AT3G62360

Nodal modulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011945
Physical Location & Seq
Reverse (-)
23072746 .. 23080706
7961 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62360.2

Sequence Viewer

Length: 3684 bp
ATGGCGGCCAGTAGGAAGATTTGTCATTCTCTGATCGTTTTCCTCATAGCGATTTCTACAGTCTACGGTGTTTCCGCGGATTCGATAAAAGGCTGCGGTGGTTTTGTCGAGGCGAGTTCGTCTTTGGTCAGGTCTCGGAAAGGATCCGATGGGAAACTGGATTTTTCTCATATCACAGTTGAGCTTCAAACAGTAGATGGATTGGTAAAAGACAGTACACAGTGTGCCCCAAATGGTTACTATTTCATCCCAGTATATGACAAGGGCTCATTCATTCTCAAGATAAATGGACCTGACGGATGGTCATGGAATCCAGATAAGGTAACTGTTGTTGTTGACGACTCTAGTTGCAACAACAATGATGATATTAACTTCCACTTCACGGGTTTTACATTATCCGGTAAAGTCTTGGGAGCTGTTGGTGGGGAGAGTTGTCTGATTAAGAATGGAGGCCCAGCAGATGTCAATGTTGAATTGTTGTCTTCTGATGGATCAGAAGATCCTGTCGCTTCTGTTCTCACATCGTCAGATGGGAGCTACTTATTCAAGAATATTATTCCAGGAACATACAATATCCGTGCATCCCATCCAGAGCTGCAAGTTGAAGTTCGCGGTTCAACAGAGGTGGAACTTGGATTTGCAAATGGCATGGTTGATGACATATTCTTCGTCCTTGGTTATGATCTTAAGGGGTCGGTTGTTGCTCAGGGGAATCCAATCCTGGGTGTCCATATATATTTGCATTCAGATGATGTTTCCATGGTAGATTGTCCCCAAGGATCTGGTGACGCTGCTGGAGAAAGGAAATCTCTTTGCCATGCTGTATCCGATGCAGAAGGAATTTTCAGTTTCAAGTCCATCCCTTGTGGAAAATACGAATTGGTGCCGCATTATAAGGGTGAGAATACGGTCTTTGATGTTTCACCTCCTGTTATGCCTGTATCTGTAGAGCATCAACATGTCACTGTTCCCCAAAAATTTCAGGTAACAGGATTCTCCATTGGGGGTCGCGTAGTTGACGGTAATTCAGTGGGAGTTGAGGGCGTTAAAATCTTAGTAGATGGTAGTCTAAGATCTGTCACAGACAAGGAAGGCTATTACAAGCTTGACCAGCCTGCTAAATTGGTTGTTACTCAACCTCTCCTAGTGAATTTTTTGAGGCTTCTAGAGTCTAGAGTAAAGAATATGGCTAGATTTCTGAAGGTTACCTCAAACCAGTATACAATTGATGCAGTCAAGGAGCATTACAAGTTCGACAAACTGAAGAAGTTCATGGTTTTACCAAATATGGCTTCACTTCCAGACATCAATGCTGTATCCTATGATATCTGTGGTGTGGTGCGAATGTTTGGTTCTCGTCACAAAGCAAAGGTAGCTTTGACTCATGGACCCACAAATGTCAAACCACAAATGAAGCTAACAGATGAGACCGGAGCTTTCTGCTTTGAGGTTCCACCAGGCGAATATAGGCTGTCTGCTTTGGCTGCTACACCAAAGGGTGCTTCTGAGCTTCTGTTTTTGCCAGCTTATGTTGATGTTGCCGTTAAAAGTCCTTTGTTGAACATAGAATTCTCTCAGGCCAGAGTCAATGTGCATGGTTCTGTTACTTGCAAGGAGAAATGTGGTCCTTCTGTCTCAGTGGTGCTTGTGGGAGCTGCTGGTGATCGTGACAAGAAGACAGTTGTTTTAACCGACGAGAGCAGTCAATTTCTATTTTCAGACATATTGCCTGGAAAATATAGAGTTGAGGTGAAAAGTATTTCACCGGAAGCCGCATCTGATGAAGACAGTTGGTGCTGGGACCGTAGCTCCATTGATGTGAATGTCGGAACTGAGGATATCAAAGGGATTGAATTTGTCCAGAAAGGTTACTGGATTAATATTATCTCCACTCATGAGGTGGACGCTAGAATCGCTCATCCTGATGGATCGCCTACTAGTTTGAAAATCAAGAAAGGTTCACAGAAAATATGCATTGAGTCACCTGGAGGGCATGAGCTTCAGCTTTCTGACTCATGCATGTCCTTTGGGAGCAATTCAATAAAGATAGATGTCTCAAATCCACAGCCTATTCATCTGAAAGCAGAGAAGTACCTCCTCAAAGGTCTGATAAATGTGGAGTCTAGTTCAACTATTGAGTCGGAATTGCAAGAGAATTTCATTGTTGACATTCAAGACAAGAAAGGGAATGTTATCAACACTATTGCTGCCAAACTTGCATCTGATGGAAGTGGCGTTTATGAGTACTACACCTGGGCTAGTCTTGGTGAAAAGATTAGCTTTGTTCCTCAAGATTCTAGGGGTAATGTAGAGAAGAAGATGTTGTTTTACCCTAAAGAGATTCATGCTGTAGTGTCAAAAGATGGATGTCAAGCTTCTGTTTCTCCATTTACTGGTCGGCTTGGTCTTTACATACAAGGATCAGTCTCTCCTCCTCTTCCTGGTGTTAATATTAAGATTTTTGCGGCAAAGGACAGCCTTATTTCTTCACTTAAGAAAGGGGAAATAGCTATTGAAACAAGCACTTTATCAGCTGGTTCATTTGTTGCTGGGCCTTTGTATGACGATATACCATATGCCACTGAAGCTTCAAAGCCTGGCTACCATATTAAAAGGTTAGGACCATATTCCTTCTCCTGCCAGAAGCTTGGTCAGATCTCTGTGCGTGTAAACTCAAAGGACAATGCTGAGACATCAATACCTCCACTGTTGTTATCATTAAGTGGCGATCATGGTTACAGAAATAATTCCATATCTGGCGCTGGTGGACTCTTTGTGTTTGATAGCTTATTCCCTGGAAATTTCTACTTGCGTCCCCTTCTTAAGGAATATTCTTTCAAACCTTCAACACTGGCTATAGAACTGAATTCTGGGGAATCCAGTGAAGCTGTCTTTGAGGCTACTCGTGTTGCCTACAGTGCAATGGGTAGAGTCGCTCTTCTATCGGGCCAGCCACAAGAAGGTGTTGCAATTGAAGCTCGCTCTGACTCCAAAGGATACTATGAGGAGACTACAAGCGATATTAATGGAAATTATCGACTGAGAGGGTTACATCCAGATACAGCATATGTAATTAAAGTGTCGAAGAAAATTGGTTCAGCCAACAATCAAATTGAACGTGCATCTCCAGAGTCGGTTTCTCTTCAGATTGGTTATGAAGATATCAATGGGCTCGACTTTTTGGTATTTGAACAACCAGAAACGACCATATTGACATGCCATGTCGAAGGAAAACAAAACGAAGATCTAAACTCGAATCTGCTAGTGGAGATCAAATCAGCCATTGATAAATCTAAGATAGAGAATGTCTTTCCACTACCACTCTCCAACTTCTTCCAAGTAAAAGGCTTACCCAAAGGTAAGCACCTTGTGCAGCTTAAATCCAGTCGTCCTTTGATCTCCCACAAAGTAGAATCAGAGATTATTGAAGTTGATTTCGAGACCAATGCCCAAATCCATATTGGTCCACTTCGATACAGCATTGTGGCAGATCATCAGAGTCAGGAAGTGACACCTGCAGCTATATTGCCACTGGTTATTGGAGTTTCGGCAATTGCTCTATTCCTCAGCATCCCCAGGTTGAAAGACATCTACCAAGCCACGGTTGGAATTTCGTCTCCCGGGTTCACTACATCTGCCAAGAGAGAACCTCGAAAAGCTGTTGCTAGAAAGAAGACGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CarboxypepD_reg

Protein Analysis

1227

Amino Acids

132.94

Weight (kDa)

5.99

Isoelectric Point (pI)

35.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOMO1-like_1st PF22898 48 - 125 8.6e-33 BOS complex subunit NOMO1-like, first beta sandwich domain
NOMO1-like_2nd PF22904 127 - 221 3.8e-17 BOS complex subunit NOMO1-like, second beta sandwich domain
NOMO_3rd PF23193 264 - 330 5.9e-11 NOMO third transthyretin-like domain
