Rorug01G0284800

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
39916754 .. 39923179
6426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0284800.1

Sequence Viewer

Length: 1377 bp
ATGCCACGTGGCATGATAGTTAACGCCGTCATGGACGGCGGGGTCGTTTTGGTGCCCAGGCTTGACTTTGTTGTTCGGCGGCGGCTTCAAGAGACTCTGACGAGTTTCGGGTCGGATCGGGAGATTCCCTCGCACCCCACAACGATGGTGGAGAAAGGGAAGATGGAGAGGAGATGGAGAGGTGTGTGGATAGTGGCGGCTGTGCTGGTGCTGAGTCTCGGTTTGAGCTCGGCTGGAGATATAGTTCATCATGATAATATTGCTCCCAAGAGACCTGGTTGTGAAAACGACTTCGTTCTGGTAAAGGTTCCGACTTGGATCAACGGTGTAGAAGCCGACAAGTATGTTGGTGTCGGGGCTCGATTTGGACCTACCCTGGAATCAAAGGAGAAGCATGCCAATAATACTAGAGTGGTTCTGGCAGACCCCCCTGATTGTTGTACCAAACTCAAGAATAAGCTTGCACGTGAGGTCATTTTGGTACACCGAGGAAATTGCAGTTTTACCACCAAGGCAAATATGGCTGAATCTGCTAATGCTTCAGCCATCCTCATCATAAATAACCGTCCAGAACTTTTCAAGATGGTTTGTGAAGACGACGAGCCTGATGTCGAGATAGGCATACCTGCTGTTATGCTTCCCAACAAAATTGGTGAAATCTTGGAAAATGGATTAACGAACAATTCCATAGTTTCTGTGCAGCTATACTCTCCATTGCGTCCACTGGTTGACATTGCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATCTTATTTGCTTCTTATTGGTCTGCATGGACTGCAAGAGAAGCAGCTATTGAGCATGACAAGCTATTGAAGGATGCTTCTGACAAGTCTTCACGTGTGGAAGGTGAAGGTGCCAGTCCTCTAGTGGAGATTAGCACCATGGCAGCAATTCTCTTTGTTGTGATTGCTTCATGCTTCTTGGTTATGTTTTACAAACTTATGTCCTTCTGGTTCATCGAGATTCTGGTGGTTTTGTTTTGCATTGGTGGGATAGAGGTGGCTCGTGGTGATAAAAGTGGAGAGGATGGTATCCCAATGCTACTAAAAATCCCACGGATGTTTGATCCTTGGGGTGGCTACAGCATCATCGGGTTTGGTGATATTATCTTACCTGGATTGGTTGTAGCCTTTTCACTAAGGTATGATTGGTTGACAAATAAGACTCTTCGAACGGGTTACTTTGTGTGGGCAATGACAGCTTATGGTGCAGGTCTCCTGGTCACCTATGTGGCTTTGAACTTGATGGATGGACATGGCCAACCTGCTTTGTTATACATAGTTCCATTCACACTTGGTAAGATTCTAAGCTTGGATAATCTGGCAGTAACATGCATAGTGTGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

458

Amino Acids

50.36

Weight (kDa)

