Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005121

Physical Location & Seq

Genomic Coordinates Reverse (-)

39807105 .. 39808217

Gene Structure 1113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0284300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAATATAATTTTGACCCTACCTTTGAGTCGTAGTGCAACTTTGGATCAACAAATTTGGCACTTTAACAAGAGGGGTTTCTTTACTACAAACAGTGCATATTATGTGGCCAAGGATTTATCTCTTGGTTTGGTTTTAGCTCCAAAACCGCCTGTCGACCCACTTAGAGTGGTATGGAAAAAGGTTTGGAGTGCCAAAGTCCCTGGAAAAGTAGCGCTGCATGCTTGGAGAATTGTGGGAAATATTCTACCAACTCGGATAGTTAATACTAAGGGCTATAATGGCGAATTGGGGTGTGTTTTCTGCAATCATCCTCATGAAGATAGCCTACACTTGTTTGTGAACTGTCCGTATGCTAAAGAAGTATGGAATAGGGCTGGGATACCAATGTTGGGGGCTGTAAGTACTACCATTCAAGAGTGGTTTACAGGGGTTGTCAACAGATTCACCAAGGAGGAACTGTGTAAGATTCTTATGTTGATTTGGGGAATTTGGAAAAGTAGGAATTCACAAGTCTGGGAACAAAAAGGAAGGCATGCCTCTGAGACATGTTTTTTAACGCTTGGCTGGTATGAAGAGTTTAAAAAACATAATGTCTCGTCGTTGGTTCGACAGGCAAGGTTAATAGGATGGAAGGCACCAAATCCGGGAAAGGTAAAGATCAATGTTGATGGTGCATATCAGGTGGAATCTAGACGAGGAGGAGTGGGATGTGTAATCCGAGATAGTGATGGCAGCTTTGGACAGGCTCGGCCATATACCCTTCTCACTTCTCCATTTCATGCTGAATTACTAGCTTTGCGAGATGGACTCTTTCTAGCTCAAACACTGCAGCAAGATGAGGTAATTTTTGAAAGTGACTGTGCACTTTTGGTACAAGCTATCCAGTCTCCAACTTATGACCTTTCTACTATGCATATATTGATTGGGGAAGTTAGAACTTTGTTACAAACCCATCCTGGGTTCAGTCTTACTCATGTAAACAGAGAAGCAAATGTAGTTGCACATTTGCTTGCTTCTCATGCGCTGAGAACTAGTGATAGTCAAATGTGGCTTGTAACAGCTCCCGAAATTATAAGGGATGCCATTCGAAACGATGTAATCGTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

370

Amino Acids

41.64

Weight (kDa)