NOMO1-like_2nd PF22904 330 - 392 1.2e-06 BOS complex subunit NOMO1-like, second beta sandwich domain
NOMO_5th PF23194 413 - 494 4.4e-08 NOMO fifth transthyretin-like domain
NOMO_6th PF23196 496 - 574 4.3e-06 NOMO sixth transthyretin-like domain
Ig_NOMO PF23141 595 - 667 4.9e-25 NOMO Ig-like domain
NOMO_8th PF23660 669 - 770 4.5e-32 NOMO eighth prealbumin-like domain
NOMO1-like_9th PF22902 772 - 842 1.2e-11 BOS complex subunit NOMO1-like, beta sandwich domain
CarboxypepD_reg PF13620 946 - 1000 1.2e-06 Carboxypeptidase regulatory-like domain
DUF7152 PF23662 1037 - 1136 1.6e-42 Domain of unknown function (DUF7152)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62360 AT3G62360
fragaria_vesca FvH4_1g27060
malus_domestica MD09G1284300.v1.1 MD17G1277500.v1.1
prunus_persica Prupe.3G010500_v2.0.a1 Prupe.3G010500_v2.0.a1 Prupe.3G010500_v2.0.a1
pyrus_communis pycom17g27510
rosa_chinensis RchiOBHm_Chr3g0487381
rosa_laevigata RLG00000023009
rosa_multiflora Rmu_sc0001955.1_g000004
rosa_roxburghii Rroxscaffold_6G00394840
rosa_rugosa Rorug03G0233600
rosa_samantha Rh3AG281600 Rh3BG317200 Rh3CG315300 Rh3DG313200
rosa_wichuraiana Rw3G024930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 894
AarI CACCTGC 1 cut(s) 3523
Acc36I ACCTGC 1 cut(s) 3523
AccB1I GGYRCC 1 cut(s) 883
AccB7I CCANNNNNTGG 1 cut(s) 2393
AccI GTMKAC 2 cut(s) 63, 1220
AccII CGCG 3 cut(s) 77, 612, 1011
AciI CCGC 8 cut(s) 5, 75, 77, 96, 612, 887, 1773, 2465
AclWI GGATC 7 cut(s) 138, 151, 494, 499, 787, 1936, 2428
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 9 cut(s) 840, 977, 1150, 1568, 1853, 2155, 2800, 2866, 3609
AcuI CTGAAG 5 cut(s) 1220, 1283, 1985, 2604, 3128
AdeI CACNNNGTG 2 cut(s) 224, 3370
AfaI GTAC 3 cut(s) 217, 2093, 2246
AfiI CCNNNNNNNGG 7 cut(s) 382, 722, 2393, 2441, 2824, 2960, 3601
AflII CTTAAG 3 cut(s) 686, 2492, 2822
AflIII ACRYGT 1 cut(s) 958
AhdI GACNNNNNGTC 1 cut(s) 301
AhlI ACTAGT 1 cut(s) 1937
AjuI GAANNNNNNNTTGG 4 cut(s) 1276, 1308, 1486, 1518
Alw26I GTCTC 9 cut(s) 138, 1421, 1639, 2059, 2431, 2684, 3002, 3434, 3621
AlwI GGATC 7 cut(s) 138, 151, 494, 499, 787, 1936, 2428
Ama87I CYCGRG 1 cut(s) 3620
AoxI GGCC 5 cut(s) 6, 451, 1578, 2552, 2947
