Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Reverse (-)

21574533 .. 21580842

Gene Structure 6310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0233600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1812 bp

ATGCTTAGCGTGATACGCGTGCACCTTCCTTCTGATATTCCCATTGTAGGCTGTGAGCTCACGCCTTATGTGCTCTTGCGCCGCCCTGATAAGACCGTCACTACTGACGATGTGCCGGAGTCGGCACCTATTGATGGCCAGTTCTTGAGATACAAGTGGTATCGTATACAAAATGATAAAAAAGTGGCTGTCTGTAGCGTACATCCATCTGAGCAAGCGACATTGCAGTGTCTAGGATGTGTCAAGGCCAAACTACCTGTTTCCAAAAGTTACCATTGTTCACCCAAGTGCTTCTCGGATGCATGGCAGCATCACCGTGTTCTGCATGACCGCGCTGCTAGTGCTGTAAATGAAAATGGAAATGAGGAGGAAGAGGTGTTTGGGCGCTTTAATAGCTCAGGATCTGGTGTTCTCAACACTAGCTTATCTGGTTCTGTGTCAAGCACTAGTTTAACAAATGGTTCCACACCTTTGTATCCTGCTGCTGTTACTCAAAGAAGTGGGGGTGAAACATGGTTTGAAGTGGGACGTTCTAAAACTTATACGCCAACCGCTGATGATATTGGGCATGTTCTGAAGTTTGAGTGTGCTGTAGTTGATGTTGAAACCAAAGTACCTGTGGGACCCCCTAATGCCATATTAACTTCCCGTGTGATTCCAGCACCCTCTCCCAGTCCACGCCGATTGGTTCCTGTCAATGGAGTTGATGTGATGGGAAATATTGATTCAGATGGCCGTATTTCATCTTCTGGAACTTTTACTGTGCTTTCATACAACATTTTGTCTGATGTGTATGCCACTAGTGAATCATACAGTTACTGTCCTTCATGGGCACTTTCTTGGCCGTACCGCAGGCAAAATCTGTTGCGAGAAATTGTAGGCTACCGTGCAGATATTGTTTGTCTTCAGGAGGTTCAAAGTGATCATTTTGATGAATTTTTCGCCCCAGAGCTGGACAAACATGGTTATCAAGCGCTATACAAGAGAAAAACAAATGAGGTTTACAGTGGGAACACCCAAACAATTGACGGCTGTGCAACTTTTTTTCGTAGAGACAGATTTTCACATGTCAAAAAATATGAGGTTGAATTTAATAAGGCTGCCCAGTCTTTGACAGACGCCATGATTCCAACTAATCAGAAGAAAAGTGCGTTAAATCGATTAGTTAAGGATAATGTTGCGCTCATAGTGGTCCTGGAAGCAAAATTTAGCAATCAGGGAGTTGATAATCCAGGGAAACGACAGCTTCTTTGTGTGGCAAACACACATGTAAACGTCCACCAAGATCTGAAGGACGTCAAGCTCTGGCAGGTTCATACTCTCCTGAAAGGATTAGAGAAAATAGCTGCCAGTGCAGATATTCCAATGTTGGTGTGTGGGGATTTTAATTCTGTTCCTGGAAGTGCTCCTCATACACTTCTGGCTATGGGAAAGGTGGATCCGTCACATATTGATTTACAAGTAGATCCTCTTAATATATTGCGCCCTCTCAGCAAGCTGATACATCAGCTTCCACTGGTTAGCGCATATTCATCCTTTGCAAGGTTGGGAGTTGGTCTTGGTTTGGAGCAGCAAAGAAGGAGAATGGACCCCACAACAAATGAACCGTTATTTACAAATTGCACTAGAGATTTTATTGGTACCCTAGATTACATATTTTACACTGCGGACTCTTTAACGGTGGAGTCCTTGTTGGAGCTCTTGGATGAAGAAAGCTTAAGAAAAGATACAGCACTTCCTTCTCCAGAGTGGTCATCAGACCACATTGCACTTCTAGCTGAGTTTCGCTGCAAGCCTAGAATTAGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

603

Amino Acids

67.01

Weight (kDa)

6.63

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C6H2	PF15801	71 - 110	3.2e-06	zf-MYND-like zinc finger, mRNA-binding