9.12

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	57 - 123	4.3e-13	zinc-binding in reverse transcriptase
RVT_3	PF13456	222 - 342	7.4e-24	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61930
fragaria_vesca	FvH4_7g17570
prunus_persica	Prupe.2G197000_v2.0.a1 Prupe.2G197100_v2.0.a1
rosa_laevigata	RLG00000008260 RLG00000027754 RLG00000027756
rosa_multiflora	Rmu_co8482767.1_g000001 Rmu_sc0000677.1_g000007 Rmu_sc0001238.1_g000046 Rmu_sc0001569.1_g000013 Rmu_sc0029763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295490 Rroxscaffold_4G00295520 Rroxscaffold_5G00357030
rosa_rugosa	Rorug01G0284300 Rorug01G0284800 Rorug04G0116600
rosa_samantha	Rh1AG296000 Rh1BG260600 Rh1CG277800 Rh1CG277900 Rh1DG290600 Rh4AG175400 Rh4BG175100 Rh4CG186600 Rh4DG172200
rosa_wichuraiana	Rw1G026160 Rw1G026170 Rw4G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1076
AccB1I	GGYRCC	1 cut(s)	637
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	1 cut(s)	54
AcoI	YGGCCR	2 cut(s)	108, 752
AcsI	RAATTY	3 cut(s)	54, 489, 505
AfaI	GTAC	2 cut(s)	406, 876
AfeI	AGCGCT	1 cut(s)	216
AfiI	CCNNNNNNNGG	3 cut(s)	392, 647, 960
AflIII	ACRYGT	1 cut(s)	548
AgsI	TTSAA	2 cut(s)	416, 854
AhlI	ACTAGT	1 cut(s)	1034
AjnI	CCWGG	2 cut(s)	202, 958
AluBI	AGCT	6 cut(s)	140, 738, 797, 821, 881, 1064
AluI	AGCT	6 cut(s)	140, 738, 797, 821, 881, 1064
Alw21I	GWGCWC	1 cut(s)	868
Alw26I	GTCTC	3 cut(s)	539, 601, 894
Alw44I	GTGCAC	1 cut(s)	864
AlwI	GGATC	1 cut(s)	54
Aor51HI	AGCGCT	1 cut(s)	216
AoxI	GGCC	2 cut(s)	108, 752
ApaLI	GTGCAC	1 cut(s)	864
ApeKI	GCWGC	3 cut(s)	217, 735, 832
ApoI	RAATTY	3 cut(s)	54, 489, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
AspLEI	GCGC	2 cut(s)	217, 1027
AsuC2I	CCSGG	1 cut(s)	648
AsuHPI	GGTGA	1 cut(s)	439
AsuII	TTCGAA	1 cut(s)	1090
BaeGI	GKGCMC	1 cut(s)	868
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BalI	TGGCCA	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	637
BarI	GAAGNNNNNNTAC	2 cut(s)	312, 344
Bbv12I	GWGCWC	1 cut(s)	868
BbvI	GCAGC	3 cut(s)	204, 747, 844
BccI	CCATC	5 cut(s)	624, 665, 725, 800, 963
BciT130I	CCWGG	2 cut(s)	204, 960
BciVI	GTATCC	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	648
BcoDI	GTCTC	3 cut(s)	539, 601, 894
BcuI	ACTAGT	1 cut(s)	1034
BfaI	CTAG	4 cut(s)	693, 794, 818, 1035
BfmI	CTRYAG	1 cut(s)	830
BfoI	RGCGCY	1 cut(s)	218
BfuI	GTATCC	1 cut(s)	375
BisI	GCNGC	3 cut(s)	218, 736, 833
BlsI	GCNGC	3 cut(s)	219, 737, 834
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	3 cut(s)	204, 648, 960
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	3 cut(s)	204, 648, 960
BmsI	GCATC	1 cut(s)	1072
BplI	GAGNNNNNCTC	2 cut(s)	795, 827
Bpu14I	TTCGAA	1 cut(s)	1090
BpuMI	CCSGG	1 cut(s)	648
BsaJI	CCNNGG	4 cut(s)	111, 202, 450, 959
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 647, 960
Bse1I	ACTGG	1 cut(s)	886
BseBI	CCWGG	2 cut(s)	204, 960
BseDI	CCNNGG	4 cut(s)	111, 202, 450, 959
BseGI	GGATG	5 cut(s)	310, 635, 716, 955, 1087
BseLI	CCNNNNNNNGG	3 cut(s)	392, 647, 960
BseMII	CTCAG	2 cut(s)	534, 1019
BseNI	ACTGG	1 cut(s)	886
BseRI	GAGGAG	2 cut(s)	714, 717
BseSI	GKGCMC	1 cut(s)	868
BseXI	GCAGC	3 cut(s)	204, 747, 844
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	2 cut(s)	110, 754
BshNI	GGYRCC	1 cut(s)	637
BsiHKAI	GWGCWC	1 cut(s)	868
BsiSI	CCGG	1 cut(s)	647
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	3 cut(s)	392, 647, 960