ApeKI GCWGC 8 cut(s) 93, 595, 791, 1484, 1655, 2207, 3373, 3518
ApoI RAATTY 9 cut(s) 840, 977, 1150, 1568, 1853, 2155, 2800, 2866, 3609
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
AseI ATTAAT 2 cut(s) 1878, 3024
Asp700I GAANNNNTTC 3 cut(s) 1268, 2746, 3677
AspLEI GCGC 1 cut(s) 2762
AspS9I GGNCC 9 cut(s) 290, 452, 1388, 1625, 1801, 2552, 2621, 2947, 3464
AsuC2I CCSGG 2 cut(s) 3621, 3622
AsuHPI GGTGA 8 cut(s) 797, 911, 915, 1673, 1755, 1762, 1974, 2279
AvaI CYCGRG 1 cut(s) 3620
AvaII GGWCC 6 cut(s) 290, 1388, 1625, 1801, 2621, 3464
BaeGI GKGCMC 1 cut(s) 229
BamHI GGATCC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 883
BanII GRGCYC 2 cut(s) 269, 3174
BauI CACGAG 1 cut(s) 2904
BbsI GAAGAC 4 cut(s) 474, 1682, 1791, 3680
BbvCI CCTCAGC 1 cut(s) 3566
BbvI GCAGC 8 cut(s) 80, 582, 778, 1471, 1642, 2194, 3385, 3530
BceAI ACGGC 1 cut(s) 1526
BcgI CGANNNNNNTGC 2 cut(s) 3428, 3462
BciVI GTATCC 3 cut(s) 835, 1327, 2990
BcnI CCSGG 2 cut(s) 3621, 3622
BcoDI GTCTC 9 cut(s) 138, 1421, 1639, 2059, 2431, 2684, 3002, 3434, 3621
BcuI ACTAGT 1 cut(s) 1937
BfmI CTRYAG 6 cut(s) 57, 945, 2349, 2856, 2914, 3516
BfoI RGCGCY 1 cut(s) 2763
BfrI CTTAAG 3 cut(s) 686, 2492, 2822
BfuAI ACCTGC 1 cut(s) 3523
BfuI GTATCC 3 cut(s) 835, 1327, 2990
BglII AGATCT 3 cut(s) 1073, 2655, 3244
BmcAI AGTACT 1 cut(s) 2246
Bme18I GGWCC 6 cut(s) 290, 1388, 1625, 1801, 2621, 3464
BmeRI GACNNNNNGTC 1 cut(s) 301
BmeT110I CYCGRG 1 cut(s) 3620
BmgT120I GGNCC 9 cut(s) 290, 452, 1388, 1625, 1801, 2552, 2621, 2947, 3464
BmiI GGNNCC 5 cut(s) 145, 885, 1390, 1452, 1802
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 8 cut(s) 590, 820, 961, 1219, 1784, 2228, 3131, 3579
BmuI ACTGGG 1 cut(s) 245
BpiI GAAGAC 4 cut(s) 474, 1682, 1791, 3680
BplI GAGNNNNNCTC 2 cut(s) 3634, 3666
BpmI CTGGAG 3 cut(s) 816, 2007, 3111
Bpu10I CCTNAGC 2 cut(s) 705, 3566
BpuEI CTTGAG 2 cut(s) 263, 2274
BpuMI CCSGG 2 cut(s) 3621, 3622
BsaI GGTCTC 3 cut(s) 138, 1421, 3434
BsaWI WCCGGW 3 cut(s) 398, 1430, 1765
BsaXI ACNNNNNCTCC 2 cut(s) 1793, 1823
Bsc4I CCNNNNNNNGG 7 cut(s) 382, 722, 2393, 2441, 2824, 2960, 3601
Bse3DI GCAATG 1 cut(s) 2928
BseGI GGATG 9 cut(s) 246, 305, 581, 586, 858, 1918, 2372, 3052, 3570