Exo_endo_phos	PF03372	256 - 588	2.8e-26	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1299
Acc36I	ACCTGC	1 cut(s)	1300
Acc65I	GGTACC	1 cut(s)	1640
AccB1I	GGYRCC	2 cut(s)	124, 1640
AccI	GTMKAC	1 cut(s)	166
AccII	CGCG	2 cut(s)	18, 333
AciI	CCGC	5 cut(s)	82, 331, 552, 850, 1667
AclWI	GGATC	4 cut(s)	409, 1433, 1446, 1460
AcoI	YGGCCR	3 cut(s)	136, 733, 842
AcsI	RAATTY	3 cut(s)	935, 1088, 1205
AcuI	CTGAAG	3 cut(s)	596, 890, 1310
AcyI	GRCGYC	2 cut(s)	1119, 1296
AfaI	GTAC	4 cut(s)	201, 615, 848, 1642
AfeI	AGCGCT	1 cut(s)	975
AfiI	CCNNNNNNNGG	5 cut(s)	47, 134, 698, 952, 1542
AflII	CTTAAG	1 cut(s)	1717
AflIII	ACRYGT	3 cut(s)	16, 1066, 1267
AgsI	TTSAA	4 cut(s)	521, 605, 917, 1088
AhlI	ACTAGT	2 cut(s)	446, 800
AjnI	CCWGG	3 cut(s)	1194, 1231, 1396
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AleI	CACNNNNGTG	1 cut(s)	286
AloI	GAACNNNNNNTCC	2 cut(s)	393, 425
Alw21I	GWGCWC	5 cut(s)	24, 60, 75, 1408, 1701
Alw26I	GTCTC	1 cut(s)	1047
Alw44I	GTGCAC	1 cut(s)	20
AlwI	GGATC	4 cut(s)	409, 1433, 1446, 1460
AlwNI	CAGNNNCTG	2 cut(s)	404, 819
Aor51HI	AGCGCT	1 cut(s)	975
AoxI	GGCC	4 cut(s)	136, 246, 733, 842
ApaLI	GTGCAC	1 cut(s)	20
ApeKI	GCWGC	7 cut(s)	307, 335, 482, 1100, 1346, 1570, 1788
ApoI	RAATTY	3 cut(s)	935, 1088, 1205
ArsI	GACNNNNNNTTYG	2 cut(s)	1233, 1265
Asp718I	GGTACC	1 cut(s)	1640
AspLEI	GCGC	7 cut(s)	81, 335, 387, 976, 1183, 1485, 1526
AspS9I	GGNCC	3 cut(s)	623, 1192, 1588
AsuHPI	GGTGA	3 cut(s)	273, 305, 518
AvaII	GGWCC	3 cut(s)	623, 1192, 1588
BaeGI	GKGCMC	2 cut(s)	24, 835
BaeI	ACNNNNGTAYC	4 cut(s)	458, 491, 597, 630
BalI	TGGCCA	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	1438
BanI	GGYRCC	2 cut(s)	124, 1640
BanII	GRGCYC	2 cut(s)	60, 1701
BarI	GAAGNNNNNNTAC	2 cut(s)	730, 762
BbsI	GAAGAC	1 cut(s)	896
Bbv12I	GWGCWC	5 cut(s)	24, 60, 75, 1408, 1701
BbvI	GCAGC	7 cut(s)	319, 322, 469, 1087, 1333, 1582, 1775
BccI	CCATC	4 cut(s)	128, 214, 706, 725
BceAI	ACGGC	3 cut(s)	720, 829, 1045
BciT130I	CCWGG	3 cut(s)	1196, 1233, 1398
BciVI	GTATCC	1 cut(s)	486
BclI	TGATCA	1 cut(s)	922
BcoDI	GTCTC	1 cut(s)	1047
BcuI	ACTAGT	2 cut(s)	446, 800
BfaI	CTAG	9 cut(s)	233, 339, 420, 447, 801, 1626, 1646, 1775, 1797
BfmI	CTRYAG	2 cut(s)	193, 591
BfoI	RGCGCY	2 cut(s)	388, 977
BfrI	CTTAAG	1 cut(s)	1717
BfuAI	ACCTGC	1 cut(s)	1300