BsmAI	GTCTC	3 cut(s)	539, 601, 894
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	110, 754
Bsp119I	TTCGAA	1 cut(s)	1090
Bsp1286I	GDGCHC	1 cut(s)	868
Bsp143I	GATC	2 cut(s)	46, 660
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	2 cut(s)	110, 754
BspCNI	CTCAG	2 cut(s)	535, 1020
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	639
BspMAI	CTGCAG	1 cut(s)	834
BspPI	GGATC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	1090
BspT107I	GGYRCC	1 cut(s)	637
BsrI	ACTGG	1 cut(s)	886
BssECI	CCNNGG	4 cut(s)	111, 202, 450, 959
BssMI	GATC	2 cut(s)	46, 660
BssT1I	CCWWGG	2 cut(s)	111, 450
Bst2UI	CCWGG	2 cut(s)	204, 960
Bst4CI	ACNGT	4 cut(s)	95, 347, 462, 863
Bst6I	CTCTTC	1 cut(s)	570
BstBI	TTCGAA	1 cut(s)	1090
BstC8I	GCNNGC	3 cut(s)	222, 537, 1014
BstDEI	CTNAG	4 cut(s)	164, 270, 543, 1028
BstF5I	GGATG	5 cut(s)	310, 635, 716, 955, 1087
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	2 cut(s)	217, 1027
BstKTI	GATC	2 cut(s)	49, 663
BstMAI	GTCTC	3 cut(s)	539, 601, 894
BstMBI	GATC	2 cut(s)	46, 660
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 282, 1022
BstNI	CCWGG	2 cut(s)	204, 960
BstNSI	RCATGY	3 cut(s)	224, 539, 552
BstSCI	CCNGG	3 cut(s)	202, 646, 958
BstSFI	CTRYAG	1 cut(s)	830
BstSLI	GKGCMC	1 cut(s)	868
BstV1I	GCAGC	3 cut(s)	204, 747, 844
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	110, 754
BtsCI	GGATG	5 cut(s)	310, 635, 716, 955, 1087
BtsI	GCAGTG	1 cut(s)	827
BtsIMutI	CAGTG	2 cut(s)	100, 827
Cac8I	GCNNGC	3 cut(s)	222, 537, 1014
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	2 cut(s)	217, 1027
Csp6I	GTAC	2 cut(s)	405, 875
CviAII	CATG	7 cut(s)	221, 317, 536, 549, 782, 977, 1022
CviQI	GTAC	2 cut(s)	405, 875
DdeI	CTNAG	4 cut(s)	164, 270, 543, 1028
DpnI	GATC	2 cut(s)	48, 662
DpnII	GATC	2 cut(s)	46, 660
DraI	TTTAAA	1 cut(s)	583
EaeI	YGGCCR	2 cut(s)	108, 752
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco130I	CCWWGG	2 cut(s)	111, 450
Eco47III	AGCGCT	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	202, 958
EcoT14I	CCWWGG	2 cut(s)	111, 450
EcoT22I	ATGCAT	1 cut(s)	918
ErhI	CCWWGG	2 cut(s)	111, 450
FaeI	CATG	7 cut(s)	224, 320, 539, 552, 785, 980, 1025
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	7 cut(s)	220, 316, 535, 548, 781, 976, 1021
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	218, 736, 833
FokI	GGATG	5 cut(s)	297, 642, 723, 942, 1094
Fsp4HI	GCNGC	3 cut(s)	218, 736, 833
FspBI	CTAG	4 cut(s)	693, 794, 818, 1035
GlaI	GCGC	2 cut(s)	216, 1026
GluI	GCNGC	3 cut(s)	218, 736, 833
GsaI	CCCAGC	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	110, 754
HapII	CCGG	1 cut(s)	647
HhaI	GCGC	2 cut(s)	217, 1027
Hin1II	CATG	7 cut(s)	224, 320, 539, 552, 785, 980, 1025
Hin6I	GCGC	2 cut(s)	215, 1025
HinP1I	GCGC	2 cut(s)	215, 1025
HincII	GTYRAC	2 cut(s)	157, 439
HindII	GTYRAC	2 cut(s)	157, 439
HinfI	GANTC	5 cut(s)	28, 444, 469, 689, 810
HpaII	CCGG	1 cut(s)	647
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	6 cut(s)	157, 343, 426, 439, 866, 982
Hpy188I	TCNGA	4 cut(s)	258, 544, 722, 1112
Hpy188III	TCNNGA	4 cut(s)	317, 416, 693, 1067
Hpy8I	GTNNAC	6 cut(s)	157, 343, 426, 439, 866, 982
Hpy99I	CGWCG	1 cut(s)	604
HpyAV	CCTTC	3 cut(s)	525, 628, 773
HpyCH4III	ACNGT	4 cut(s)	95, 347, 462, 863
HpyCH4V	TGCA	9 cut(s)	38, 98, 220, 306, 677, 832, 866, 916, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 282, 1022
HpyF3I	CTNAG	4 cut(s)	164, 270, 543, 1028
