Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005121

Physical Location & Seq

Genomic Coordinates Reverse (-)

27880161 .. 27884427

Gene Structure 4267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008260

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGGAATTGGGTTGGGAAGGAAAGGGGTGTTCACCCAGTTGATGAAGATGAAGGACTACATGGAGTTGCATCAAACAGTCTGATGAGAATTAAGGTGCGGATGACTAAAAGAGAGCTCAAGGAGTTGATGGCGCAGGTAGGCATGACCAACGGCGGCGATAACTCGGAGGAGCTAGGCGGCTTGATCCTGAAAGAATGCTTGGAAGGTAGGCTCTGTGCTCGTGTTGTCGCTGTTGCTGCTGATGAAGATAGTGATCCAAAGGAACAGAGCAAGAGAGTTGTGAGCAGCAGGAACAGTGTTGACGCCATAGCTTCCAAAACAGAGCCGACCCAGAAGCTGGTCATCTCAGACGAGTACAAAGCCCCCATCTTTGCTGCAGAACCAAGCTCAGAAGCACAGCCAACAATGCAAAAATCTCAGAGCATCGCAAAAGCTTGTGTTTTGCGTTTTGATTGGATCCAGTTTGTGATGAGACGATTGGGTTTAGAACAAGTAGAACAGATAGCTTACATTGAGTTTAATTTTAGTTATTTTACAATGAGTTTTGCCATTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.7

Weight (kDa)

