Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003620.1

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Reverse (-)

15566 .. 17506

Gene Structure 1941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003620.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atggaagagagcggcagcatgattaattttttctcacttgagggccaactcgcgaaattagaagttatgggatcaaaagcatttcaactcctccaaaggacattgtgccctgttacaagaaaggatcatacttgggcattggagagacattcagctgctgaagctccagatgattcccaatctaagactatacttgaaaatgaggaagacattccttctcatgcagtgttgtctcttagagtcaaggatcctcgcatgttcatagagaaacgaaagactgcatgtgcttcagactcaggttctgctagtatactagctgttgaacaaggaactgaagacaaagagcatgctgtcagtggaattatttcagacaagaagaaagagttactttcctcgatggggtcagaactcgaaggtactagcatgctcgcagaaaagaatttgtgggatgttaacagtggtataagtcctccagtggaagagatggttctttgccaggaaagatatgaccagaataaaaaattcttctgccttgatgaatcaagttcaagggtaggattgccatgttttccttcggatttccctgattgcagcgcatatttatgccttaaggaaaatgaaagtgccgcctccaatgttaaagaggaacttcgtcctccagcacaaagacctttgagggttcccattttacccccatggaatagtatccaagtttctttaagggaaggacccaccaaaatgcgaaatgccgaaacttttagactggaaaacggggtcagaagcaattcatcgtctaactcggagtgtgacaattatgatgttacattctgtcctggtaatttgtttgatggttttgtagcacggacatctttttcactgacaaatttcttgaatgaattccaaggctgtaatttacgcctatgtcctcatgtgaccgataagacgactagctttacttggtttatgagggatgaaagcaagcttgggcagggccaaaatgggattaccaaatttagttacaagcacaagttatgctttgtaagggtacttcttcatgcttacaaagaagggttttttgaagagggagcagttgtttgtgcacctcaagtgactgacatctcactctggacaaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

378

Amino Acids

42.36

Weight (kDa)

