FvH4_7g17570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005121
Physical Location & Seq
Forward (+)
14891638 .. 14892452
815 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17570.t1

Sequence Viewer

Length: 345 bp
ATGGGAAACTTTGCTGGAAAGGACTACGGCGTGGTGCACCCGGTTGATGAGAATGAAGGAGCAGATAGAACGCCGTCGCCGAACAGTTTGTTGAGAGTTAAGGTGCGTATGACGAAGAGGCAACTCAAGGAGTTGATGGCGCAGGTGGACAAAAACAAACTAGGTCACCGGAACTCTGAGGAGCTAGGCAGCGTGATCCTGCAAGAATGCTTGAAGGGTAGGCTTAGTGCTTGTGTTGTTGCTGCTGCTTCTGAGAGTGATCATAATAAGGGATCCAAATATGAACGGGGTTGGATGTTGAGCACCATTTCTGAGGAAGAAGAAGAACATCAACATCTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.75

Weight (kDa)

6.2

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 133
AclWI GGATC 3 cut(s) 190, 267, 280
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw21I GWGCWC 2 cut(s) 39, 305
Alw44I GTGCAC 1 cut(s) 35
AlwI GGATC 3 cut(s) 190, 267, 280
ApaLI GTGCAC 1 cut(s) 35
ApeKI GCWGC 3 cut(s) 189, 242, 245
AspLEI GCGC 1 cut(s) 142
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 39
BamHI GGATCC 1 cut(s) 272
Bbv12I GWGCWC 2 cut(s) 39, 305
BbvI GCAGC 3 cut(s) 201, 229, 232
BccI CCATC 1 cut(s) 130
BceAI ACGGC 2 cut(s) 43, 58
BclI TGATCA 1 cut(s) 259
BcnI CCSGG 1 cut(s) 41
BfaI CTAG 2 cut(s) 161, 185
BfuAI ACCTGC 1 cut(s) 133
BisI GCNGC 3 cut(s) 190, 243, 246
BlsI GCNGC 3 cut(s) 191, 244, 247
Bme1390I CCNGG 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 168
BseGI GGATG 1 cut(s) 300
BseMII CTCAG 3 cut(s) 168, 243, 303
BseRI GAGGAG 1 cut(s) 194
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 3 cut(s) 201, 229, 232
BsiHKAI GWGCWC 2 cut(s) 39, 305
BsiSI CCGG 2 cut(s) 41, 169
BsmI GAATGC 1 cut(s) 212
Bsp1286I GDGCHC 2 cut(s) 39, 305
Bsp143I GATC 3 cut(s) 195, 259, 272
BspCNI CTCAG 3 cut(s) 169, 244, 304
BspLI GGNNCC 1 cut(s) 274
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 3 cut(s) 190, 267, 280
BssMI GATC 3 cut(s) 195, 259, 272
Bst4CI ACNGT 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 110
BstDEI CTNAG 4 cut(s) 177, 224, 252, 312
BstEII GGTNACC 1 cut(s) 164
BstF5I GGATG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 3 cut(s) 198, 262, 275
BstMBI GATC 3 cut(s) 195, 259, 272
BstPI GGTNACC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 39
BstV1I GCAGC 3 cut(s) 201, 229, 232
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BtsCI GGATG 1 cut(s) 300
BveI ACCTGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 142
CviJI RGCY 2 cut(s) 184, 223
CviKI_1 RGCY 2 cut(s) 184, 223
DdeI CTNAG 4 cut(s) 177, 224, 252, 312
DpnI GATC 3 cut(s) 197, 261, 274
DpnII GATC 3 cut(s) 195, 259, 272
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 164
FaiI YATR 3 cut(s) 110, 264, 282
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 190, 243, 246
FokI GGATG 1 cut(s) 307
Fsp4HI GCNGC 3 cut(s) 190, 243, 246
FspBI CTAG 2 cut(s) 161, 185
GlaI GCGC 1 cut(s) 141
GluI GCNGC 3 cut(s) 190, 243, 246
HapII CCGG 2 cut(s) 41, 169
HhaI GCGC 1 cut(s) 142
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HpaII CCGG 2 cut(s) 41, 169
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 37, 148
Hpy188I TCNGA 3 cut(s) 178, 253, 313
Hpy8I GTNNAC 2 cut(s) 37, 148
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 2 cut(s) 50, 208
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 37, 202
HpyF3I CTNAG 4 cut(s) 177, 224, 252, 312
HspAI GCGC 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 3 cut(s) 195, 259, 272
LmnI GCTCC 2 cut(s) 59, 181
LpnPI CCDG 4 cut(s) 54, 128, 182, 212
Lsp1109I GCAGC 3 cut(s) 201, 229, 232
MaeI CTAG 2 cut(s) 161, 185
MaeIII GTNAC 1 cut(s) 164
MalI GATC 3 cut(s) 197, 261, 274
MboI GATC 3 cut(s) 195, 259, 272
MboII GAAGA 4 cut(s) 127, 329, 332, 335
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 2 cut(s) 39, 305
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 3 cut(s) 111, 172, 307
MseI TTAA 1 cut(s) 99
MspI CCGG 2 cut(s) 41, 169
MspR9I CCNGG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 212
NciI CCSGG 1 cut(s) 41
NdeII GATC 3 cut(s) 195, 259, 272
NlaIV GGNNCC 1 cut(s) 274
NmuCI GTSAC 1 cut(s) 164
PaqCI CACCTGC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PctI GAATGC 1 cut(s) 212
PkrI GCNGC 3 cut(s) 191, 244, 247
PspEI GGTNACC 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 274
PsuI RGATCY 1 cut(s) 272
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 3 cut(s) 190, 243, 246
Sau3AI GATC 3 cut(s) 195, 259, 272
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 2 cut(s) 39, 305
SetI ASST 4 cut(s) 105, 147, 166, 186
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SspMI CTAG 2 cut(s) 161, 185
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 86
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 3 cut(s) 189, 242, 245
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 69, 297
VneI GTGCAC 1 cut(s) 35
XspI CTAG 2 cut(s) 161, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.