BfuI	GTATCC	1 cut(s)	486
BglII	AGATCT	1 cut(s)	1285
BisI	GCNGC	8 cut(s)	82, 308, 336, 483, 1101, 1347, 1571, 1789
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	8 cut(s)	83, 309, 337, 484, 1102, 1348, 1572, 1790
Bme1390I	CCNGG	3 cut(s)	1196, 1233, 1398
Bme18I	GGWCC	3 cut(s)	623, 1192, 1588
BmgT120I	GGNCC	3 cut(s)	623, 1192, 1588
BmiI	GGNNCC	8 cut(s)	126, 463, 624, 625, 690, 1440, 1590, 1642
BmrFI	CCNGG	3 cut(s)	1196, 1233, 1398
BmrI	ACTGGG	2 cut(s)	666, 1099
BmsI	GCATC	2 cut(s)	289, 319
BmuI	ACTGGG	2 cut(s)	666, 1099
BpiI	GAAGAC	1 cut(s)	896
BpmI	CTGGAG	1 cut(s)	1728
Bpu10I	CCTNAGC	1 cut(s)	397
Bpu1102I	GCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	1159
BsaHI	GRCGYC	2 cut(s)	1119, 1296
BsaJI	CCNNGG	1 cut(s)	1232
BsaXI	ACNNNNNCTCC	4 cut(s)	693, 723, 1676, 1706
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 134, 698, 952, 1542
Bse1I	ACTGG	5 cut(s)	139, 672, 1105, 1350, 1521
Bse3DI	GCAATG	2 cut(s)	221, 1764
BseBI	CCWGG	3 cut(s)	1196, 1233, 1398
BseCI	ATCGAT	1 cut(s)	1159
BseDI	CCNNGG	1 cut(s)	1232
BseGI	GGATG	5 cut(s)	202, 242, 304, 1532, 1711
BseLI	CCNNNNNNNGG	5 cut(s)	47, 134, 698, 952, 1542
BseMI	GCAATG	2 cut(s)	221, 1764
BseMII	CTCAG	4 cut(s)	201, 411, 1504, 1770
BseNI	ACTGG	5 cut(s)	139, 672, 1105, 1350, 1521
BseRI	GAGGAG	2 cut(s)	380, 1398
BseSI	GKGCMC	2 cut(s)	24, 835
BseXI	GCAGC	7 cut(s)	319, 322, 469, 1087, 1333, 1582, 1775
BsgI	GTGCAG	2 cut(s)	909, 1374
Bsh1236I	CGCG	2 cut(s)	18, 333
BshFI	GGCC	4 cut(s)	138, 248, 735, 844
BshNI	GGYRCC	2 cut(s)	124, 1640
BshVI	ATCGAT	1 cut(s)	1159
BsiHKAI	GWGCWC	5 cut(s)	24, 60, 75, 1408, 1701
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	540, 636
BslI	CCNNNNNNNGG	5 cut(s)	47, 134, 698, 952, 1542
BsmAI	GTCTC	1 cut(s)	1047
BsmFI	GGGAC	2 cut(s)	540, 636
BsnI	GGCC	4 cut(s)	138, 248, 735, 844
Bsp1286I	GDGCHC	6 cut(s)	24, 60, 75, 835, 1408, 1701
Bsp143I	GATC	5 cut(s)	401, 922, 1285, 1438, 1465
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	5 cut(s)	82, 331, 552, 850, 1667
BspANI	GGCC	4 cut(s)	138, 248, 735, 844
BspCNI	CTCAG	4 cut(s)	202, 410, 1503, 1771
BspDI	ATCGAT	1 cut(s)	1159
BspFNI	CGCG	2 cut(s)	18, 333
BspLI	GGNNCC	8 cut(s)	126, 463, 624, 625, 690, 1440, 1590, 1642
BspMI	ACCTGC	1 cut(s)	1300
BspPI	GGATC	4 cut(s)	409, 1433, 1446, 1460