5.89

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 138 - 221 2.9e-11 PA domain
Peptidase_A22B PF04258 341 - 446 3e-41 Signal peptide peptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
Acc36I ACCTGC 3 cut(s) 634, 1229, 1300
Acc65I GGTACC 1 cut(s) 767
AccB1I GGYRCC 3 cut(s) 52, 767, 881
AciI CCGC 4 cut(s) 39, 79, 82, 197
AclWI GGATC 3 cut(s) 123, 326, 1088
AcoI YGGCCR 1 cut(s) 1285
AcuI CTGAAG 1 cut(s) 525
AcvI CACGTG 3 cut(s) 8, 467, 866
AfaI GTAC 3 cut(s) 442, 483, 769
AfiI CCNNNNNNNGG 1 cut(s) 1103
AflIII ACRYGT 1 cut(s) 865
AgsI TTSAA 4 cut(s) 89, 580, 841, 1267
AjnI CCWGG 5 cut(s) 56, 274, 375, 1141, 1245
AleI CACNNNNGTG 1 cut(s) 1256
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
AluBI AGCT 7 cut(s) 228, 460, 703, 818, 835, 1229, 1338
AluI AGCT 7 cut(s) 228, 460, 703, 818, 835, 1229, 1338
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 4 cut(s) 86, 221, 265, 1247
AlwI GGATC 3 cut(s) 123, 326, 1088
AoxI GGCC 1 cut(s) 1285
ApeKI GCWGC 3 cut(s) 700, 815, 914
Asp718I GGTACC 1 cut(s) 767
AspS9I GGNCC 1 cut(s) 368
AsuHPI GGTGA 5 cut(s) 665, 887, 1049, 1139, 1243
AsuII TTCGAA 1 cut(s) 1198
AvaII GGWCC 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 57
BalI TGGCCA 1 cut(s) 1287
BanI GGYRCC 3 cut(s) 52, 767, 881
BanII GRGCYC 2 cut(s) 230, 361
BauI CACGAG 1 cut(s) 1032
BbrPI CACGTG 3 cut(s) 8, 467, 866
BbsI GAAGAC 2 cut(s) 600, 852
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 3 cut(s) 712, 827, 926
BccI CCATC 9 cut(s) 139, 157, 168, 554, 577, 779, 1049, 1267, 1271
BceAI ACGGC 2 cut(s) 11, 52
BcgI CGANNNNNNTGC 2 cut(s) 477, 511
BciT130I CCWGG 5 cut(s) 58, 276, 377, 1143, 1247
BciVI GTATCC 1 cut(s) 1070
BcoDI GTCTC 4 cut(s) 86, 221, 265, 1247
BfaI CTAG 2 cut(s) 408, 893
BfmI CTRYAG 1 cut(s) 1108
BfuAI ACCTGC 3 cut(s) 634, 1229, 1300
BfuI GTATCC 1 cut(s) 1070
BisI GCNGC 6 cut(s) 80, 83, 198, 701, 816, 915
BlsI GCNGC 6 cut(s) 81, 84, 199, 702, 817, 916
Bme1390I CCNGG 5 cut(s) 58, 276, 377, 1143, 1247
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 4 cut(s) 54, 309, 769, 883
BmrFI CCNGG 5 cut(s) 58, 276, 377, 1143, 1247
BmsI GCATC 2 cut(s) 835, 1122
BpiI GAAGAC 2 cut(s) 600, 852
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpmI CTGGAG 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 1198
BpuEI CTTGAG 1 cut(s) 434
BsaAI YACGTR 3 cut(s) 8, 467, 866
BsaI GGTCTC 2 cut(s) 265, 1247
BsaJI CCNNGG 7 cut(s) 56, 375, 487, 510, 909, 1082, 1097
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 1103
Bse1I ACTGG 2 cut(s) 729, 885
Bse3DI GCAATG 3 cut(s) 713, 732, 1227
BseBI CCWGG 5 cut(s) 58, 276, 377, 1143, 1247
BseDI CCNNGG 7 cut(s) 56, 375, 487, 510, 909, 1082, 1097
