Rmu_sc0002556.1_g000008

Divergent PAP2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002556.1
OG0013308
Physical Location & Seq
Forward (+)
39553 .. 42013
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002556.1_g000008.1.cds

Sequence Viewer

Length: 873 bp
atggactccatcacaacaacaaagcacccattcagctccttcattctcagccccttaaacccacacaccaaaccctccttcacagcaaatttgtcccatttcaagaagctcaggaagtctttggtttgtttctctcataggcctagttccaattcaaatcccagaaacccaagatggccaaagcccttgtcttttcacaagtttcccttaaaccctatctgggttttggtcccggtcctccagagcatcagggttttagcttcttcaaggacccagaagtgggcttcttttgtacaggcttatacagactcagggaggcttgtacatgaaaaaagcaacgattttttgcacaacagtgggattgggttagctttgttaagcgtgaccacagatgccaaggtgaagattagtcctttcgtggctcaattggctgcaaatccgacctttgtttcggggatgtttgcttggtttatggcacagtcgatcaaagtggtgttgaatttctttgtggagaggaagtgggatttgaggatattgtatgcttctggaggcatgccttcgtctcattcggctttgtgtactgctttgacgacatccgtggcgctttgtcatggtgttgcggactcattgtttccagtttgtttggggtttagcctcattgttatgtatgatgccattggggttaggagacatgctggtatgcaagctgaggtgctgaatgtagtcgtagagtacttattccaagggcatccaatcagccaaaagaagctcaaggaactccttggtcacaccccctcccaggttcttgctggagctgtcctcggcattgtggtcgcatgtgtttgttgccagggtagcttggttgctgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

290

Amino Acids

31.73

Weight (kDa)

