Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005121

Physical Location & Seq

Genomic Coordinates Forward (+)

23434135 .. 23435144

Gene Structure 1010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G197100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGGAATTGGGTTGGGAGGTACAAAGATTTAGTGCGTCCAAGTGAAGATCATAAAGAAATTCGTCACAGAACATCACCAAACAGCTTGAGTGTTAAGGTGAGAATGACTACCACGCAACTCAAGGAGTTGATGGCGCAGGTGGACATGATGAACATGGCGAAAGATCGAAATTCGGAGGAGCTAGGCCGGGTGATCCTGCAAGAATGCTTGGAAGGTAGGCTTACTGCTTGTATTGTTGCTGCTGCCGCTGAGCATCATGGTGATCAGGTATCAAAATATGCAAGGAGCAATTGGATGTTAAGCACAATTTGTGAAGGAAAAGAAGAACAACATGAGCATAGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

13.28

Weight (kDa)

6.59

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61930
fragaria_vesca	FvH4_7g17570
prunus_persica	Prupe.2G197000_v2.0.a1 Prupe.2G197100_v2.0.a1
rosa_laevigata	RLG00000008260 RLG00000027754 RLG00000027756
rosa_multiflora	Rmu_co8482767.1_g000001 Rmu_sc0000677.1_g000007 Rmu_sc0001238.1_g000046 Rmu_sc0001569.1_g000013 Rmu_sc0029763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295490 Rroxscaffold_4G00295520 Rroxscaffold_5G00357030
rosa_rugosa	Rorug01G0284300 Rorug01G0284800 Rorug04G0116600
rosa_samantha	Rh1AG296000 Rh1BG260600 Rh1CG277800 Rh1CG277900 Rh1DG290600 Rh4AG175400 Rh4BG175100 Rh4CG186600 Rh4DG172200
rosa_wichuraiana	Rw1G026160 Rw1G026170 Rw4G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	130
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	60, 172
AfaI	GTAC	1 cut(s)	23
AluBI	AGCT	2 cut(s)	87, 184
AluI	AGCT	2 cut(s)	87, 184
AlwI	GGATC	1 cut(s)	190
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	2 cut(s)	242, 245
ApoI	RAATTY	2 cut(s)	60, 172
AspLEI	GCGC	1 cut(s)	139
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	4 cut(s)	69, 112, 205, 275
BbvI	GCAGC	2 cut(s)	229, 232
BccI	CCATC	1 cut(s)	127
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	191
BfaI	CTAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	3 cut(s)	243, 246, 249
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	3 cut(s)	244, 247, 250
Bme1390I	CCNGG	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	265
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	107, 109
BpuMI	CCSGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	2 cut(s)	229, 232
BshFI	GGCC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	189
Bsp143I	GATC	4 cut(s)	49, 166, 195, 265
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	244
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	190
BssMI	GATC	4 cut(s)	49, 166, 195, 265
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	4 cut(s)	52, 169, 198, 268
BstMBI	GATC	4 cut(s)	49, 166, 195, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	229, 232
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	139
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	4 cut(s)	148, 157, 260, 335
CviJI	RGCY	4 cut(s)	87, 184, 189, 223
CviKI_1	RGCY	4 cut(s)	87, 184, 189, 223
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	4 cut(s)	51, 168, 197, 267
DpnII	GATC	4 cut(s)	49, 166, 195, 265
FaeI	CATG	4 cut(s)	151, 160, 263, 338
FaiI	YATR	7 cut(s)	54, 149, 158, 261, 282, 336, 342
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	4 cut(s)	147, 156, 259, 334
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	243, 246, 249
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	3 cut(s)	243, 246, 249
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	3 cut(s)	243, 246, 249
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	190
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	4 cut(s)	151, 160, 263, 338
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	4 cut(s)	69, 112, 205, 275
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	209, 311
HpyCH4V	TGCA	2 cut(s)	202, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	151, 160, 263, 338
HspAI	GCGC	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	49, 166, 195, 265
LmnI	GCTCC	2 cut(s)	181, 288
LpnPI	CCDG	4 cut(s)	125, 203, 212, 254
Lsp1109I	GCAGC	2 cut(s)	229, 232
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	4 cut(s)	51, 168, 197, 267
MboI	GATC	4 cut(s)	49, 166, 195, 265
MboII	GAAGA	2 cut(s)	59, 338
MfeI	CAATTG	1 cut(s)	292
MluCI	AATT	5 cut(s)	7, 60, 172, 292, 309
MnlI	CCTC	2 cut(s)	12, 172
MseI	TTAA	2 cut(s)	96, 302
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	292
Mva1269I	GAATGC	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	4 cut(s)	49, 166, 195, 265
NlaIII	CATG	4 cut(s)	151, 160, 263, 338
NmuCI	GTSAC	1 cut(s)	65
PaqCI	CACCTGC	1 cut(s)	130
PctI	GAATGC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	244, 247, 250
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	96, 302
SatI	GCNGC	3 cut(s)	243, 246, 249
Sau3AI	GATC	4 cut(s)	49, 166, 195, 265
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	7 cut(s)	23, 89, 102, 144, 186, 220, 273
SfaNI	GCATC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	88, 122
SmoI	CTYRAG	2 cut(s)	88, 122
Sse9I	AATT	5 cut(s)	7, 60, 172, 292, 309
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	189
TaqI	TCGA	1 cut(s)	169
TasI	AATT	5 cut(s)	7, 60, 172, 292, 309
TauI	GCSGC	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	96, 302
Tru9I	TTAA	2 cut(s)	96, 302
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	2 cut(s)	242, 245
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	167
XapI	RAATTY	2 cut(s)	60, 172
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.