Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005121

Physical Location & Seq

Genomic Coordinates Forward (+)

23432175 .. 23432823

Gene Structure 649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G197000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGAAATTGGGTTGGGAGGTACAAAGGTGTTCACCCAACTGAAGATCAAGCAAGACATAGAACTTCATCGTCATCGTCATCAAACAGTCTGAGAATTAAGGTTCGTATGACTGCCAAGCAATTCAAGGAGTTGATGGCGGAGGTGGACGCGACCAAAATCCCCAATTCGAATTCGGAGCTAGGCCGCTTGATCCTCCGGGAATGCTTGGAAGGTAGGTCCTGCGCTCGTGTTGTTGCTGCTGCTGAGAATCATGAGCAACATGCAAGGGGTTGGAAGTTGAGCACCATTCATGATCATAGTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.44

Weight (kDa)

9.69

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61930
fragaria_vesca	FvH4_7g17570
prunus_persica	Prupe.2G197000_v2.0.a1 Prupe.2G197100_v2.0.a1
rosa_laevigata	RLG00000008260 RLG00000027754 RLG00000027756
rosa_multiflora	Rmu_co8482767.1_g000001 Rmu_sc0000677.1_g000007 Rmu_sc0001238.1_g000046 Rmu_sc0001569.1_g000013 Rmu_sc0029763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295490 Rroxscaffold_4G00295520 Rroxscaffold_5G00357030
rosa_rugosa	Rorug01G0284300 Rorug01G0284800 Rorug04G0116600
rosa_samantha	Rh1AG296000 Rh1BG260600 Rh1CG277800 Rh1CG277900 Rh1DG290600 Rh4AG175400 Rh4BG175100 Rh4CG186600 Rh4DG172200
rosa_wichuraiana	Rw1G026160 Rw1G026170 Rw4G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	152
AciI	CCGC	2 cut(s)	140, 187
AclWI	GGATC	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	127
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	287
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	239, 242
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	219
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	26
AsuII	TTCGAA	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	219
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BauI	CACGAG	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	226, 229
BccI	CCATC	1 cut(s)	130
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	3 cut(s)	187, 240, 243
BlsI	GCNGC	3 cut(s)	188, 241, 244
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	200
Bpu14I	TTCGAA	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	200
BseMII	CTCAG	2 cut(s)	83, 237
BseXI	GCAGC	2 cut(s)	226, 229
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	186
Bsp119I	TTCGAA	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	46, 192, 295
BspACI	CCGC	2 cut(s)	140, 187
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	2 cut(s)	84, 238
BspFNI	CGCG	1 cut(s)	152
BspHI	TCATGA	2 cut(s)	253, 292
BspPI	GGATC	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	170
BssMI	GATC	3 cut(s)	46, 192, 295
BssSI	CACGAG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	89
BstBI	TTCGAA	1 cut(s)	170
BstDEI	CTNAG	2 cut(s)	92, 246
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	3 cut(s)	49, 195, 298
BstMBI	GATC	3 cut(s)	46, 192, 295
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	226, 229
BsuRI	GGCC	1 cut(s)	186
CciI	TCATGA	2 cut(s)	253, 292
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	219
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	3 cut(s)	254, 263, 293
CviJI	RGCY	2 cut(s)	181, 186
CviKI_1	RGCY	2 cut(s)	181, 186
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	2 cut(s)	92, 246
DpnI	GATC	3 cut(s)	48, 194, 297
DpnII	GATC	3 cut(s)	46, 192, 295
EciI	GGCGGA	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	172
FaeI	CATG	3 cut(s)	257, 266, 296
FaiI	YATR	6 cut(s)	60, 110, 255, 264, 294, 300
FatI	CATG	3 cut(s)	253, 262, 292
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	187, 240, 243
Fsp4HI	GCNGC	3 cut(s)	187, 240, 243
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	3 cut(s)	187, 240, 243
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	1 cut(s)	199
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	257, 266, 296
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	1 cut(s)	199
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	34, 148
Hpy188I	TCNGA	2 cut(s)	93, 178
Hpy188III	TCNNGA	2 cut(s)	254, 293
Hpy8I	GTNNAC	2 cut(s)	34, 148
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	92, 246
Hsp92II	CATG	3 cut(s)	257, 266, 296
HspAI	GCGC	1 cut(s)	225
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	46, 192, 295
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	2 cut(s)	212, 235
Lsp1109I	GCAGC	2 cut(s)	226, 229
MaeI	CTAG	1 cut(s)	182
MalI	GATC	3 cut(s)	48, 194, 297
MboI	GATC	3 cut(s)	46, 192, 295
MboII	GAAGA	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	5 cut(s)	7, 96, 122, 166, 172
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	3 cut(s)	12, 136, 206
MseI	TTAA	1 cut(s)	99
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	209
MvnI	CGCG	1 cut(s)	152
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	3 cut(s)	46, 192, 295
NlaIII	CATG	3 cut(s)	257, 266, 296
NspI	RCATGY	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	170
PagI	TCATGA	2 cut(s)	253, 292
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	250
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	188, 241, 244
PpuMI	RGGWCCY	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	219
PspPPI	RGGWCCY	1 cut(s)	219
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	3 cut(s)	187, 240, 243
Sau3AI	GATC	3 cut(s)	46, 192, 295
Sau96I	GGNCC	1 cut(s)	219
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	7 cut(s)	23, 31, 105, 147, 183, 217, 221
SfuI	TTCGAA	1 cut(s)	170
SinI	GGWCC	1 cut(s)	219
Sse9I	AATT	5 cut(s)	7, 96, 122, 166, 172
SsiI	CCGC	2 cut(s)	140, 187
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	170
TasI	AATT	5 cut(s)	7, 96, 122, 166, 172
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseI	GCWGC	2 cut(s)	239, 242
TspDTI	ATGAA	2 cut(s)	57, 281
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	172
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.