9.81

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013308)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G61770
fragaria_vesca FvH4_7g16450 FvH4_7g16450
malus_domestica MD01G1080900.v1.1
prunus_persica Prupe.2G188600_v2.0.a1 Prupe.2G188600_v2.0.a1
pyrus_communis pycom01g10890
rosa_chinensis RchiOBHm_Chr1g0359491
rosa_laevigata RLG00000027865
rosa_multiflora Rmu_sc0002556.1_g000008
rosa_roxburghii Rroxscaffold_4G00296960
rosa_rugosa Rorug01G0271600 Rorug01G0271700
rosa_samantha Rh1AG285100 Rh1BG251200 Rh1CG269000 Rh1DG280300
rosa_wichuraiana Rw1G025350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 620
AcoI YGGCCR 1 cut(s) 176
AcsI RAATTY 2 cut(s) 88, 499
AfaI GTAC 4 cut(s) 294, 324, 580, 734
AfiI CCNNNNNNNGG 4 cut(s) 220, 279, 280, 799
AgsI TTSAA 4 cut(s) 103, 156, 267, 499
AjnI CCWGG 2 cut(s) 798, 849
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AleI CACNNNNGTG 1 cut(s) 354
AluBI AGCT 8 cut(s) 36, 109, 260, 371, 707, 769, 815, 858
AluI AGCT 8 cut(s) 36, 109, 260, 371, 707, 769, 815, 858
Alw26I GTCTC 2 cut(s) 567, 682
AoxI GGCC 2 cut(s) 140, 176
ApeKI GCWGC 2 cut(s) 431, 866
ApoI RAATTY 2 cut(s) 88, 499
ArsI GACNNNNNNTTYG 4 cut(s) 173, 205, 433, 465
AspLEI GCGC 1 cut(s) 604
AspS9I GGNCC 3 cut(s) 229, 235, 270
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 412
AvaII GGWCC 3 cut(s) 229, 235, 270
BalI TGGCCA 1 cut(s) 178
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 2 cut(s) 418, 853
BccI CCATC 2 cut(s) 17, 168
BcgI CGANNNNNNTGC 2 cut(s) 814, 848
BciT130I CCWGG 2 cut(s) 800, 851
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 567, 682
BfaI CTAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 605
BisI GCNGC 2 cut(s) 432, 867
BlsI GCNGC 2 cut(s) 433, 868
BmcAI AGTACT 1 cut(s) 734
Bme1390I CCNGG 3 cut(s) 233, 800, 851
Bme18I GGWCC 3 cut(s) 229, 235, 270
BmgT120I GGNCC 3 cut(s) 229, 235, 270
BmiI GGNNCC 2 cut(s) 231, 272
BmrFI CCNGG 3 cut(s) 233, 800, 851
BmsI GCATC 4 cut(s) 255, 382, 661, 757
BplI GAGNNNNNCTC 2 cut(s) 804, 836
BpmI CTGGAG 3 cut(s) 224, 567, 831
Bpu10I CCTNAGC 2 cut(s) 110, 708
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 1 cut(s) 233
BsaJI CCNNGG 7 cut(s) 396, 597, 742, 781, 798, 820, 850
BsaXI ACNNNNNCTCC 4 cut(s) 503, 533, 779, 809
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 279, 280, 799
Bse1I ACTGG 1 cut(s) 635
BseBI CCWGG 2 cut(s) 800, 851
BseDI CCNNGG 7 cut(s) 396, 597, 742, 781, 798, 820, 850
BseGI GGATG 3 cut(s) 462, 593, 748
BseLI CCNNNNNNNGG 4 cut(s) 220, 279, 280, 799
BseMII CTCAG 4 cut(s) 61, 124, 324, 699
BseNI ACTGG 1 cut(s) 635
BseXI GCAGC 2 cut(s) 418, 853
BshFI GGCC 2 cut(s) 142, 178
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 2 cut(s) 79, 215
BslI CCNNNNNNNGG 4 cut(s) 220, 279, 280, 799
BsmAI GTCTC 2 cut(s) 567, 682
BsmBI CGTCTC 1 cut(s) 567
BsmFI GGGAC 2 cut(s) 79, 215
BsnI GGCC 2 cut(s) 142, 178
Bsp1407I TGTACA 2 cut(s) 292, 322
Bsp143I GATC 1 cut(s) 483
BspACI CCGC 1 cut(s) 620
BspANI GGCC 2 cut(s) 142, 178
BspCNI CTCAG 4 cut(s) 60, 123, 323, 700
BspLI GGNNCC 2 cut(s) 231, 272
BsrGI TGTACA 2 cut(s) 292, 322
BsrI ACTGG 1 cut(s) 635
BssECI CCNNGG 7 cut(s) 396, 597, 742, 781, 798, 820, 850
BssMI GATC 1 cut(s) 483
BssT1I CCWWGG 3 cut(s) 396, 742, 781
Bst2UI CCWGG 2 cut(s) 800, 851
Bst4CI ACNGT 2 cut(s) 356, 480
BstAUI TGTACA 2 cut(s) 292, 322
BstC8I GCNNGC 2 cut(s) 554, 705
BstDEI CTNAG 4 cut(s) 47, 110, 310, 708
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 3 cut(s) 462, 593, 748
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 1 cut(s) 604
BstKTI GATC 1 cut(s) 486
BstMAI GTCTC 2 cut(s) 567, 682
BstMBI GATC 1 cut(s) 483
BstMWI GCNNNNNNNGC 2 cut(s) 428, 855
BstNI CCWGG 2 cut(s) 800, 851
BstNSI RCATGY 3 cut(s) 556, 695, 840
BstSCI CCNGG 3 cut(s) 231, 798, 849
BstV1I GCAGC 2 cut(s) 418, 853
BsuRI GGCC 2 cut(s) 142, 178
BtgI CCRYGG 1 cut(s) 597
BtsCI GGATG 3 cut(s) 462, 593, 748
BtsIMutI CAGTG 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 554, 705
CfoI GCGC 1 cut(s) 604
Cfr13I GGNCC 3 cut(s) 229, 235, 270
Csp6I GTAC 4 cut(s) 293, 323, 579, 733
CviAII CATG 5 cut(s) 326, 553, 611, 692, 837