BseGI GGATG 5 cut(s) 546, 850, 1060, 1092, 1282
BseLI CCNNNNNNNGG 1 cut(s) 1103
BseMI GCAATG 3 cut(s) 713, 732, 1227
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 2 cut(s) 729, 885
BseRI GAGGAG 1 cut(s) 184
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 3 cut(s) 712, 827, 926
BsgI GTGCAG 2 cut(s) 719, 1257
BshFI GGCC 1 cut(s) 1287
BshNI GGYRCC 3 cut(s) 52, 767, 881
BsiHKAI GWGCWC 1 cut(s) 230
BslI CCNNNNNNNGG 1 cut(s) 1103
BsmAI GTCTC 4 cut(s) 86, 221, 265, 1247
BsnI GGCC 1 cut(s) 1287
Bso31I GGTCTC 2 cut(s) 265, 1247
Bsp119I TTCGAA 1 cut(s) 1198
Bsp1286I GDGCHC 3 cut(s) 57, 230, 361
Bsp143I GATC 3 cut(s) 115, 318, 1093
Bsp19I CCATGG 1 cut(s) 909
BspACI CCGC 4 cut(s) 39, 79, 82, 197
BspANI GGCC 1 cut(s) 1287
BspCNI CTCAG 1 cut(s) 204
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 4 cut(s) 54, 309, 769, 883
BspMI ACCTGC 3 cut(s) 634, 1229, 1300
BspPI GGATC 3 cut(s) 123, 326, 1088
BspT104I TTCGAA 1 cut(s) 1198
BspT107I GGYRCC 3 cut(s) 52, 767, 881
BspTNI GGTCTC 2 cut(s) 265, 1247
BsrDI GCAATG 3 cut(s) 713, 732, 1227
BsrI ACTGG 2 cut(s) 729, 885
BssECI CCNNGG 7 cut(s) 56, 375, 487, 510, 909, 1082, 1097
BssMI GATC 3 cut(s) 115, 318, 1093
BssSI CACGAG 1 cut(s) 1032
BssT1I CCWWGG 3 cut(s) 510, 909, 1097
Bst2BI CACGAG 1 cut(s) 1032
Bst2UI CCWGG 5 cut(s) 58, 276, 377, 1143, 1247
Bst4CI ACNGT 2 cut(s) 326, 566
Bst6I CTCTTC 1 cut(s) 1200
BstAPI GCANNNNNTGC 2 cut(s) 803, 1368
BstBAI YACGTR 3 cut(s) 8, 467, 866
BstBI TTCGAA 1 cut(s) 1198
BstC8I GCNNGC 2 cut(s) 396, 462
BstDEI CTNAG 3 cut(s) 212, 1166, 1334
BstDSI CCRYGG 2 cut(s) 909, 1082
BstEII GGTNACC 1 cut(s) 1249
BstF5I GGATG 5 cut(s) 546, 850, 1060, 1092, 1282
BstKTI GATC 3 cut(s) 118, 321, 1096
BstMAI GTCTC 4 cut(s) 86, 221, 265, 1247
BstMBI GATC 3 cut(s) 115, 318, 1093
BstMWI GCNNNNNNNGC 8 cut(s) 521, 530, 803, 812, 832, 1226, 1235, 1368
BstNI CCWGG 5 cut(s) 58, 276, 377, 1143, 1247
BstNSI RCATGY 2 cut(s) 398, 1362
BstPI GGTNACC 1 cut(s) 1249
BstSCI CCNGG 5 cut(s) 56, 274, 375, 1141, 1245
BstSFI CTRYAG 1 cut(s) 1108
BstSLI GKGCMC 1 cut(s) 57
BstV1I GCAGC 3 cut(s) 712, 827, 926
BstV2I GAAGAC 2 cut(s) 600, 852
BstXI CCANNNNNNTGG 1 cut(s) 145
BsuI GTATCC 1 cut(s) 1070
BsuRI GGCC 1 cut(s) 1287
BtgI CCRYGG 2 cut(s) 909, 1082
BtsCI GGATG 5 cut(s) 546, 850, 1060, 1092, 1282
BtsIMutI CAGTG 1 cut(s) 722
BveI ACCTGC 3 cut(s) 634, 1229, 1300
Cac8I GCNNGC 2 cut(s) 396, 462
CciI TCATGA 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 368
CseI GACGC 1 cut(s) 707
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 3 cut(s) 441, 482, 768
CspCI CAANNNNNGTGG 2 cut(s) 129, 164
CviQI GTAC 3 cut(s) 441, 482, 768
DdeI CTNAG 3 cut(s) 212, 1166, 1334