BseLI CCNNNNNNNGG 7 cut(s) 382, 722, 2393, 2441, 2824, 2960, 3601
BseMI GCAATG 1 cut(s) 2928
BseMII CTCAG 8 cut(s) 719, 1497, 1589, 1650, 1824, 2679, 3032, 3580
BseRI GAGGAG 4 cut(s) 2087, 2421, 2424, 3020
BseSI GKGCMC 1 cut(s) 229
BseXI GCAGC 8 cut(s) 80, 582, 778, 1471, 1642, 2194, 3385, 3530
BseYI CCCAGC 3 cut(s) 454, 1797, 2549
BsgI GTGCAG 1 cut(s) 3392
Bsh1236I CGCG 3 cut(s) 77, 612, 1011
BshFI GGCC 5 cut(s) 8, 453, 1580, 2554, 2949
BshNI GGYRCC 1 cut(s) 883
BsiHKCI CYCGRG 1 cut(s) 3620
BsiSI CCGG 4 cut(s) 399, 1431, 1766, 3621
BslFI GGGAC 3 cut(s) 756, 1814, 2799
BslI CCNNNNNNNGG 7 cut(s) 382, 722, 2393, 2441, 2824, 2960, 3601
BsmAI GTCTC 9 cut(s) 138, 1421, 1639, 2059, 2431, 2684, 3002, 3434, 3621
BsmBI CGTCTC 1 cut(s) 3621
BsmFI GGGAC 3 cut(s) 756, 1814, 2799
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 5 cut(s) 8, 453, 1580, 2554, 2949
Bso31I GGTCTC 3 cut(s) 138, 1421, 3434
BsoBI CYCGRG 1 cut(s) 3620
Bsp1286I GDGCHC 3 cut(s) 229, 269, 3174
Bsp19I CCATGG 1 cut(s) 759
BspACI CCGC 8 cut(s) 5, 75, 77, 96, 612, 887, 1773, 2465
BspANI GGCC 5 cut(s) 8, 453, 1580, 2554, 2949
BspCNI CTCAG 8 cut(s) 718, 1498, 1588, 1649, 1825, 2680, 3033, 3579
BspFNI CGCG 3 cut(s) 77, 612, 1011
BspHI TCATGA 1 cut(s) 1894
BspLI GGNNCC 5 cut(s) 145, 885, 1390, 1452, 1802
BspMAI CTGCAG 1 cut(s) 3520
BspMI ACCTGC 1 cut(s) 3523
BspPI GGATC 7 cut(s) 138, 151, 494, 499, 787, 1936, 2428
BspQI GCTCTTC 1 cut(s) 2943
BspT107I GGYRCC 1 cut(s) 883
BspTI CTTAAG 3 cut(s) 686, 2492, 2822
BspTNI GGTCTC 3 cut(s) 138, 1421, 3434
BsrDI GCAATG 1 cut(s) 2928
BssNAI GTATAC 1 cut(s) 1221
BssSI CACGAG 1 cut(s) 2904
BssT1I CCWWGG 3 cut(s) 673, 759, 775
Bst1107I GTATAC 1 cut(s) 1221
Bst2BI CACGAG 1 cut(s) 2904
Bst6I CTCTTC 3 cut(s) 2442, 2943, 3147
BstAFI CTTAAG 3 cut(s) 686, 2492, 2822
BstAPI GCANNNNNTGC 1 cut(s) 3370
BstC8I GCNNGC 4 cut(s) 1116, 1524, 2951, 2980
BstDSI CCRYGG 3 cut(s) 75, 759, 3600
BstEII GGTNACC 1 cut(s) 1204
BstENI CCTNNNNNAGG 1 cut(s) 2822
BstF5I GGATG 9 cut(s) 246, 305, 581, 586, 858, 1918, 2372, 3052, 3570
BstFNI CGCG 3 cut(s) 77, 612, 1011
BstH2I RGCGCY 1 cut(s) 2763
BstHHI GCGC 1 cut(s) 2762
BstMAI GTCTC 9 cut(s) 138, 1421, 1639, 2059, 2431, 2684, 3002, 3434, 3621
