Rh4AG175400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005121
Physical Location & Seq
Forward (+)
44017053 .. 44017997
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG175400.1

Sequence Viewer

Length: 336 bp
ATGGGGAATTGGGTTGGGAAGGAAAGGGGTGTTCACCCAGTTGCTGAAGATGAAGGACTACATGGAGTTGGATCAAACAGTCTGATGAGAATTAAGCTGCGGATGACTAAAAGAGAGCTCAAAGAGTTGATGGCGCAGGTAGACATGACCAACGGCGGCGATAAATCGGAGGAGCTAGGCGGCTTGATCCTGAAAGAATGCTTGGAAGGTAGGCTCTGTGCTCGTGTTGTCGCTGTTGCTGCTGATGAAGATAGTGATCCAAAGGTATCAAAATATGTGAAGGGTTGGATCTTGAGCACCAGTTCAGAAGAAGAAGAGCACCATCATCTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.27

Weight (kDa)

5.52

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 141
AciI CCGC 3 cut(s) 100, 156, 180
AclWI GGATC 4 cut(s) 79, 181, 251, 296
AcuI CTGAAG 1 cut(s) 66
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 3 cut(s) 97, 118, 175
AluI AGCT 3 cut(s) 97, 118, 175
Alw21I GWGCWC 4 cut(s) 120, 223, 299, 321
AlwI GGATC 4 cut(s) 79, 181, 251, 296
AlwNI CAGNNNCTG 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 97, 239
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 26
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 222
Bbv12I GWGCWC 4 cut(s) 120, 223, 299, 321
BbvI GCAGC 2 cut(s) 84, 226
BccI CCATC 2 cut(s) 124, 330
BceAI ACGGC 1 cut(s) 169
BfaI CTAG 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 127
BisI GCNGC 4 cut(s) 98, 157, 181, 240
BlsI GCNGC 4 cut(s) 99, 158, 182, 241
BmrI ACTGGG 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 313
BsaBI GATNNNNATC 1 cut(s) 255
Bse1I ACTGG 2 cut(s) 38, 300
Bse8I GATNNNNATC 1 cut(s) 255
BseGI GGATG 1 cut(s) 108
BseJI GATNNNNATC 1 cut(s) 255
BseNI ACTGG 2 cut(s) 38, 300
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 84, 226
BsiHKAI GWGCWC 4 cut(s) 120, 223, 299, 321
BsmI GAATGC 1 cut(s) 203
Bsp1286I GDGCHC 4 cut(s) 120, 223, 299, 321
Bsp143I GATC 4 cut(s) 71, 186, 256, 288
BspACI CCGC 3 cut(s) 100, 156, 180
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 4 cut(s) 79, 181, 251, 296
BspQI GCTCTTC 1 cut(s) 309
BsrI ACTGG 2 cut(s) 38, 300
BssMI GATC 4 cut(s) 71, 186, 256, 288
BssSI CACGAG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 309
BstF5I GGATG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 4 cut(s) 74, 189, 259, 291
BstMBI GATC 4 cut(s) 71, 186, 256, 288
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 84, 226
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BtsCI GGATG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 44
CfoI GCGC 1 cut(s) 136
CviAII CATG 2 cut(s) 62, 145
CviJI RGCY 5 cut(s) 97, 118, 175, 183, 214
CviKI_1 RGCY 5 cut(s) 97, 118, 175, 183, 214
DpnI GATC 4 cut(s) 73, 188, 258, 290
DpnII GATC 4 cut(s) 71, 186, 256, 288
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 66
EcoICRI GAGCTC 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 120
FaeI CATG 2 cut(s) 65, 148
FaiI YATR 3 cut(s) 63, 146, 276
FatI CATG 2 cut(s) 61, 144
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 4 cut(s) 98, 157, 181, 240
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 4 cut(s) 98, 157, 181, 240
FspBI CTAG 1 cut(s) 176
GlaI GCGC 1 cut(s) 135
GluI GCNGC 4 cut(s) 98, 157, 181, 240
HhaI GCGC 1 cut(s) 136
Hin1II CATG 2 cut(s) 65, 148
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 34, 142
Hpy188I TCNGA 3 cut(s) 84, 169, 307
Hpy188III TCNNGA 2 cut(s) 190, 292
Hpy8I GTNNAC 2 cut(s) 34, 142
HpyAV CCTTC 4 cut(s) 13, 47, 200, 274
HpyCH4III ACNGT 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
Hsp92II CATG 2 cut(s) 65, 148
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 4 cut(s) 71, 186, 256, 288
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 51, 122, 203, 313
Lsp1109I GCAGC 2 cut(s) 84, 226
MaeI CTAG 1 cut(s) 176
MalI GATC 4 cut(s) 73, 188, 258, 290
MboI GATC 4 cut(s) 71, 186, 256, 288
MboII GAAGA 5 cut(s) 59, 260, 320, 323, 326
MflI RGATCY 1 cut(s) 288
MhlI GDGCHC 4 cut(s) 120, 223, 299, 321
MluCI AATT 2 cut(s) 7, 90
MmeI TCCRAC 2 cut(s) 49, 266
MnlI CCTC 1 cut(s) 163
MseI TTAA 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 4 cut(s) 71, 186, 256, 288
NlaIII CATG 2 cut(s) 65, 148
PciSI GCTCTTC 1 cut(s) 309
PctI GAATGC 1 cut(s) 203
PkrI GCNGC 4 cut(s) 99, 158, 182, 241
Psp124BI GAGCTC 1 cut(s) 120
PstNI CAGNNNCTG 1 cut(s) 44
PsuI RGATCY 1 cut(s) 288
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 4 cut(s) 98, 157, 181, 240
Sau3AI GATC 4 cut(s) 71, 186, 256, 288
SduI GDGCHC 4 cut(s) 120, 223, 299, 321
SetI ASST 6 cut(s) 99, 120, 141, 177, 211, 267
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 2 cut(s) 7, 90
SsiI CCGC 3 cut(s) 100, 156, 180
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 120
TaaI ACNGT 1 cut(s) 80
TasI AATT 2 cut(s) 7, 90
TauI GCSGC 2 cut(s) 159, 183
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TseI GCWGC 2 cut(s) 97, 239
TspDTI ATGAA 2 cut(s) 66, 261
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.