DpnI GATC 3 cut(s) 117, 320, 1095
DpnII GATC 3 cut(s) 115, 318, 1093
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 1285
Eam1104I CTCTTC 1 cut(s) 1200
EarI CTCTTC 1 cut(s) 1200
Ecl136II GAGCTC 1 cut(s) 228
Eco130I CCWWGG 3 cut(s) 510, 909, 1097
Eco24I GRGCYC 2 cut(s) 230, 361
Eco31I GGTCTC 2 cut(s) 265, 1247
Eco47I GGWCC 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 525
Eco72I CACGTG 3 cut(s) 8, 467, 866
Eco91I GGTNACC 1 cut(s) 1249
EcoICRI GAGCTC 1 cut(s) 228
EcoO65I GGTNACC 1 cut(s) 1249
EcoRII CCWGG 5 cut(s) 56, 274, 375, 1141, 1245
EcoT14I CCWWGG 3 cut(s) 510, 909, 1097
EcoT22I ATGCAT 1 cut(s) 1364
EcoT38I GRGCYC 2 cut(s) 230, 361
ErhI CCWWGG 3 cut(s) 510, 909, 1097
FauI CCCGC 1 cut(s) 32
Fnu4HI GCNGC 6 cut(s) 80, 83, 198, 701, 816, 915
FokI GGATG 5 cut(s) 533, 857, 1067, 1099, 1289
FriOI GRGCYC 2 cut(s) 230, 361
Fsp4HI GCNGC 6 cut(s) 80, 83, 198, 701, 816, 915
FspBI CTAG 2 cut(s) 408, 893
GluI GCNGC 6 cut(s) 80, 83, 198, 701, 816, 915
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 1 cut(s) 1287
HgaI GACGC 1 cut(s) 707
HincII GTYRAC 3 cut(s) 22, 730, 1182
HindII GTYRAC 3 cut(s) 22, 730, 1182
HindIII AAGCTT 2 cut(s) 458, 1336
HinfI GANTC 8 cut(s) 94, 124, 214, 380, 527, 991, 1192, 1330
HpaI GTTAAC 1 cut(s) 22
HphI GGTGA 5 cut(s) 665, 887, 1049, 1139, 1243
Hpy166II GTNNAC 5 cut(s) 22, 484, 722, 730, 1182
Hpy188I TCNGA 5 cut(s) 99, 115, 312, 853, 1376
Hpy188III TCNNGA 8 cut(s) 89, 119, 251, 451, 569, 580, 613, 988
Hpy8I GTNNAC 5 cut(s) 22, 484, 722, 730, 1182
Hpy99I CGWCG 1 cut(s) 602
HpyAV CCTTC 4 cut(s) 835, 866, 872, 985
HpyCH4III ACNGT 2 cut(s) 326, 566
HpyCH4IV ACGT 3 cut(s) 7, 466, 865
HpyCH4V TGCA 9 cut(s) 464, 498, 700, 737, 797, 806, 1011, 1238, 1362
HpyF10VI GCNNNNNNNGC 8 cut(s) 521, 530, 803, 812, 832, 1226, 1235, 1368
HpyF3I CTNAG 3 cut(s) 212, 1166, 1334
HpySE526I ACGT 3 cut(s) 7, 466, 865
KpnI GGTACC 1 cut(s) 771
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 115, 318, 1093
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 3 cut(s) 712, 827, 926
LweI GCATC 2 cut(s) 835, 1122
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 2 cut(s) 408, 893
MaeII ACGT 3 cut(s) 7, 466, 865
MaeIII GTNAC 3 cut(s) 1205, 1249, 1354
MalI GATC 3 cut(s) 117, 320, 1095
MboI GATC 3 cut(s) 115, 318, 1093
MboII GAAGA 4 cut(s) 172, 605, 852, 1187
MhlI GDGCHC 3 cut(s) 57, 230, 361
MlsI TGGCCA 1 cut(s) 1287
MluCI AATT 4 cut(s) 493, 648, 682, 918
MluNI TGGCCA 1 cut(s) 1287
MlyI GAGTC 3 cut(s) 88, 223, 1186
MmeI TCCRAC 2 cut(s) 93, 335
MnlI CCTC 9 cut(s) 139, 162, 173, 463, 482, 560, 900, 1018, 1045
Mox20I TGGCCA 1 cut(s) 1287
Mph1103I ATGCAT 1 cut(s) 1364
MscI TGGCCA 1 cut(s) 1287
MseI TTAA 2 cut(s) 21, 674
