	5, 144, 647, 757
HapII	CCGG	1 cut(s)	151
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	113, 502
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	2 cut(s)	523, 624
HindII	GTYRAC	2 cut(s)	523, 624
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	3 cut(s)	122, 581, 673
HpaI	GTTAAC	1 cut(s)	624
HpaII	CCGG	1 cut(s)	151
Hpy166II	GTNNAC	5 cut(s)	433, 463, 523, 533, 624
Hpy188I	TCNGA	3 cut(s)	248, 331, 580
Hpy188III	TCNNGA	1 cut(s)	138
Hpy8I	GTNNAC	5 cut(s)	433, 463, 523, 533, 624
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	230, 621
HpyCH4V	TGCA	7 cut(s)	42, 189, 440, 488, 494, 773, 803
HpyF10VI	GCNNNNNNNGC	6 cut(s)	169, 386, 479, 488, 491, 800
HpyF3I	CTNAG	2 cut(s)	328, 669
Hsp92II	CATG	2 cut(s)	113, 502
HspAI	GCGC	1 cut(s)	87
KspAI	GTTAAC	1 cut(s)	624
Kzo9I	GATC	1 cut(s)	331
Lsp1109I	GCAGC	6 cut(s)	101, 104, 469, 472, 478, 500
LweI	GCATC	2 cut(s)	91, 655
MaeI	CTAG	2 cut(s)	810, 814
MaeIII	GTNAC	4 cut(s)	146, 194, 230, 358
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	5 cut(s)	284, 295, 575, 695, 743
MflI	RGATCY	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	19, 407
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	5 cut(s)	134, 281, 644, 691, 699
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	805
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	623
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	130, 491
MspI	CCGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	805
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	6 cut(s)	169, 386, 479, 488, 491, 800
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	2 cut(s)	113, 502
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	146
NsiI	ATGCAT	1 cut(s)	805
NspI	RCATGY	1 cut(s)	113
PaeI	GCATGC	1 cut(s)	113
PctI	GAATGC	1 cut(s)	805
PfeI	GAWTC	3 cut(s)	122, 581, 673
PflMI	CCANNNNNTGG	1 cut(s)	753
PkrI	GCNGC	8 cut(s)	81, 91, 94, 174, 484, 487, 490, 493
PspFI	CCCAGC	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	645
PstI	CTGCAG	2 cut(s)	490, 496
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	623
SatI	GCNGC	8 cut(s)	80, 90, 93, 173, 483, 486, 489, 492
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	645
SfaNI	GCATC	2 cut(s)	91, 655
SfcI	CTRYAG	2 cut(s)	486, 492
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	2 cut(s)	19, 407
SsiI	CCGC	4 cut(s)	79, 130, 172, 175
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	2 cut(s)	810, 814
TaaI	ACNGT	2 cut(s)	230, 621
TaqI	TCGA	3 cut(s)	120, 354, 420
TasI	AATT	2 cut(s)	19, 407
TauI	GCSGC	2 cut(s)	82, 175
TfiI	GAWTC	3 cut(s)	122, 581, 673
Tru1I	TTAA	1 cut(s)	623
Tru9I	TTAA	1 cut(s)	623
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	6 cut(s)	89, 92, 482, 485, 488, 491
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	654
TspRI	CASTG	1 cut(s)	62
Van91I	CCANNNNNTGG	1 cut(s)	753
XceI	RCATGY	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	462
XspI	CTAG	2 cut(s)	810, 814
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.