Rmu_sc0001238.1_g000046

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001238.1
OG0005121
Physical Location & Seq
Forward (+)
217271 .. 217606
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001238.1_g000046.1.cds

Sequence Viewer

Length: 336 bp
atggggaattgggttgggaaggaaaggggtgttcacccagttgatgaagatgaaggactacatggagttggatcaaacagtctgatgagaattaaggtgcggatgactaaaagagagctcaaagagttgatggcgcaggtagacatgaccaacggcggcgataactcggaggagctaggcgacttgatcctgaaagaatgcttggaaggtaggctctgtgctcgtgttgtcgctgttgctgctgatgaagatagtgatccaaaggtatcaaaatatgtgaagggttggatgttgagcaccagttcagaagaagaagagcaccatcatctgttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.36

Weight (kDa)

5.05

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 141
AciI CCGC 2 cut(s) 100, 156
AclWI GGATC 3 cut(s) 79, 181, 251
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 2 cut(s) 118, 175
AluI AGCT 2 cut(s) 118, 175
Alw21I GWGCWC 4 cut(s) 120, 223, 299, 321
AlwI GGATC 3 cut(s) 79, 181, 251
ApeKI GCWGC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 26
BanII GRGCYC 1 cut(s) 120
BauI CACGAG 1 cut(s) 222
Bbv12I GWGCWC 4 cut(s) 120, 223, 299, 321
BbvI GCAGC 1 cut(s) 226
BccI CCATC 2 cut(s) 124, 330
BceAI ACGGC 1 cut(s) 169
BfaI CTAG 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 127
BisI GCNGC 2 cut(s) 157, 240
BlsI GCNGC 2 cut(s) 158, 241
BmrI ACTGGG 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 255
Bse1I ACTGG 2 cut(s) 38, 300
Bse8I GATNNNNATC 1 cut(s) 255
BseGI GGATG 2 cut(s) 108, 294
BseJI GATNNNNATC 1 cut(s) 255
BseNI ACTGG 2 cut(s) 38, 300
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 226
BsiHKAI GWGCWC 4 cut(s) 120, 223, 299, 321
BsmI GAATGC 1 cut(s) 203
Bsp1286I GDGCHC 4 cut(s) 120, 223, 299, 321
Bsp143I GATC 3 cut(s) 71, 186, 256
BspACI CCGC 2 cut(s) 100, 156
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 3 cut(s) 79, 181, 251
BspQI GCTCTTC 1 cut(s) 309
BsrI ACTGG 2 cut(s) 38, 300
BssMI GATC 3 cut(s) 71, 186, 256
BssSI CACGAG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 80
Bst6I CTCTTC 1 cut(s) 309
BstF5I GGATG 2 cut(s) 108, 294
BstHHI GCGC 1 cut(s) 136
BstKTI GATC 3 cut(s) 74, 189, 259
BstMBI GATC 3 cut(s) 71, 186, 256
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 108, 294
BveI ACCTGC 1 cut(s) 127
CfoI GCGC 1 cut(s) 136
CviAII CATG 2 cut(s) 62, 145
CviJI RGCY 3 cut(s) 118, 175, 214
CviKI_1 RGCY 3 cut(s) 118, 175, 214
DpnI GATC 3 cut(s) 73, 188, 258
DpnII GATC 3 cut(s) 71, 186, 256
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 120
FaeI CATG 2 cut(s) 65, 148
FaiI YATR 3 cut(s) 63, 146, 276
FatI CATG 2 cut(s) 61, 144
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 157, 240
FokI GGATG 2 cut(s) 115, 301
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 2 cut(s) 157, 240
FspBI CTAG 1 cut(s) 176
GlaI GCGC 1 cut(s) 135
GluI GCNGC 2 cut(s) 157, 240
HhaI GCGC 1 cut(s) 136
Hin1II CATG 2 cut(s) 65, 148
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 2 cut(s) 34, 142
Hpy188I TCNGA 3 cut(s) 84, 169, 307
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 2 cut(s) 34, 142
HpyAV CCTTC 4 cut(s) 13, 47, 200, 274
HpyCH4III ACNGT 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
Hsp92II CATG 2 cut(s) 65, 148
HspAI GCGC 1 cut(s) 134
Kzo9I GATC 3 cut(s) 71, 186, 256
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 4 cut(s) 51, 122, 203, 313
Lsp1109I GCAGC 1 cut(s) 226
MaeI CTAG 1 cut(s) 176
MalI GATC 3 cut(s) 73, 188, 258
MboI GATC 3 cut(s) 71, 186, 256
MboII GAAGA 5 cut(s) 59, 260, 320, 323, 326
MhlI GDGCHC 4 cut(s) 120, 223, 299, 321
MluCI AATT 2 cut(s) 7, 90
MmeI TCCRAC 2 cut(s) 49, 266
MnlI CCTC 1 cut(s) 163
MseI TTAA 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 3 cut(s) 71, 186, 256
NlaIII CATG 2 cut(s) 65, 148
PciSI GCTCTTC 1 cut(s) 309
PctI GAATGC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 158, 241
Psp124BI GAGCTC 1 cut(s) 120
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 2 cut(s) 157, 240
Sau3AI GATC 3 cut(s) 71, 186, 256
SduI GDGCHC 4 cut(s) 120, 223, 299, 321
SetI ASST 6 cut(s) 99, 120, 141, 177, 211, 267
Sse9I AATT 2 cut(s) 7, 90
SsiI CCGC 2 cut(s) 100, 156
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 120
TaaI ACNGT 1 cut(s) 80
TasI AATT 2 cut(s) 7, 90
TauI GCSGC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 60, 66, 261
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.