FvH4_7g16450

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013308
Physical Location & Seq
Forward (+)
14092530 .. 14096207
3678 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16450.t1

Sequence Viewer

Length: 669 bp
ATGGACTCTATCATAACCAACCACCCATTCACCTCCTTCATTCCCAGCCCCTTAAACCCGCACCCAAAACCCTTCACAGCAACTTCATCCCATCTCAAGAAGCTTAAGAAGTCTTTTGTTTGTTTCTCTCAACGGCCTAGGTCGAATTCCAGAAACCCAAGATGGCCAGAGCCCTTGTCTTTCCGCAAGTTAAACCCTATCTGGGTTTTGGTCCCGGTGCTCCAGAGCATCAGGGTTTTAGCTTCTTCTGGGAAATGGGTTTCTGAGCATCATGGTTTTGGGTTTTTACAGAACAGTGGGATTGGGATAGCGTTGATGAGTGTGACAACGAATGCCAAGGTGAAGATTAGTCCTTTTGTGACTCAACTGGCTGCGAACCCGACCTTTGTTTCGGGCATGTTTGCTTGGTTTGTGGCGCAGTCGATGAAAGTGGTGTTGAATTTCTTTGTGGAGAAGAAGTGGGATTTGAGGATATTGTGTGCTTCTGGAGGCATGCCTTCGTCTCATTCGGCTTTGTGCACTGCTTTGACTACCTCTGTGGCGCTTTGTCATGGTGTTGCGGACTCGTTGTTTCCGGTTTGTTTGGGGTTTAGTCTCATTGTTATGTATGATGCTACTGGGGTGAGGAGACATGCTGGTATGCAAGCTGAGAGTTACAGAGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

223

Amino Acids

24.51

Weight (kDa)