BspT107I	GGYRCC	2 cut(s)	124, 1640
BspTI	CTTAAG	1 cut(s)	1717
BsrDI	GCAATG	2 cut(s)	221, 1764
BsrI	ACTGG	5 cut(s)	139, 672, 1105, 1350, 1521
BssECI	CCNNGG	1 cut(s)	1232
BssMI	GATC	5 cut(s)	401, 922, 1285, 1438, 1465
BssNAI	GTATAC	1 cut(s)	167
BssNI	GRCGYC	2 cut(s)	1119, 1296
Bst1107I	GTATAC	1 cut(s)	167
Bst2UI	CCWGG	3 cut(s)	1196, 1233, 1398
Bst4CI	ACNGT	9 cut(s)	97, 317, 763, 815, 821, 887, 1007, 1608, 1681
Bst6I	CTCTTC	1 cut(s)	366
BstACI	GRCGYC	2 cut(s)	1119, 1296
BstAFI	CTTAAG	1 cut(s)	1717
BstC8I	GCNNGC	5 cut(s)	20, 216, 854, 1496, 1793
BstDEI	CTNAG	5 cut(s)	5, 210, 397, 1490, 1779
BstENI	CCTNNNNNAGG	1 cut(s)	1540
BstF5I	GGATG	5 cut(s)	202, 242, 304, 1532, 1711
BstFNI	CGCG	2 cut(s)	18, 333
BstH2I	RGCGCY	2 cut(s)	388, 977
BstHHI	GCGC	7 cut(s)	81, 335, 387, 976, 1183, 1485, 1526
BstKTI	GATC	5 cut(s)	404, 925, 1288, 1441, 1468
BstMAI	GTCTC	1 cut(s)	1047
BstMBI	GATC	5 cut(s)	401, 922, 1285, 1438, 1465
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 70, 341, 393, 1352, 1491, 1775
BstNI	CCWGG	3 cut(s)	1196, 1233, 1398
BstNSI	RCATGY	3 cut(s)	572, 1070, 1271
BstSCI	CCNGG	3 cut(s)	1194, 1231, 1396
BstSFI	CTRYAG	2 cut(s)	193, 591
BstSLI	GKGCMC	2 cut(s)	24, 835
BstUI	CGCG	2 cut(s)	18, 333
BstV1I	GCAGC	7 cut(s)	319, 322, 469, 1087, 1333, 1582, 1775
BstV2I	GAAGAC	1 cut(s)	896
BstX2I	RGATCY	4 cut(s)	401, 1285, 1438, 1465
BstYI	RGATCY	4 cut(s)	401, 1285, 1438, 1465
BstZ17I	GTATAC	1 cut(s)	167
Bsu15I	ATCGAT	1 cut(s)	1159
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	4 cut(s)	138, 248, 735, 844
BsuTUI	ATCGAT	1 cut(s)	1159
BtsCI	GGATG	5 cut(s)	202, 242, 304, 1532, 1711
BtsI	GCAGTG	2 cut(s)	233, 1662
BtsIMutI	CAGTG	5 cut(s)	233, 1012, 1357, 1514, 1662
BveI	ACCTGC	1 cut(s)	1300
Cac8I	GCNNGC	5 cut(s)	20, 216, 854, 1496, 1793
CaiI	CAGNNNCTG	2 cut(s)	404, 819
CfoI	GCGC	7 cut(s)	81, 335, 387, 976, 1183, 1485, 1526
Cfr13I	GGNCC	3 cut(s)	623, 1192, 1588
ClaI	ATCGAT	1 cut(s)	1159
CseI	GACGC	1 cut(s)	1127
Csp6I	GTAC	4 cut(s)	200, 614, 847, 1641
CspCI	CAANNNNNGTGG	2 cut(s)	666, 701
CviAII	CATG	9 cut(s)	303, 326, 513, 569, 828, 962, 1067, 1123, 1268
CviQI	GTAC	4 cut(s)	200, 614, 847, 1641
DdeI	CTNAG	5 cut(s)	5, 210, 397, 1490, 1779
DpnI	GATC	5 cut(s)	403, 924, 1287, 1440, 1467
DpnII	GATC	5 cut(s)	401, 922, 1285, 1438, 1465