Hsp92II	CATG	7 cut(s)	224, 320, 539, 552, 785, 980, 1025
HspAI	GCGC	2 cut(s)	215, 1025
Kzo9I	GATC	2 cut(s)	46, 660
LmnI	GCTCC	2 cut(s)	145, 1069
Lsp1109I	GCAGC	3 cut(s)	204, 747, 844
LweI	GCATC	1 cut(s)	1072
MaeI	CTAG	4 cut(s)	693, 794, 818, 1035
MaeIII	GTNAC	3 cut(s)	857, 945, 1057
MalI	GATC	2 cut(s)	48, 662
MboI	GATC	2 cut(s)	46, 660
MboII	GAAGA	2 cut(s)	332, 587
MhlI	GDGCHC	1 cut(s)	868
MlsI	TGGCCA	1 cut(s)	110
MluCI	AATT	9 cut(s)	9, 54, 231, 287, 489, 505, 788, 846, 1071
MluNI	TGGCCA	1 cut(s)	110
MlyI	GAGTC	2 cut(s)	37, 804
MmeI	TCCRAC	1 cut(s)	917
MnlI	CCTC	7 cut(s)	66, 324, 448, 550, 692, 695, 835
Mox20I	TGGCCA	1 cut(s)	110
Mph1103I	ATGCAT	1 cut(s)	918
MscI	TGGCCA	1 cut(s)	110
MseI	TTAA	5 cut(s)	66, 264, 557, 582, 623
MslI	CAYNNNNRTG	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	110
MspI	CCGG	1 cut(s)	647
MspR9I	CCNGG	3 cut(s)	204, 648, 960
MvaI	CCWGG	2 cut(s)	204, 960
MwoI	GCNNNNNNNGC	3 cut(s)	221, 282, 1022
NciI	CCSGG	1 cut(s)	648
NdeII	GATC	2 cut(s)	46, 660
NlaIII	CATG	7 cut(s)	224, 320, 539, 552, 785, 980, 1025
NlaIV	GGNNCC	1 cut(s)	639
NmeAIII	GCCGAG	1 cut(s)	730
NmuCI	GTSAC	1 cut(s)	857
NsiI	ATGCAT	1 cut(s)	918
NspI	RCATGY	3 cut(s)	224, 539, 552
NspV	TTCGAA	1 cut(s)	1090
PaeI	GCATGC	2 cut(s)	224, 539
PagI	TCATGA	1 cut(s)	316
PciI	ACATGT	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	1 cut(s)	1101
PfeI	GAWTC	3 cut(s)	444, 469, 689
PfoI	TCCNGGA	1 cut(s)	646
PkrI	GCNGC	3 cut(s)	219, 737, 834
PleI	GAGTC	2 cut(s)	36, 804
PpsI	GAGTC	2 cut(s)	36, 804
PscI	ACATGT	1 cut(s)	548
PsiI	TTATAA	1 cut(s)	1076
Psp6I	CCWGG	2 cut(s)	202, 958
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	202, 958
PspN4I	GGNNCC	1 cut(s)	639
PstI	CTGCAG	1 cut(s)	834
RsaI	GTAC	2 cut(s)	406, 876
RsaNI	GTAC	2 cut(s)	405, 875
RseI	CAYNNNNRTG	1 cut(s)	315
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	5 cut(s)	66, 264, 557, 582, 623
SatI	GCNGC	3 cut(s)	218, 736, 833
Sau3AI	GATC	2 cut(s)	46, 660
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	2 cut(s)	37, 804
ScrFI	CCNGG	3 cut(s)	204, 648, 960
SduI	GDGCHC	1 cut(s)	868
SfaNI	GCATC	1 cut(s)	1072
SfcI	CTRYAG	1 cut(s)	830
SfuI	TTCGAA	1 cut(s)	1090
SmiMI	CAYNNNNRTG	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	1034
SphI	GCATGC	2 cut(s)	224, 539
Sse9I	AATT	9 cut(s)	9, 54, 231, 287, 489, 505, 788, 846, 1071
SsiI	CCGC	1 cut(s)	149
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	4 cut(s)	693, 794, 818, 1035
StyD4I	CCNGG	3 cut(s)	202, 646, 958
StyI	CCWWGG	2 cut(s)	111, 450
TaaI	ACNGT	4 cut(s)	95, 347, 462, 863
TaqI	TCGA	3 cut(s)	156, 610, 1090
TasI	AATT	9 cut(s)	9, 54, 231, 287, 489, 505, 788, 846, 1071
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	3 cut(s)	444, 469, 689
Tru1I	TTAA	5 cut(s)	66, 264, 557, 582, 623
Tru9I	TTAA	5 cut(s)	66, 264, 557, 582, 623
TscAI	CASTG	2 cut(s)	100, 834
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	3 cut(s)	217, 735, 832
Tsp45I	GTSAC	1 cut(s)	857
TspDTI	ATGAA	4 cut(s)	17, 333, 588, 770
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	2 cut(s)	100, 834
VneI	GTGCAC	1 cut(s)	864
XapI	RAATTY	3 cut(s)	54, 489, 505
XbaI	TCTAGA	1 cut(s)	692
XceI	RCATGY	3 cut(s)	224, 539, 552
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	4 cut(s)	693, 794, 818, 1035
ZrmI	AGTACT	1 cut(s)	406
Zsp2I	ATGCAT	1 cut(s)	918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.