10.09

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 125 - 218 2.8e-35 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61770
fragaria_vesca FvH4_7g16450 FvH4_7g16450
malus_domestica MD01G1080900.v1.1
prunus_persica Prupe.2G188600_v2.0.a1 Prupe.2G188600_v2.0.a1
pyrus_communis pycom01g10890
rosa_chinensis RchiOBHm_Chr1g0359491
rosa_laevigata RLG00000027865
rosa_multiflora Rmu_sc0002556.1_g000008
rosa_roxburghii Rroxscaffold_4G00296960
rosa_rugosa Rorug01G0271600 Rorug01G0271700
rosa_samantha Rh1AG285100 Rh1BG251200 Rh1CG269000 Rh1DG280300
rosa_wichuraiana Rw1G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 59, 184, 560
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 2 cut(s) 145, 439
AfiI CCNNNNNNNGG 1 cut(s) 202
AflII CTTAAG 1 cut(s) 104
AgsI TTSAA 1 cut(s) 439
AjuI GAANNNNNNNTTGG 2 cut(s) 11, 43
AluBI AGCT 3 cut(s) 103, 242, 647
AluI AGCT 3 cut(s) 103, 242, 647
Alw21I GWGCWC 2 cut(s) 222, 521
Alw26I GTCTC 3 cut(s) 507, 599, 622
Alw44I GTGCAC 1 cut(s) 517
AoxI GGCC 2 cut(s) 134, 164
ApaLI GTGCAC 1 cut(s) 517
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 2 cut(s) 145, 439
ArsI GACNNNNNNTTYG 2 cut(s) 373, 405
AspA2I CCTAGG 1 cut(s) 137
AspLEI GCGC 2 cut(s) 418, 544
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 3 cut(s) 22, 352, 634
AvaII GGWCC 1 cut(s) 211
AvrII CCTAGG 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 521
BalI TGGCCA 1 cut(s) 166
BanII GRGCYC 1 cut(s) 174
Bbv12I GWGCWC 2 cut(s) 222, 521
BbvI GCAGC 1 cut(s) 358
BccI CCATC 2 cut(s) 99, 156
BceAI ACGGC 1 cut(s) 149
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 3 cut(s) 507, 599, 622
BfaI CTAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 545
BfrI CTTAAG 1 cut(s) 104
BisI GCNGC 1 cut(s) 372
BlnI CCTAGG 1 cut(s) 137
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 627
BmsI GCATC 3 cut(s) 237, 277, 601
BmuI ACTGGG 1 cut(s) 627
BpmI CTGGAG 2 cut(s) 206, 507
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 137, 336
BsaWI WCCGGW 1 cut(s) 574
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse1I ACTGG 2 cut(s) 372, 622
BseDI CCNNGG 2 cut(s) 137, 336
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 255, 639
BseNI ACTGG 2 cut(s) 372, 622
BseRI GAGGAG 1 cut(s) 640
BseSI GKGCMC 1 cut(s) 521
BseXI GCAGC 1 cut(s) 358
BseYI CCCAGC 1 cut(s) 44
BshFI GGCC 2 cut(s) 136, 166
BsiHKAI GWGCWC 2 cut(s) 222, 521
BsiSI CCGG 2 cut(s) 215, 575
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 3 cut(s) 507, 599, 622
BsmBI CGTCTC 1 cut(s) 507
BsmFI GGGAC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 2 cut(s) 136, 166
Bsp1286I GDGCHC 3 cut(s) 174, 222, 521
BspACI CCGC 3 cut(s) 59, 184, 560
BspANI GGCC 2 cut(s) 136, 166
BspCNI CTCAG 2 cut(s) 256, 640
BspLI GGNNCC 1 cut(s) 213
BspTI CTTAAG 1 cut(s) 104
BsrI ACTGG 2 cut(s) 372, 622
BssECI CCNNGG 2 cut(s) 137, 336
BssT1I CCWWGG 2 cut(s) 137, 336
Bst4CI ACNGT 1 cut(s) 296
BstAFI CTTAAG 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 494, 645
BstDEI CTNAG 2 cut(s) 264, 648
BstF5I GGATG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 545
BstHHI GCGC 2 cut(s) 418, 544
BstMAI GTCTC 3 cut(s) 507, 599, 622
BstNSI RCATGY 3 cut(s) 400, 496, 635
BstSCI CCNGG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 521
BstV1I GCAGC 1 cut(s) 358
BsuRI GGCC 2 cut(s) 136, 166
BtsCI GGATG 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 2 cut(s) 301, 519
Cac8I GCNNGC 2 cut(s) 494, 645
CfoI GCGC 2 cut(s) 418, 544
Cfr13I GGNCC 1 cut(s) 211
CviAII CATG 5 cut(s) 272, 397, 493, 551, 632
CviJI RGCY 9 cut(s) 48, 103, 136, 166, 172, 242, 371, 512, 647
CviKI_1 RGCY 9 cut(s) 48, 103, 136, 166, 172, 242, 371, 512, 647