EaeI	YGGCCR	3 cut(s)	136, 733, 842
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Ecl136II	GAGCTC	2 cut(s)	58, 1699
Eco24I	GRGCYC	2 cut(s)	60, 1701
Eco47I	GGWCC	3 cut(s)	623, 1192, 1588
Eco47III	AGCGCT	1 cut(s)	975
Eco53kI	GAGCTC	2 cut(s)	58, 1699
Eco57I	CTGAAG	3 cut(s)	596, 890, 1310
EcoICRI	GAGCTC	2 cut(s)	58, 1699
EcoNI	CCTNNNNNAGG	1 cut(s)	1540
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRII	CCWGG	3 cut(s)	1194, 1231, 1396
EcoT22I	ATGCAT	1 cut(s)	304
EcoT38I	GRGCYC	2 cut(s)	60, 1701
FaeI	CATG	9 cut(s)	306, 329, 516, 572, 831, 965, 1070, 1126, 1271
FaqI	GGGAC	2 cut(s)	540, 636
FatI	CATG	9 cut(s)	302, 325, 512, 568, 827, 961, 1066, 1122, 1267
FbaI	TGATCA	1 cut(s)	922
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	8 cut(s)	82, 308, 336, 483, 1101, 1347, 1571, 1789
FokI	GGATG	5 cut(s)	189, 249, 311, 1519, 1718
FriOI	GRGCYC	2 cut(s)	60, 1701
Fsp4HI	GCNGC	8 cut(s)	82, 308, 336, 483, 1101, 1347, 1571, 1789
FspBI	CTAG	9 cut(s)	233, 339, 420, 447, 801, 1626, 1646, 1775, 1797
GlaI	GCGC	7 cut(s)	80, 334, 386, 975, 1182, 1484, 1525
GluI	GCNGC	8 cut(s)	82, 308, 336, 483, 1101, 1347, 1571, 1789
GsuI	CTGGAG	1 cut(s)	1728
HaeII	RGCGCY	2 cut(s)	388, 977
HaeIII	GGCC	4 cut(s)	138, 248, 735, 844
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	1127
HhaI	GCGC	7 cut(s)	81, 335, 387, 976, 1183, 1485, 1526
Hin1I	GRCGYC	2 cut(s)	1119, 1296
Hin1II	CATG	9 cut(s)	306, 329, 516, 572, 831, 965, 1070, 1126, 1271
Hin6I	GCGC	7 cut(s)	79, 333, 385, 974, 1181, 1483, 1524
HinP1I	GCGC	7 cut(s)	79, 333, 385, 974, 1181, 1483, 1524
HindIII	AAGCTT	1 cut(s)	1714
HinfI	GANTC	7 cut(s)	119, 655, 725, 806, 1126, 1670, 1685
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	3 cut(s)	273, 305, 518
Hpy166II	GTNNAC	7 cut(s)	22, 167, 281, 677, 1003, 1273, 1279
Hpy188I	TCNGA	9 cut(s)	34, 211, 298, 576, 730, 787, 1140, 1290, 1759
Hpy188III	TCNNGA	6 cut(s)	145, 399, 750, 908, 1324, 1745
Hpy8I	GTNNAC	7 cut(s)	22, 167, 281, 677, 1003, 1273, 1279
HpyAV	CCTTC	6 cut(s)	35, 39, 834, 1285, 1572, 1749
HpyCH4III	ACNGT	9 cut(s)	97, 317, 763, 815, 821, 887, 1007, 1608, 1681
HpyCH4IV	ACGT	4 cut(s)	529, 1275, 1296, 1807
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 70, 341, 393, 1352, 1491, 1775