5.36

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61930
fragaria_vesca	FvH4_7g17570
prunus_persica	Prupe.2G197000_v2.0.a1 Prupe.2G197100_v2.0.a1
rosa_laevigata	RLG00000008260 RLG00000027754 RLG00000027756
rosa_multiflora	Rmu_co8482767.1_g000001 Rmu_sc0000677.1_g000007 Rmu_sc0001238.1_g000046 Rmu_sc0001569.1_g000013 Rmu_sc0029763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00295490 Rroxscaffold_4G00295520 Rroxscaffold_5G00357030
rosa_rugosa	Rorug01G0284300 Rorug01G0284800 Rorug04G0116600
rosa_samantha	Rh1AG296000 Rh1BG260600 Rh1CG277800 Rh1CG277900 Rh1DG290600 Rh4AG175400 Rh4BG175100 Rh4CG186600 Rh4DG172200
rosa_wichuraiana	Rw1G026160 Rw1G026170 Rw4G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccB7I	CCANNNNNTGG	1 cut(s)	340
AciI	CCGC	3 cut(s)	100, 156, 180
AclWI	GGATC	4 cut(s)	181, 251, 454, 467
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	7 cut(s)	118, 175, 314, 340, 390, 437, 509
AluI	AGCT	7 cut(s)	118, 175, 314, 340, 390, 437, 509
Alw21I	GWGCWC	2 cut(s)	120, 223
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	4 cut(s)	181, 251, 454, 467
AlwNI	CAGNNNCTG	1 cut(s)	340
ApeKI	GCWGC	3 cut(s)	239, 288, 377
AspLEI	GCGC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	120
BauI	CACGAG	1 cut(s)	222
Bbv12I	GWGCWC	2 cut(s)	120, 223
BbvI	GCAGC	3 cut(s)	226, 300, 364
BccI	CCATC	2 cut(s)	124, 377
BceAI	ACGGC	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	5 cut(s)	157, 181, 240, 289, 378
BlsI	GCNGC	5 cut(s)	158, 182, 241, 290, 379
BmiI	GGNNCC	1 cut(s)	461
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	2 cut(s)	80, 435
BmuI	ACTGGG	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	38, 463
Bse8I	GATNNNNATC	1 cut(s)	255
BseGI	GGATG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMII	CTCAG	3 cut(s)	363, 405, 434
BseNI	ACTGG	2 cut(s)	38, 463
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	3 cut(s)	226, 300, 364
BsiHKAI	GWGCWC	2 cut(s)	120, 223
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	469
BsmBI	CGTCTC	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	120, 223
Bsp143I	GATC	3 cut(s)	186, 256, 459
BspACI	CCGC	3 cut(s)	100, 156, 180
BspCNI	CTCAG	3 cut(s)	362, 404, 433
BspLI	GGNNCC	1 cut(s)	461
BspMAI	CTGCAG	1 cut(s)	382
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	4 cut(s)	181, 251, 454, 467
BsrI	ACTGG	2 cut(s)	38, 463
BssMI	GATC	3 cut(s)	186, 256, 459
BssNI	GRCGYC	1 cut(s)	306
BssSI	CACGAG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	80, 299
BstACI	GRCGYC	1 cut(s)	306
BstDEI	CTNAG	3 cut(s)	349, 391, 420
BstF5I	GGATG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	3 cut(s)	189, 259, 462
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	3 cut(s)	186, 256, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 409
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	226, 300, 364
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	304
BveI	ACCTGC	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	340
CfoI	GCGC	1 cut(s)	136
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	2 cut(s)	62, 145
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	3 cut(s)	349, 391, 420
DpnI	GATC	3 cut(s)	188, 258, 461
DpnII	GATC	3 cut(s)	186, 256, 459
Ecl136II	GAGCTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	469
FaeI	CATG	2 cut(s)	65, 148
FaiI	YATR	4 cut(s)	63, 146, 311, 559
FatI	CATG	2 cut(s)	61, 144
Fnu4HI	GCNGC	5 cut(s)	157, 181, 240, 289, 378
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	120
Fsp4HI	GCNGC	5 cut(s)	157, 181, 240, 289, 378
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	5 cut(s)	157, 181, 240, 289, 378
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	2 cut(s)	65, 148
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	435
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	34, 304
Hpy188I	TCNGA	5 cut(s)	84, 169, 352, 394, 423
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	2 cut(s)	34, 304
HpyAV	CCTTC	3 cut(s)	13, 47, 200
HpyCH4III	ACNGT	2 cut(s)	80, 299
HpyCH4V	TGCA	3 cut(s)	71, 380, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 409
HpyF3I	CTNAG	3 cut(s)	349, 391, 420
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	2 cut(s)	65, 148
HspAI	GCGC	1 cut(s)	134
Kzo9I	GATC	3 cut(s)	186, 256, 459
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	51, 122, 203, 277, 326, 347, 476
Lsp1109I	GCAGC	3 cut(s)	226, 300, 364
LweI	GCATC	2 cut(s)	80, 435
MaeI	CTAG	1 cut(s)	176
MalI	GATC	3 cut(s)	188, 258, 461
MboI	GATC	3 cut(s)	186, 256, 459
MboII	GAAGA	2 cut(s)	59, 260
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	2 cut(s)	120, 223
MluCI	AATT	3 cut(s)	7, 90, 523
MnlI	CCTC	1 cut(s)	163
MseI	TTAA	2 cut(s)	93, 522
Mva1269I	GAATGC	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	239, 409
NdeII	GATC	3 cut(s)	186, 256, 459
NlaIII	CATG	2 cut(s)	65, 148
NlaIV	GGNNCC	1 cut(s)	461
PctI	GAATGC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	340
PkrI	GCNGC	5 cut(s)	158, 182, 241, 290, 379
Psp124BI	GAGCTC	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	382
PstNI	CAGNNNCTG	1 cut(s)	340
PsuI	RGATCY	1 cut(s)	459
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	93, 522
SatI	GCNGC	5 cut(s)	157, 181, 240, 289, 378
Sau3AI	GATC	3 cut(s)	186, 256, 459
SduI	GDGCHC	2 cut(s)	120, 223
SfaNI	GCATC	2 cut(s)	80, 435
SfcI	CTRYAG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	7, 90, 523
SsiI	CCGC	3 cut(s)	100, 156, 180
SspMI	CTAG	1 cut(s)	176
SstI	GAGCTC	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	80, 299
TasI	AATT	3 cut(s)	7, 90, 523
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	2 cut(s)	159, 183
Tru1I	TTAA	2 cut(s)	93, 522
Tru9I	TTAA	2 cut(s)	93, 522
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	3 cut(s)	239, 288, 377
TspDTI	ATGAA	3 cut(s)	60, 66, 261
TspRI	CASTG	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	340
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.