DdeI CTNAG 2 cut(s) 264, 648
EaeI YGGCCR 1 cut(s) 164
Eco130I CCWWGG 2 cut(s) 137, 336
Eco24I GRGCYC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 211
EcoRI GAATTC 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 137, 336
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 2 cut(s) 137, 336
Esp3I CGTCTC 1 cut(s) 507
FaeI CATG 5 cut(s) 275, 400, 496, 554, 635
FaiI YATR 9 cut(s) 14, 273, 398, 494, 552, 605, 609, 633, 641
FaqI GGGAC 1 cut(s) 197
FatI CATG 5 cut(s) 271, 396, 492, 550, 631
FauI CCCGC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 138
GlaI GCGC 2 cut(s) 417, 543
GluI GCNGC 1 cut(s) 372
GsaI CCCAGC 1 cut(s) 48
GsuI CTGGAG 2 cut(s) 206, 507
HaeII RGCGCY 1 cut(s) 545
HaeIII GGCC 2 cut(s) 136, 166
HapII CCGG 2 cut(s) 215, 575
HhaI GCGC 2 cut(s) 418, 544
Hin1II CATG 5 cut(s) 275, 400, 496, 554, 635
Hin6I GCGC 2 cut(s) 416, 542
HinP1I GCGC 2 cut(s) 416, 542
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 3 cut(s) 5, 361, 563
HpaII CCGG 2 cut(s) 215, 575
HphI GGTGA 3 cut(s) 22, 352, 634
Hpy166II GTNNAC 1 cut(s) 519
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 4 cut(s) 97, 150, 223, 486
Hpy8I GTNNAC 1 cut(s) 519
HpyAV CCTTC 3 cut(s) 46, 82, 507
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 519, 643
HpyF3I CTNAG 2 cut(s) 264, 648
Hsp92II CATG 5 cut(s) 275, 400, 496, 554, 635
HspAI GCGC 2 cut(s) 416, 542
LmnI GCTCC 1 cut(s) 225
Lsp1109I GCAGC 1 cut(s) 358
LweI GCATC 3 cut(s) 237, 277, 601
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 3 cut(s) 322, 358, 653
MboII GAAGA 3 cut(s) 237, 355, 466
MhlI GDGCHC 3 cut(s) 174, 222, 521
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 2 cut(s) 145, 439
MluNI TGGCCA 1 cut(s) 166
MlyI GAGTC 2 cut(s) 355, 557
MnlI CCTC 5 cut(s) 43, 462, 482, 544, 618
Mox20I TGGCCA 1 cut(s) 166
MscI TGGCCA 1 cut(s) 166
MseI TTAA 3 cut(s) 53, 105, 191
MslI CAYNNNNRTG 1 cut(s) 602
Msp20I TGGCCA 1 cut(s) 166
MspCI CTTAAG 1 cut(s) 104
MspI CCGG 2 cut(s) 215, 575
MspR9I CCNGG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 337
NciI CCSGG 1 cut(s) 215
NlaIII CATG 5 cut(s) 275, 400, 496, 554, 635
NlaIV GGNNCC 1 cut(s) 213
NmuCI GTSAC 2 cut(s) 322, 358
NspI RCATGY 3 cut(s) 400, 496, 635
PaeI GCATGC 1 cut(s) 496
PctI GAATGC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 2 cut(s) 355, 557
PpsI GAGTC 2 cut(s) 355, 557
PspFI CCCAGC 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 213
PspPI GGNCC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 602
SaqAI TTAA 3 cut(s) 53, 105, 191
SatI GCNGC 1 cut(s) 372
Sau96I GGNCC 1 cut(s) 211
SchI GAGTC 2 cut(s) 355, 557
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 3 cut(s) 174, 222, 521
SetI ASST 8 cut(s) 35, 105, 143, 244, 342, 386, 536, 649
SfaNI GCATC 3 cut(s) 237, 277, 601
SinI GGWCC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 602
SmlI CTYRAG 2 cut(s) 95, 104
SmoI CTYRAG 2 cut(s) 95, 104
SphI GCATGC 1 cut(s) 496
Sse9I AATT 2 cut(s) 145, 439
SsiI CCGC 3 cut(s) 59, 184, 560
SspMI CTAG 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 2 cut(s) 137, 336
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 143, 422
TasI AATT 2 cut(s) 145, 439
Tru1I TTAA 3 cut(s) 53, 105, 191
Tru9I TTAA 3 cut(s) 53, 105, 191
TscAI CASTG 2 cut(s) 301, 526
TseFI GTSAC 2 cut(s) 322, 358
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 2 cut(s) 322, 358
TspDTI ATGAA 3 cut(s) 28, 75, 440
TspRI CASTG 2 cut(s) 301, 526
Vha464I CTTAAG 1 cut(s) 104
VneI GTGCAC 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 2 cut(s) 145, 439
XceI RCATGY 3 cut(s) 400, 496, 635
XmaJI CCTAGG 1 cut(s) 137
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.