Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005121

Physical Location & Seq

Genomic Coordinates Reverse (-)

15529746 .. 15530087

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGGGAATTGGATTGGGAAGGAAATGAGTGTACACCCGATTGTTGAAGGTGAAGGAGTACGTATGTGGAGTTGGATCAAACAGTCTGATCGAATTAAAGTGCAGATGACTAAAAGAAAGCTTAAGGAGTTTATAACGCAGGTGGACATGACCAACGGCGGCGATAACTCGGAGGAGCTTGGCGGTGTGATCCTAAAAGAATGCTTGGAAGGTAGGCTTAGCGCTCGTGTTGTCGTTGTTGCCACCGAAGAAGATCGTGATCCAAAGGTATCAATGTCTTCGAAGTGTAGGATGTTGAGCACCAGTTCGAGGAAGAAGAGCACCATCATCTGTTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.73

Weight (kDa)

9.0

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61930
fragaria_vesca	FvH4_7g17570
prunus_persica	Prupe.2G197000_v2.0.a1 Prupe.2G197100_v2.0.a1
rosa_laevigata	RLG00000008260 RLG00000027754 RLG00000027756
rosa_multiflora	Rmu_co8482767.1_g000001 Rmu_sc0000677.1_g000007 Rmu_sc0001238.1_g000046 Rmu_sc0001569.1_g000013 Rmu_sc0029763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295490 Rroxscaffold_4G00295520 Rroxscaffold_5G00357030
rosa_rugosa	Rorug01G0284300 Rorug01G0284800 Rorug04G0116600
rosa_samantha	Rh1AG296000 Rh1BG260600 Rh1CG277800 Rh1CG277900 Rh1DG290600 Rh4AG175400 Rh4BG175100 Rh4CG186600 Rh4DG172200
rosa_wichuraiana	Rw1G026160 Rw1G026170 Rw4G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	134
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	130
AciI	CCGC	2 cut(s)	159, 183
AclWI	GGATC	3 cut(s)	83, 184, 254
AfaI	GTAC	2 cut(s)	33, 60
AfeI	AGCGCT	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	309
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	47
AluBI	AGCT	2 cut(s)	121, 178
AluI	AGCT	2 cut(s)	121, 178
Alw21I	GWGCWC	2 cut(s)	302, 323
AlwI	GGATC	3 cut(s)	83, 184, 254
Aor51HI	AGCGCT	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	62
AsuII	TTCGAA	1 cut(s)	281
BauI	CACGAG	1 cut(s)	225
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	2 cut(s)	302, 323
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	225
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	1 cut(s)	160
BlpI	GCTNAGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	270
Bpu1102I	GCTNAGC	1 cut(s)	218
Bpu14I	TTCGAA	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse1I	ACTGG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	258
BseGI	GGATG	1 cut(s)	297
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	122
BsiHKAI	GWGCWC	2 cut(s)	302, 323
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	302, 323
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	5 cut(s)	75, 88, 189, 253, 259
Bsp1720I	GCTNAGC	1 cut(s)	218
BspACI	CCGC	2 cut(s)	159, 183
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	3 cut(s)	83, 184, 254
BspQI	GCTCTTC	1 cut(s)	311
BspT104I	TTCGAA	1 cut(s)	281
BspTI	CTTAAG	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	303
BssMI	GATC	5 cut(s)	75, 88, 189, 253, 259
BssSI	CACGAG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	311
BstAFI	CTTAAG	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	297
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	5 cut(s)	78, 91, 192, 256, 262
BstMBI	GATC	5 cut(s)	75, 88, 189, 253, 259
BstSNI	TACGTA	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	32, 59
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	3 cut(s)	121, 178, 217
CviKI_1	RGCY	3 cut(s)	121, 178, 217
CviQI	GTAC	2 cut(s)	32, 59
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	5 cut(s)	77, 90, 191, 255, 261
DpnII	GATC	5 cut(s)	75, 88, 189, 253, 259
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco105I	TACGTA	1 cut(s)	62
Eco47III	AGCGCT	1 cut(s)	223
FaeI	CATG	1 cut(s)	151
FaiI	YATR	3 cut(s)	65, 134, 149
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	160
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	225
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	119
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	3 cut(s)	32, 34, 145
Hpy188I	TCNGA	2 cut(s)	88, 172
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	3 cut(s)	32, 34, 145
HpyAV	CCTTC	4 cut(s)	13, 41, 47, 203
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	1 cut(s)	103
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	5 cut(s)	75, 88, 189, 253, 259
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	2 cut(s)	125, 316
MaeII	ACGT	1 cut(s)	61
MalI	GATC	5 cut(s)	77, 90, 191, 255, 261
MboI	GATC	5 cut(s)	75, 88, 189, 253, 259
MboII	GAAGA	5 cut(s)	260, 263, 270, 325, 328
MhlI	GDGCHC	2 cut(s)	302, 323
MluCI	AATT	3 cut(s)	7, 93, 337
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	2 cut(s)	166, 303
MseI	TTAA	3 cut(s)	96, 123, 340
MspCI	CTTAAG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	206
NdeII	GATC	5 cut(s)	75, 88, 189, 253, 259
NlaIII	CATG	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	281
PaqCI	CACCTGC	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	161
Ppu21I	YACGTR	1 cut(s)	62
PsiI	TTATAA	1 cut(s)	134
RsaI	GTAC	2 cut(s)	33, 60
RsaNI	GTAC	2 cut(s)	32, 59
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	3 cut(s)	96, 123, 340
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	5 cut(s)	75, 88, 189, 253, 259
SduI	GDGCHC	2 cut(s)	302, 323
SetI	ASST	7 cut(s)	52, 64, 123, 144, 180, 214, 270
SfuI	TTCGAA	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SnaBI	TACGTA	1 cut(s)	62
Sse9I	AATT	3 cut(s)	7, 93, 337
SsiI	CCGC	2 cut(s)	159, 183
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	3 cut(s)	91, 281, 308
TasI	AATT	3 cut(s)	7, 93, 337
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	162
Tru1I	TTAA	3 cut(s)	96, 123, 340
Tru9I	TTAA	3 cut(s)	96, 123, 340
Vha464I	CTTAAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.