CviQI GTAC 4 cut(s) 293, 323, 579, 733
DdeI CTNAG 4 cut(s) 47, 110, 310, 708
DpnI GATC 1 cut(s) 485
DpnII GATC 1 cut(s) 483
EaeI YGGCCR 1 cut(s) 176
Eco130I CCWWGG 3 cut(s) 396, 742, 781
Eco147I AGGCCT 1 cut(s) 142
Eco47I GGWCC 3 cut(s) 229, 235, 270
EcoO109I RGGNCCY 1 cut(s) 270
EcoRII CCWGG 2 cut(s) 798, 849
EcoT14I CCWWGG 3 cut(s) 396, 742, 781
ErhI CCWWGG 3 cut(s) 396, 742, 781
Esp3I CGTCTC 1 cut(s) 567
FaeI CATG 5 cut(s) 329, 556, 614, 695, 840
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 2 cut(s) 79, 215
FatI CATG 5 cut(s) 325, 552, 610, 691, 836
Fnu4HI GCNGC 2 cut(s) 432, 867
FokI GGATG 3 cut(s) 469, 580, 735
Fsp4HI GCNGC 2 cut(s) 432, 867
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 603
GluI GCNGC 2 cut(s) 432, 867
GsuI CTGGAG 3 cut(s) 224, 567, 831
HaeII RGCGCY 1 cut(s) 605
HaeIII GGCC 2 cut(s) 142, 178
HapII CCGG 1 cut(s) 233
HhaI GCGC 1 cut(s) 604
Hin1II CATG 5 cut(s) 329, 556, 614, 695, 840
Hin6I GCGC 1 cut(s) 602
HinP1I GCGC 1 cut(s) 602
HinfI GANTC 3 cut(s) 5, 308, 623
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 4 cut(s) 103, 112, 241, 546
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 3 cut(s) 49, 88, 567
HpyCH4III ACNGT 2 cut(s) 356, 480
HpyCH4V TGCA 3 cut(s) 349, 434, 703
HpyF10VI GCNNNNNNNGC 2 cut(s) 428, 855
HpyF3I CTNAG 4 cut(s) 47, 110, 310, 708
Hsp92II CATG 5 cut(s) 329, 556, 614, 695, 840
HspAI GCGC 1 cut(s) 602
Kzo9I GATC 1 cut(s) 483
LmnI GCTCC 2 cut(s) 41, 812
Lsp1109I GCAGC 2 cut(s) 418, 853
LweI GCATC 4 cut(s) 255, 382, 661, 757
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 382, 785
MalI GATC 1 cut(s) 485
MboI GATC 1 cut(s) 483
MboII GAAGA 2 cut(s) 255, 415
MfeI CAATTG 1 cut(s) 425
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 4 cut(s) 88, 151, 425, 499
MluNI TGGCCA 1 cut(s) 178
MlyI GAGTC 2 cut(s) 302, 617
MmeI TCCRAC 1 cut(s) 464
Mox20I TGGCCA 1 cut(s) 178
MscI TGGCCA 1 cut(s) 178
MseI TTAA 3 cut(s) 56, 209, 377
MslI CAYNNNNRTG 2 cut(s) 354, 662
Msp20I TGGCCA 1 cut(s) 178
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 3 cut(s) 233, 800, 851
MunI CAATTG 1 cut(s) 425
MvaI CCWGG 2 cut(s) 800, 851
MwoI GCNNNNNNNGC 2 cut(s) 428, 855
NciI CCSGG 1 cut(s) 233
NdeII GATC 1 cut(s) 483
NlaIII CATG 5 cut(s) 329, 556, 614, 695, 840
NlaIV GGNNCC 2 cut(s) 231, 272
NmeAIII GCCGAG 1 cut(s) 801
NmuCI GTSAC 2 cut(s) 382, 785
NspI RCATGY 3 cut(s) 556, 695, 840
OliI CACNNNNGTG 1 cut(s) 354
PaeI GCATGC 1 cut(s) 556
PceI AGGCCT 1 cut(s) 142
PkrI GCNGC 2 cut(s) 433, 868
PleI GAGTC 2 cut(s) 302, 617
PpsI GAGTC 2 cut(s) 302, 617
PpuMI RGGWCCY 1 cut(s) 270
Psp5II RGGWCCY 1 cut(s) 270
Psp6I CCWGG 2 cut(s) 798, 849
PspGI CCWGG 2 cut(s) 798, 849
PspN4I GGNNCC 2 cut(s) 231, 272
PspPI GGNCC 3 cut(s) 229, 235, 270
PspPPI RGGWCCY 1 cut(s) 270
RsaI GTAC 4 cut(s) 294, 324, 580, 734
RsaNI GTAC 4 cut(s) 293, 323, 579, 733
RseI CAYNNNNRTG 2 cut(s) 354, 662
SaqAI TTAA 3 cut(s) 56, 209, 377
SatI GCNGC 2 cut(s) 432, 867
Sau3AI GATC 1 cut(s) 483
Sau96I GGNCC 3 cut(s) 229, 235, 270
ScaI AGTACT 1 cut(s) 734
SchI GAGTC 2 cut(s) 302, 617
ScrFI CCNGG 3 cut(s) 233, 800, 851
SfaNI GCATC 4 cut(s) 255, 382, 661, 757
SinI GGWCC 3 cut(s) 229, 235, 270
SmiMI CAYNNNNRTG 2 cut(s) 354, 662
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
SphI GCATGC 1 cut(s) 556
Sse9I AATT 4 cut(s) 88, 151, 425, 499
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 1 cut(s) 620
SspMI CTAG 1 cut(s) 144
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 3 cut(s) 231, 798, 849
StyI CCWWGG 3 cut(s) 396, 742, 781
TaaI ACNGT 2 cut(s) 356, 480
TaqI TCGA 1 cut(s) 482
TasI AATT 4 cut(s) 88, 151, 425, 499
TatI WGTACW 4 cut(s) 292, 322, 578, 732
Tru1I TTAA 3 cut(s) 56, 209, 377
Tru9I TTAA 3 cut(s) 56, 209, 377
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 2 cut(s) 382, 785
TseI GCWGC 2 cut(s) 431, 866
Tsp45I GTSAC 2 cut(s) 382, 785
TspDTI ATGAA 2 cut(s) 31, 342
TspGWI ACGGA 1 cut(s) 586
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 3 cut(s) 229, 235, 270
XapI RAATTY 2 cut(s) 88, 499
XceI RCATGY 3 cut(s) 556, 695, 840
XcmI CCANNNNNNNNNTGG 1 cut(s) 806
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.