BstMWI GCNNNNNNNGC 9 cut(s) 1111, 1373, 1484, 1913, 2216, 2585, 2918, 2975, 3370
BstNSI RCATGY 3 cut(s) 962, 2023, 3219
BstPI GGTNACC 1 cut(s) 1204
BstSFI CTRYAG 6 cut(s) 57, 945, 2349, 2856, 2914, 3516
BstSLI GKGCMC 1 cut(s) 229
BstUI CGCG 3 cut(s) 77, 612, 1011
BstV1I GCAGC 8 cut(s) 80, 582, 778, 1471, 1642, 2194, 3385, 3530
BstV2I GAAGAC 4 cut(s) 474, 1682, 1791, 3680
BstX2I RGATCY 6 cut(s) 143, 499, 779, 1073, 2655, 3244
BstXI CCANNNNNNTGG 2 cut(s) 782, 2648
BstYI RGATCY 6 cut(s) 143, 499, 779, 1073, 2655, 3244
BstZ17I GTATAC 1 cut(s) 1221
BsuI GTATCC 3 cut(s) 835, 1327, 2990
BsuRI GGCC 5 cut(s) 8, 453, 1580, 2554, 2949
BtgI CCRYGG 3 cut(s) 75, 759, 3600
BtsCI GGATG 9 cut(s) 246, 305, 581, 586, 858, 1918, 2372, 3052, 3570
BveI ACCTGC 1 cut(s) 3523
Cac8I GCNNGC 4 cut(s) 1116, 1524, 2951, 2980
CciI TCATGA 1 cut(s) 1894
CfoI GCGC 1 cut(s) 2762
Cfr13I GGNCC 9 cut(s) 290, 452, 1388, 1625, 1801, 2552, 2621, 2947, 3464
Cfr42I CCGCGG 1 cut(s) 78
Cfr9I CCCGGG 1 cut(s) 3620
CseI GACGC 3 cut(s) 797, 1913, 2801
Csp6I GTAC 3 cut(s) 216, 2092, 2245
CspCI CAANNNNNGTGG 2 cut(s) 606, 641
CviQI GTAC 3 cut(s) 216, 2092, 2245
DraIII CACNNNGTG 2 cut(s) 224, 3370
DriI GACNNNNNGTC 1 cut(s) 301
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 3 cut(s) 2442, 2943, 3147
Eam1105I GACNNNNNGTC 1 cut(s) 301
EarI CTCTTC 3 cut(s) 2442, 2943, 3147
Eco130I CCWWGG 3 cut(s) 673, 759, 775
Eco24I GRGCYC 2 cut(s) 269, 3174
Eco31I GGTCTC 3 cut(s) 138, 1421, 3434
Eco32I GATATC 3 cut(s) 1327, 1840, 3163
Eco47I GGWCC 6 cut(s) 290, 1388, 1625, 1801, 2621, 3464
Eco57I CTGAAG 5 cut(s) 1220, 1283, 1985, 2604, 3128
Eco88I CYCGRG 1 cut(s) 3620
Eco91I GGTNACC 1 cut(s) 1204
EcoNI CCTNNNNNAGG 1 cut(s) 2822
EcoO65I GGTNACC 1 cut(s) 1204
EcoRI GAATTC 2 cut(s) 1568, 2866
EcoRV GATATC 3 cut(s) 1327, 1840, 3163
EcoT14I CCWWGG 3 cut(s) 673, 759, 775
EcoT22I ATGCAT 2 cut(s) 1976, 2021
EcoT38I GRGCYC 2 cut(s) 269, 3174
ErhI CCWWGG 3 cut(s) 673, 759, 775
Esp3I CGTCTC 1 cut(s) 3621
FalI AAGNNNNNCTT 2 cut(s) 2264, 2296
FaqI GGGAC 3 cut(s) 756, 1814, 2799
FauNDI CATATG 2 cut(s) 2575, 3067
FblI GTMKAC 2 cut(s) 63, 1220
FokI GGATG 9 cut(s) 233, 312, 568, 573, 845, 1905, 2379, 3039, 3557
FriOI GRGCYC 2 cut(s) 269, 3174
