Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Reverse (-)

15682972 .. 15683358

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTTCATAGAGAAACAAAAGACTGCATGTGCTTCAGACTCAGGTTCTGCTAGTATACTAGCTGATGTACAAGGAACTGAAGACAAAGAGCATGCTGTCAATGGAATTATTTCAGACAAGAAAAAAGAGTTACTTTCCTTGATGGGATCAGAACTTGAAGGTACTAGCATGCTCGCAGAAAAGAGTTTGTGGGATGTTAACAGTGGTATAAGTCCTCCAGTGGAAGAGATGGTTCTTTGCCAGGAAAGATATGACCAGAATAAAAAATTCTTCTGCCTTGATGAATCAAGTTCAAGGGTACTCAATACTTCAACCAATTTGCAGTGCAGATCTTGTCCTGTTCTGCTTTTGAAAAATGACAACGGAAGGGGCTTGCATATTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

128

Amino Acids

14.01

Weight (kDa)

5.01

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	55
AclWI	GGATC	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	2 cut(s)	18, 99
AfaI	GTAC	3 cut(s)	69, 163, 300
AgsI	TTSAA	4 cut(s)	158, 294, 312, 352
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
AlwI	GGATC	1 cut(s)	154
AlwNI	CAGNNNCTG	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	87
BccI	CCATC	2 cut(s)	136, 223
BciT130I	CCWGG	1 cut(s)	242
BfaI	CTAG	3 cut(s)	51, 59, 165
BglII	AGATCT	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	346
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	146, 329
BspCNI	CTCAG	1 cut(s)	53
BspPI	GGATC	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	146, 329
BssNAI	GTATAC	1 cut(s)	56
Bst1107I	GTATAC	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	219
BstAUI	TGTACA	1 cut(s)	67
BstC8I	GCNNGC	4 cut(s)	93, 170, 174, 374
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	2 cut(s)	149, 332
BstMBI	GATC	2 cut(s)	146, 329
BstNI	CCWGG	1 cut(s)	242
BstNSI	RCATGY	3 cut(s)	30, 95, 172
BstSCI	CCNGG	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BstZ17I	GTATAC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	3 cut(s)	208, 225, 329
Cac8I	GCNNGC	4 cut(s)	93, 170, 174, 374
CaiI	CAGNNNCTG	1 cut(s)	47
Csp6I	GTAC	3 cut(s)	68, 162, 299
CviAII	CATG	3 cut(s)	27, 92, 169
CviJI	RGCY	2 cut(s)	62, 372
CviKI_1	RGCY	2 cut(s)	62, 372
CviQI	GTAC	3 cut(s)	68, 162, 299
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	2 cut(s)	148, 331
DpnII	GATC	2 cut(s)	146, 329
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco57I	CTGAAG	2 cut(s)	18, 99
EcoRII	CCWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	30, 95, 172
FaiI	YATR	8 cut(s)	8, 28, 56, 93, 170, 209, 252, 378
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	3 cut(s)	26, 91, 168
FblI	GTMKAC	1 cut(s)	55
FokI	GGATG	1 cut(s)	206
FspBI	CTAG	3 cut(s)	51, 59, 165
GsuI	CTGGAG	1 cut(s)	201
Hin1II	CATG	3 cut(s)	30, 95, 172
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	38, 284
HpaI	GTTAAC	1 cut(s)	199
Hpy166II	GTNNAC	2 cut(s)	56, 199
Hpy188I	TCNGA	3 cut(s)	37, 115, 151
Hpy8I	GTNNAC	2 cut(s)	56, 199
HpyAV	CCTTC	2 cut(s)	152, 360
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	4 cut(s)	26, 322, 327, 376
HpyF3I	CTNAG	1 cut(s)	40
Hsp92II	CATG	3 cut(s)	30, 95, 172
KspAI	GTTAAC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	146, 329
LpnPI	CCDG	6 cut(s)	27, 227, 231, 254, 269, 351
MaeI	CTAG	3 cut(s)	51, 59, 165
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	2 cut(s)	148, 331
MboI	GATC	2 cut(s)	146, 329
MboII	GAAGA	3 cut(s)	92, 236, 262
MflI	RGATCY	1 cut(s)	329
MluCI	AATT	3 cut(s)	105, 266, 316
MlyI	GAGTC	1 cut(s)	32
MnlI	CCTC	1 cut(s)	225
MroXI	GAANNNNTTC	1 cut(s)	109
MseI	TTAA	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
NdeII	GATC	2 cut(s)	146, 329
NlaIII	CATG	3 cut(s)	30, 95, 172
NspI	RCATGY	3 cut(s)	30, 95, 172
PaeI	GCATGC	2 cut(s)	95, 172
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	284
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	3 cut(s)	69, 163, 300
RsaNI	GTAC	3 cut(s)	68, 162, 299
SaqAI	TTAA	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	146, 329
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	3 cut(s)	46, 64, 163
SphI	GCATGC	2 cut(s)	95, 172
Sse9I	AATT	3 cut(s)	105, 266, 316
SspMI	CTAG	3 cut(s)	51, 59, 165
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	203
TasI	AATT	3 cut(s)	105, 266, 316
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	3 cut(s)	208, 225, 329
TspDTI	ATGAA	1 cut(s)	297
TspGWI	ACGGA	1 cut(s)	378
TspRI	CASTG	3 cut(s)	208, 225, 329
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	3 cut(s)	30, 95, 172
XmiI	GTMKAC	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	3 cut(s)	51, 59, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.