MslI CAYNNNNRTG 2 cut(s) 143, 1256
Msp20I TGGCCA 1 cut(s) 1287
MspR9I CCNGG 5 cut(s) 58, 276, 377, 1143, 1247
MvaI CCWGG 5 cut(s) 58, 276, 377, 1143, 1247
MwoI GCNNNNNNNGC 8 cut(s) 521, 530, 803, 812, 832, 1226, 1235, 1368
NcoI CCATGG 1 cut(s) 909
NdeII GATC 3 cut(s) 115, 318, 1093
NlaIV GGNNCC 4 cut(s) 54, 309, 769, 883
NmeAIII GCCGAG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 1249
NsiI ATGCAT 1 cut(s) 1364
NspI RCATGY 2 cut(s) 398, 1362
NspV TTCGAA 1 cut(s) 1198
OliI CACNNNNGTG 1 cut(s) 1256
PaeI GCATGC 1 cut(s) 398
PagI TCATGA 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 5 cut(s) 124, 380, 527, 991, 1330
PkrI GCNGC 6 cut(s) 81, 84, 199, 702, 817, 916
PleI GAGTC 3 cut(s) 88, 222, 1186
PmaCI CACGTG 3 cut(s) 8, 467, 866
PmlI CACGTG 3 cut(s) 8, 467, 866
PpsI GAGTC 3 cut(s) 88, 222, 1186
Ppu21I YACGTR 3 cut(s) 8, 467, 866
Psp124BI GAGCTC 1 cut(s) 230
Psp6I CCWGG 5 cut(s) 56, 274, 375, 1141, 1245
PspCI CACGTG 3 cut(s) 8, 467, 866
PspEI GGTNACC 1 cut(s) 1249
PspGI CCWGG 5 cut(s) 56, 274, 375, 1141, 1245
PspN4I GGNNCC 4 cut(s) 54, 309, 769, 883
PspPI GGNCC 1 cut(s) 368
RsaI GTAC 3 cut(s) 442, 483, 769
RsaNI GTAC 3 cut(s) 441, 482, 768
RseI CAYNNNNRTG 2 cut(s) 143, 1256
SacI GAGCTC 1 cut(s) 230
SaqAI TTAA 2 cut(s) 21, 674
SatI GCNGC 6 cut(s) 80, 83, 198, 701, 816, 915
Sau3AI GATC 3 cut(s) 115, 318, 1093
Sau96I GGNCC 1 cut(s) 368
SchI GAGTC 3 cut(s) 88, 223, 1186
ScrFI CCNGG 5 cut(s) 58, 276, 377, 1143, 1247
SduI GDGCHC 3 cut(s) 57, 230, 361
SexAI ACCWGGT 1 cut(s) 274
SfaNI GCATC 2 cut(s) 835, 1122
SfcI CTRYAG 1 cut(s) 1108
SfuI TTCGAA 1 cut(s) 1198
SinI GGWCC 1 cut(s) 368
SmiMI CAYNNNNRTG 2 cut(s) 143, 1256
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
SphI GCATGC 1 cut(s) 398
Sse9I AATT 4 cut(s) 493, 648, 682, 918
SsiI CCGC 4 cut(s) 39, 79, 82, 197
SspI AATATT 1 cut(s) 259
SspMI CTAG 2 cut(s) 408, 893
SstI GAGCTC 1 cut(s) 230
StyD4I CCNGG 5 cut(s) 56, 274, 375, 1141, 1245
StyI CCWWGG 3 cut(s) 510, 909, 1097
TaaI ACNGT 2 cut(s) 326, 566
TaiI ACGT 3 cut(s) 10, 469, 868
TaqI TCGA 4 cut(s) 361, 612, 987, 1198
TasI AATT 4 cut(s) 493, 648, 682, 918
TauI GCSGC 3 cut(s) 82, 85, 200
TfiI GAWTC 5 cut(s) 124, 380, 527, 991, 1330
Tru1I TTAA 2 cut(s) 21, 674
Tru9I TTAA 2 cut(s) 21, 674
TscAI CASTG 1 cut(s) 729
TseFI GTSAC 1 cut(s) 1249
TseI GCWGC 3 cut(s) 700, 815, 914
Tsp45I GTSAC 1 cut(s) 1249
TspDTI ATGAA 3 cut(s) 236, 930, 973
TspGWI ACGGA 1 cut(s) 1099
TspRI CASTG 1 cut(s) 729
VpaK11BI GGWCC 1 cut(s) 368
XceI RCATGY 2 cut(s) 398, 1362
XcmI CCANNNNNNNNNTGG 3 cut(s) 145, 517, 892
XspI CTAG 2 cut(s) 408, 893
Zsp2I ATGCAT 1 cut(s) 1364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.