GlaI GCGC 1 cut(s) 2761
GsaI CCCAGC 3 cut(s) 458, 1801, 2553
GsuI CTGGAG 3 cut(s) 816, 2007, 3111
HaeII RGCGCY 1 cut(s) 2763
HaeIII GGCC 5 cut(s) 8, 453, 1580, 2554, 2949
HapII CCGG 4 cut(s) 399, 1431, 1766, 3621
HgaI GACGC 3 cut(s) 797, 1913, 2801
HhaI GCGC 1 cut(s) 2762
Hin6I GCGC 1 cut(s) 2760
HinP1I GCGC 1 cut(s) 2760
HincII GTYRAC 3 cut(s) 337, 1018, 2167
HindII GTYRAC 3 cut(s) 337, 1018, 2167
HindIII AAGCTT 4 cut(s) 1103, 2373, 2586, 2645
HpaII CCGG 4 cut(s) 399, 1431, 1766, 3621
HphI GGTGA 8 cut(s) 797, 911, 915, 1673, 1755, 1762, 1974, 2279
Hpy99I CGWCG 1 cut(s) 1697
HpyAV CCTTC 9 cut(s) 830, 1085, 1195, 1638, 2641, 2828, 2853, 2954, 3221
HpyCH4IV ACGT 2 cut(s) 3118, 3677
HpyF10VI GCNNNNNNNGC 9 cut(s) 1111, 1373, 1484, 1913, 2216, 2585, 2918, 2975, 3370
HpySE526I ACGT 2 cut(s) 3118, 3677
HspAI GCGC 1 cut(s) 2760
KspI CCGCGG 1 cut(s) 78
LguI GCTCTTC 1 cut(s) 2943
LmnI GCTCC 7 cut(s) 413, 534, 1240, 1433, 1652, 1814, 2031
Lsp1109I GCAGC 8 cut(s) 80, 582, 778, 1471, 1642, 2194, 3385, 3530
LweI GCATC 8 cut(s) 590, 820, 961, 1219, 1784, 2228, 3131, 3579
MaeII ACGT 2 cut(s) 3118, 3677
MfeI CAATTG 3 cut(s) 1224, 2970, 3552
MflI RGATCY 6 cut(s) 143, 499, 779, 1073, 2655, 3244
MhlI GDGCHC 3 cut(s) 229, 269, 3174
MmeI TCCRAC 4 cut(s) 1807, 2121, 3351, 3586
Mph1103I ATGCAT 2 cut(s) 1976, 2021
MroXI GAANNNNTTC 3 cut(s) 1268, 2746, 3677
MslI CAYNNNNRTG 4 cut(s) 747, 957, 1817, 1923
MspA1I CMGCKG 2 cut(s) 77, 2534
MspCI CTTAAG 3 cut(s) 686, 2492, 2822
MspI CCGG 4 cut(s) 399, 1431, 1766, 3621
MunI CAATTG 3 cut(s) 1224, 2970, 3552
Mva1269I GAATGC 1 cut(s) 742
MvnI CGCG 3 cut(s) 77, 612, 1011
MwoI GCNNNNNNNGC 9 cut(s) 1111, 1373, 1484, 1913, 2216, 2585, 2918, 2975, 3370
NciI CCSGG 2 cut(s) 3621, 3622
NcoI CCATGG 1 cut(s) 759
NdeI CATATG 2 cut(s) 2575, 3067
NlaIV GGNNCC 5 cut(s) 145, 885, 1390, 1452, 1802
NmuCI GTSAC 7 cut(s) 785, 961, 1078, 1358, 1667, 1980, 3508
NsiI ATGCAT 2 cut(s) 1976, 2021
NspI RCATGY 3 cut(s) 962, 2023, 3219
PagI TCATGA 1 cut(s) 1894
PaqCI CACCTGC 1 cut(s) 3523
PciI ACATGT 1 cut(s) 958
PciSI GCTCTTC 1 cut(s) 2943
PctI GAATGC 1 cut(s) 742
PdmI GAANNNNTTC 3 cut(s) 1268, 2746, 3677
PflMI CCANNNNNTGG 1 cut(s) 2393
PfoI TCCNGGA 1 cut(s) 559