HpyF3I	CTNAG	5 cut(s)	5, 210, 397, 1490, 1779
HpySE526I	ACGT	4 cut(s)	529, 1275, 1296, 1807
Hsp92I	GRCGYC	2 cut(s)	1119, 1296
Hsp92II	CATG	9 cut(s)	306, 329, 516, 572, 831, 965, 1070, 1126, 1271
HspAI	GCGC	7 cut(s)	79, 333, 385, 974, 1181, 1483, 1524
KflI	GGGWCCC	1 cut(s)	623
KpnI	GGTACC	1 cut(s)	1644
Ksp22I	TGATCA	1 cut(s)	922
Kzo9I	GATC	5 cut(s)	401, 922, 1285, 1438, 1465
LmnI	GCTCC	3 cut(s)	1411, 1567, 1696
Lsp1109I	GCAGC	7 cut(s)	319, 322, 469, 1087, 1333, 1582, 1775
LweI	GCATC	2 cut(s)	289, 319
MaeI	CTAG	9 cut(s)	233, 339, 420, 447, 801, 1626, 1646, 1775, 1797
MaeII	ACGT	4 cut(s)	529, 1275, 1296, 1807
MaeIII	GTNAC	5 cut(s)	97, 269, 487, 815, 1443
MalI	GATC	5 cut(s)	403, 924, 1287, 1440, 1467
MboI	GATC	5 cut(s)	401, 922, 1285, 1438, 1465
MboII	GAAGA	5 cut(s)	383, 738, 896, 1153, 1721
MfeI	CAATTG	1 cut(s)	1023
MflI	RGATCY	4 cut(s)	401, 1285, 1438, 1465
MhlI	GDGCHC	6 cut(s)	24, 60, 75, 835, 1408, 1701
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	8 cut(s)	873, 935, 1023, 1088, 1205, 1387, 1618, 1800
MluI	ACGCGT	1 cut(s)	16
MluNI	TGGCCA	1 cut(s)	138
MlyI	GAGTC	3 cut(s)	128, 1664, 1694
MmeI	TCCRAC	2 cut(s)	1154, 1674
Mox20I	TGGCCA	1 cut(s)	138
Mph1103I	ATGCAT	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	138
MslI	CAYNNNNRTG	4 cut(s)	226, 286, 315, 930
Msp20I	TGGCCA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	554
MspCI	CTTAAG	1 cut(s)	1717
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	3 cut(s)	1196, 1233, 1398
MunI	CAATTG	1 cut(s)	1023
MvaI	CCWGG	3 cut(s)	1196, 1233, 1398
MvnI	CGCG	2 cut(s)	18, 333
MwoI	GCNNNNNNNGC	7 cut(s)	15, 70, 341, 393, 1352, 1491, 1775
NdeII	GATC	5 cut(s)	401, 922, 1285, 1438, 1465
NlaIII	CATG	9 cut(s)	306, 329, 516, 572, 831, 965, 1070, 1126, 1271
NlaIV	GGNNCC	8 cut(s)	126, 463, 624, 625, 690, 1440, 1590, 1642
NmuCI	GTSAC	2 cut(s)	97, 1443
NsiI	ATGCAT	1 cut(s)	304
NspI	RCATGY	3 cut(s)	572, 1070, 1271
OliI	CACNNNNGTG	1 cut(s)	286
PciI	ACATGT	2 cut(s)	1066, 1267
PfeI	GAWTC	4 cut(s)	655, 725, 806, 1126
PfoI	TCCNGGA	2 cut(s)	1194, 1396
PkrI	GCNGC	8 cut(s)	83, 309, 337, 484, 1102, 1348, 1572, 1790
PleI	GAGTC	3 cut(s)	127, 1664, 1693
PpsI	GAGTC	3 cut(s)	127, 1664, 1693
PpuMI	RGGWCCY	1 cut(s)	623
PscI	ACATGT	2 cut(s)	1066, 1267
Psp124BI	GAGCTC	2 cut(s)	60, 1701
