AT3G61930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005121
Physical Location & Seq
Forward (+)
22935510 .. 22936253
744 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G61930.1

Sequence Viewer

Length: 330 bp
ATGGGGAATTTTCTTAGGAGAAGCTGCGCTGTGCACCCGGCTTCCGGCGACGGAGGAAGAGGAAGACACGTGGACGAGCCGCCGCAACAACGTCCAAGTAGTGTGCGGATTAAAGTGAGGATGAGAAGAGATCAACTCGAAGAGCTTTTGTACTTGGCGCGTCGTGGTGATCAATCGGACGACGGTGGTAAGATTGGTTTCTTGATTCTTAAAGAATGTATGGAAGGTCGCTTACCAGCGAGTGTTCTTGGCTCCGGTGGCGATGTTCGATCTCAACGGCGTGGAAGTTACATGGTGTATCGGAGATTGGGTTCCATCACCGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.19

Weight (kDa)

10.0

Isoelectric Point (pI)

85.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 160
AciI CCGC 3 cut(s) 80, 83, 106
AcsI RAATTY 1 cut(s) 7
AcvI CACGTG 1 cut(s) 70
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 67
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 2 cut(s) 24, 145
AluI AGCT 2 cut(s) 24, 145
Alw21I GWGCWC 1 cut(s) 36
Alw44I GTGCAC 1 cut(s) 32
ApaLI GTGCAC 1 cut(s) 32
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 7
AspLEI GCGC 2 cut(s) 29, 160
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 179, 310
BaeGI GKGCMC 1 cut(s) 36
BarI GAAGNNNNNNTAC 2 cut(s) 216, 248
BbrPI CACGTG 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 11
BccI CCATC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 293
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 1 cut(s) 38
BisI GCNGC 3 cut(s) 25, 80, 83
BlsI GCNGC 3 cut(s) 26, 81, 84
Bme1390I CCNGG 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 253, 313
BmrFI CCNGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 70
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpuMI CCSGG 1 cut(s) 38
BsaAI YACGTR 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 321
BsaWI WCCGGW 1 cut(s) 254
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 1 cut(s) 11
Bsh1236I CGCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 3 cut(s) 38, 45, 255
BslI CCNNNNNNNGG 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 3 cut(s) 130, 169, 269
BspACI CCGC 3 cut(s) 80, 83, 106
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 253, 313
BspQI GCTCTTC 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 3 cut(s) 130, 169, 269
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 3 cut(s) 52, 121, 135
BstBAI YACGTR 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 2 cut(s) 29, 160
BstKTI GATC 3 cut(s) 133, 172, 272
BstMBI GATC 3 cut(s) 130, 169, 269
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 36
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 70
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 126
CfoI GCGC 2 cut(s) 29, 160
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 151
CviAII CATG 1 cut(s) 292
CviJI RGCY 5 cut(s) 24, 41, 79, 145, 252
CviKI_1 RGCY 5 cut(s) 24, 41, 79, 145, 252
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 14
DpnI GATC 3 cut(s) 132, 171, 271
DpnII GATC 3 cut(s) 130, 169, 269
Eam1104I CTCTTC 3 cut(s) 52, 121, 135
EarI CTCTTC 3 cut(s) 52, 121, 135
Eco72I CACGTG 1 cut(s) 70
FaeI CATG 1 cut(s) 295
FaiI YATR 2 cut(s) 221, 293
FatI CATG 1 cut(s) 291
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 3 cut(s) 25, 80, 83
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 3 cut(s) 25, 80, 83
GlaI GCGC 2 cut(s) 28, 159
GluI GCNGC 3 cut(s) 25, 80, 83
HapII CCGG 3 cut(s) 38, 45, 255
HgaI GACGC 1 cut(s) 149
HhaI GCGC 2 cut(s) 29, 160
Hin1II CATG 1 cut(s) 295
Hin6I GCGC 2 cut(s) 27, 158
HinP1I GCGC 2 cut(s) 27, 158
HinfI GANTC 1 cut(s) 205
HpaII CCGG 3 cut(s) 38, 45, 255
HphI GGTGA 2 cut(s) 179, 310
Hpy166II GTNNAC 2 cut(s) 34, 73
Hpy188I TCNGA 2 cut(s) 178, 303
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 2 cut(s) 34, 73
Hpy99I CGWCG 3 cut(s) 53, 165, 185
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 2 cut(s) 69, 91
HpyCH4V TGCA 1 cut(s) 34
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 2 cut(s) 69, 91
Hsp92II CATG 1 cut(s) 295
HspAI GCGC 2 cut(s) 27, 158
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 3 cut(s) 130, 169, 269
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 4 cut(s) 51, 58, 249, 268
Lsp1109I GCAGC 1 cut(s) 11
MaeII ACGT 2 cut(s) 69, 91
MaeIII GTNAC 1 cut(s) 287
MalI GATC 3 cut(s) 132, 171, 271
MboI GATC 3 cut(s) 130, 169, 269
MboII GAAGA 4 cut(s) 69, 75, 138, 152
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 1 cut(s) 7
MnlI CCTC 4 cut(s) 47, 53, 111, 316
MseI TTAA 2 cut(s) 111, 210
MspI CCGG 3 cut(s) 38, 45, 255
MspR9I CCNGG 1 cut(s) 38
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 258
NciI CCSGG 1 cut(s) 38
NdeII GATC 3 cut(s) 130, 169, 269
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 2 cut(s) 253, 313
PciSI GCTCTTC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 3 cut(s) 26, 81, 84
PmaCI CACGTG 1 cut(s) 70
PmlI CACGTG 1 cut(s) 70
Ppu21I YACGTR 1 cut(s) 70
PspCI CACGTG 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 253, 313
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 111, 210
SatI GCNGC 3 cut(s) 25, 80, 83
Sau3AI GATC 3 cut(s) 130, 169, 269
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 36
SetI ASST 5 cut(s) 26, 72, 94, 147, 229
Sse9I AATT 1 cut(s) 7
SsiI CCGC 3 cut(s) 80, 83, 106
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 2 cut(s) 72, 94
TaqI TCGA 2 cut(s) 138, 268
TasI AATT 1 cut(s) 7
TatI WGTACW 1 cut(s) 150
TauI GCSGC 2 cut(s) 82, 85
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 2 cut(s) 111, 210
Tru9I TTAA 2 cut(s) 111, 210
TseI GCWGC 1 cut(s) 24
TspGWI ACGGA 1 cut(s) 66
VneI GTGCAC 1 cut(s) 32
XapI RAATTY 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.