PscI ACATGT 1 cut(s) 958
PshBI ATTAAT 2 cut(s) 1878, 3024
PsiI TTATAA 1 cut(s) 894
PspEI GGTNACC 1 cut(s) 1204
PspFI CCCAGC 3 cut(s) 454, 1797, 2549
PspN4I GGNNCC 5 cut(s) 145, 885, 1390, 1452, 1802
PspPI GGNCC 9 cut(s) 290, 452, 1388, 1625, 1801, 2552, 2621, 2947, 3464
PstI CTGCAG 1 cut(s) 3520
PsuI RGATCY 6 cut(s) 143, 499, 779, 1073, 2655, 3244
PvuII CAGCTG 1 cut(s) 2534
RsaI GTAC 3 cut(s) 217, 2093, 2246
RsaNI GTAC 3 cut(s) 216, 2092, 2245
RseI CAYNNNNRTG 4 cut(s) 747, 957, 1817, 1923
SacII CCGCGG 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 2943
Sau96I GGNCC 9 cut(s) 290, 452, 1388, 1625, 1801, 2552, 2621, 2947, 3464
ScaI AGTACT 1 cut(s) 2246
SduI GDGCHC 3 cut(s) 229, 269, 3174
SfaNI GCATC 8 cut(s) 590, 820, 961, 1219, 1784, 2228, 3131, 3579
SfcI CTRYAG 6 cut(s) 57, 945, 2349, 2856, 2914, 3516
Sfr303I CCGCGG 1 cut(s) 78
SgrBI CCGCGG 1 cut(s) 78
SinI GGWCC 6 cut(s) 290, 1388, 1625, 1801, 2621, 3464
SmaI CCCGGG 1 cut(s) 3622
SmiMI CAYNNNNRTG 4 cut(s) 747, 957, 1817, 1923
SmlI CTYRAG 5 cut(s) 278, 686, 2289, 2492, 2822
SmoI CTYRAG 5 cut(s) 278, 686, 2289, 2492, 2822
SpeI ACTAGT 1 cut(s) 1937
SsiI CCGC 8 cut(s) 5, 75, 77, 96, 612, 887, 1773, 2465
SspI AATATT 4 cut(s) 553, 1882, 2452, 2831
StyI CCWWGG 3 cut(s) 673, 759, 775
TaiI ACGT 2 cut(s) 3121, 3680
TatI WGTACW 2 cut(s) 215, 2244
TauI GCSGC 4 cut(s) 8, 889, 1775, 2468
TseFI GTSAC 7 cut(s) 785, 961, 1078, 1358, 1667, 1980, 3508
TseI GCWGC 8 cut(s) 93, 595, 791, 1484, 1655, 2207, 3373, 3518
Tsp45I GTSAC 7 cut(s) 785, 961, 1078, 1358, 1667, 1980, 3508
TspGWI ACGGA 2 cut(s) 312, 566
TspMI CCCGGG 1 cut(s) 3620
Van91I CCANNNNNTGG 1 cut(s) 2393
Vha464I CTTAAG 3 cut(s) 686, 2492, 2822
VpaK11BI GGWCC 6 cut(s) 290, 1388, 1625, 1801, 2621, 3464
VspI ATTAAT 2 cut(s) 1878, 3024
XagI CCTNNNNNAGG 1 cut(s) 2822
XapI RAATTY 9 cut(s) 840, 977, 1150, 1568, 1853, 2155, 2800, 2866, 3609
XbaI TCTAGA 2 cut(s) 1165, 1172
XceI RCATGY 3 cut(s) 962, 2023, 3219
XcmI CCANNNNNNNNNTGG 3 cut(s) 1897, 3458, 3602
XmaI CCCGGG 1 cut(s) 3620
XmiI GTMKAC 2 cut(s) 63, 1220
XmnI GAANNNNTTC 3 cut(s) 1268, 2746, 3677
ZrmI AGTACT 1 cut(s) 2246
Zsp2I ATGCAT 2 cut(s) 1976, 2021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.