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	3 cut(s)	1194, 1231, 1396
PspGI	CCWGG	3 cut(s)	1194, 1231, 1396
PspN4I	GGNNCC	8 cut(s)	126, 463, 624, 625, 690, 1440, 1590, 1642
PspPI	GGNCC	3 cut(s)	623, 1192, 1588
PspPPI	RGGWCCY	1 cut(s)	623
PstNI	CAGNNNCTG	2 cut(s)	404, 819
PsuI	RGATCY	4 cut(s)	401, 1285, 1438, 1465
RsaI	GTAC	4 cut(s)	201, 615, 848, 1642
RsaNI	GTAC	4 cut(s)	200, 614, 847, 1641
RseI	CAYNNNNRTG	4 cut(s)	226, 286, 315, 930
SacI	GAGCTC	2 cut(s)	60, 1701
SatI	GCNGC	8 cut(s)	82, 308, 336, 483, 1101, 1347, 1571, 1789
Sau3AI	GATC	5 cut(s)	401, 922, 1285, 1438, 1465
Sau96I	GGNCC	3 cut(s)	623, 1192, 1588
SchI	GAGTC	3 cut(s)	128, 1664, 1694
ScrFI	CCNGG	3 cut(s)	1196, 1233, 1398
SduI	GDGCHC	6 cut(s)	24, 60, 75, 835, 1408, 1701
SfaNI	GCATC	2 cut(s)	289, 319
SfcI	CTRYAG	2 cut(s)	193, 591
SinI	GGWCC	3 cut(s)	623, 1192, 1588
SmiMI	CAYNNNNRTG	4 cut(s)	226, 286, 315, 930
SmlI	CTYRAG	2 cut(s)	145, 1717
SmoI	CTYRAG	2 cut(s)	145, 1717
SpeI	ACTAGT	2 cut(s)	446, 800
Sse9I	AATT	8 cut(s)	873, 935, 1023, 1088, 1205, 1387, 1618, 1800
SsiI	CCGC	5 cut(s)	82, 331, 552, 850, 1667
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	9 cut(s)	233, 339, 420, 447, 801, 1626, 1646, 1775, 1797
SstI	GAGCTC	2 cut(s)	60, 1701
StyD4I	CCNGG	3 cut(s)	1194, 1231, 1396
TaaI	ACNGT	9 cut(s)	97, 317, 763, 815, 821, 887, 1007, 1608, 1681
TaiI	ACGT	4 cut(s)	532, 1278, 1299, 1810
TaqI	TCGA	1 cut(s)	1159
TasI	AATT	8 cut(s)	873, 935, 1023, 1088, 1205, 1387, 1618, 1800
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	4 cut(s)	655, 725, 806, 1126
TscAI	CASTG	5 cut(s)	233, 1012, 1357, 1521, 1669
TseFI	GTSAC	2 cut(s)	97, 1443
TseI	GCWGC	7 cut(s)	307, 335, 482, 1100, 1346, 1570, 1788
Tsp45I	GTSAC	2 cut(s)	97, 1443
TspDTI	ATGAA	9 cut(s)	366, 732, 759, 816, 948, 1304, 1521, 1617, 1722
TspGWI	ACGGA	1 cut(s)	1431
TspRI	CASTG	5 cut(s)	233, 1012, 1357, 1521, 1669
Vha464I	CTTAAG	1 cut(s)	1717
VneI	GTGCAC	1 cut(s)	20
VpaK11BI	GGWCC	3 cut(s)	623, 1192, 1588
XagI	CCTNNNNNAGG	1 cut(s)	1540
XapI	RAATTY	3 cut(s)	935, 1088, 1205
XceI	RCATGY	3 cut(s)	572, 1070, 1271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	9 cut(s)	233, 339, 420, 447, 801, 1626, 1646, 1775, 1797
ZraI	GACGTC	1 cut(s)	1297
Zsp2I	ATGCAT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.