5.38

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	310
AccII	CGCG	1 cut(s)	53
AciI	CCGC	2 cut(s)	12, 627
AclWI	GGATC	4 cut(s)	79, 132, 242, 255
AcsI	RAATTY	5 cut(s)	439, 521, 883, 896, 1010
AcuI	CTGAAG	3 cut(s)	180, 273, 354
AfaI	GTAC	2 cut(s)	418, 1047
AfiI	CCNNNNNNNGG	1 cut(s)	399
AflII	CTTAAG	1 cut(s)	608
AgsI	TTSAA	6 cut(s)	86, 197, 323, 549, 892, 1079
AjnI	CCWGG	2 cut(s)	495, 832
AjuI	GAANNNNNNNTTGG	2 cut(s)	966, 998
AluBI	AGCT	5 cut(s)	155, 164, 317, 951, 982
AluI	AGCT	5 cut(s)	155, 164, 317, 951, 982
Alw21I	GWGCWC	1 cut(s)	1102
Alw26I	GTCTC	2 cut(s)	139, 237
Alw44I	GTGCAC	1 cut(s)	1098
AlwI	GGATC	4 cut(s)	79, 132, 242, 255
AlwNI	CAGNNNCTG	2 cut(s)	158, 302
AoxI	GGCC	2 cut(s)	43, 991
ApaLI	GTGCAC	1 cut(s)	1098
ApeKI	GCWGC	3 cut(s)	15, 155, 591
ApoI	RAATTY	5 cut(s)	439, 521, 883, 896, 1010
AseI	ATTAAT	1 cut(s)	24
Asp700I	GAANNNNTTC	4 cut(s)	210, 364, 784, 896
AspLEI	GCGC	1 cut(s)	596
AspS9I	GGNCC	3 cut(s)	43, 728, 991
AvaII	GGWCC	1 cut(s)	728
BaeGI	GKGCMC	2 cut(s)	110, 1102
BamHI	GGATCC	1 cut(s)	247
BarI	GAAGNNNNNNTAC	2 cut(s)	1032, 1064
BbsI	GAAGAC	2 cut(s)	213, 342
Bbv12I	GWGCWC	1 cut(s)	1102
BbvI	GCAGC	3 cut(s)	27, 142, 603
BccI	CCATC	3 cut(s)	391, 478, 842
BciT130I	CCWGG	2 cut(s)	497, 834
BciVI	GTATCC	1 cut(s)	716
BcoDI	GTCTC	2 cut(s)	139, 237
BfaI	CTAG	4 cut(s)	306, 314, 420, 948
BfrI	CTTAAG	1 cut(s)	608
BfuI	GTATCC	1 cut(s)	716
BisI	GCNGC	5 cut(s)	13, 16, 156, 592, 627
BlsI	GCNGC	5 cut(s)	14, 17, 157, 593, 628
Bme1390I	CCNGG	2 cut(s)	497, 834
Bme18I	GGWCC	1 cut(s)	728
BmgT120I	GGNCC	3 cut(s)	43, 728, 991
BmiI	GGNNCC	3 cut(s)	249, 681, 730
BmrFI	CCNGG	2 cut(s)	497, 834
BpiI	GAAGAC	2 cut(s)	213, 342
BpmI	CTGGAG	3 cut(s)	150, 456, 642
BpuEI	CTTGAG	2 cut(s)	59, 1089
BsaJI	CCNNGG	2 cut(s)	695, 901
BsaXI	ACNNNNNCTCC	2 cut(s)	1077, 1107
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	2 cut(s)	473, 768
BseBI	CCWGG	2 cut(s)	497, 834
BseDI	CCNNGG	2 cut(s)	695, 901
BseGI	GGATG	2 cut(s)	454, 976
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	2 cut(s)	473, 768
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	2 cut(s)	110, 1102
BseXI	GCAGC	3 cut(s)	27, 142, 603
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	45, 993
BsiHKAI	GWGCWC	1 cut(s)	1102
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	2 cut(s)	139, 237
BsnI	GGCC	2 cut(s)	45, 993
Bsp1286I	GDGCHC	2 cut(s)	110, 1102
Bsp143I	GATC	3 cut(s)	71, 124, 247
Bsp19I	CCATGG	1 cut(s)	695
Bsp68I	TCGCGA	1 cut(s)	53
BspACI	CCGC	2 cut(s)	12, 627
BspANI	GGCC	2 cut(s)	45, 993
BspCNI	CTCAG	1 cut(s)	308
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	3 cut(s)	249, 681, 730
BspPI	GGATC	4 cut(s)	79, 132, 242, 255
BspTI	CTTAAG	1 cut(s)	608
BsrBI	CCGCTC	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	473, 768
BssECI	CCNNGG	2 cut(s)	695, 901
BssMI	GATC	3 cut(s)	71, 124, 247
BssNAI	GTATAC	1 cut(s)	311
BssT1I	CCWWGG	2 cut(s)	695, 901
Bst1107I	GTATAC	1 cut(s)	311
Bst2UI	CCWGG	2 cut(s)	497, 834
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	2 cut(s)	474, 1074
BstAFI	CTTAAG	1 cut(s)	608
BstC8I	GCNNGC	4 cut(s)	348, 425, 429, 980
BstDEI	CTNAG	3 cut(s)	183, 236, 295
BstDSI	CCRYGG	1 cut(s)	695
BstF5I	GGATG	2 cut(s)	454, 976
BstFNI	CGCG	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	3 cut(s)	74, 127, 250
BstMAI	GTCTC	2 cut(s)	139, 237
BstMBI	GATC	3 cut(s)	71, 124, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	2 cut(s)	497, 834
BstNSI	RCATGY	4 cut(s)	259, 285, 350, 427
BstSCI	CCNGG	2 cut(s)	495, 832
BstSLI	GKGCMC	2 cut(s)	110, 1102
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	3 cut(s)	27, 142, 603
BstV2I	GAAGAC	2 cut(s)	213, 342
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BstZ17I	GTATAC	1 cut(s)	311
BsuI	GTATCC	1 cut(s)	716
BsuRI	GGCC	2 cut(s)	45, 993
BtgI	CCRYGG	1 cut(s)	695
BtsCI	GGATG	2 cut(s)	454, 976
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	5 cut(s)	231, 361, 463, 480, 875
BtuMI	TCGCGA	1 cut(s)	53
Cac8I	GCNNGC	4 cut(s)	348, 425, 429, 980
CaiI	CAGNNNCTG	2 cut(s)	158, 302
CfoI	GCGC	1 cut(s)	596
Cfr13I	GGNCC	3 cut(s)	43, 728, 991
Csp6I	GTAC	2 cut(s)	417, 1046
CviJI	RGCY	8 cut(s)	45, 155, 164, 317, 906, 951, 982, 993
CviKI_1	RGCY	8 cut(s)	45, 155, 164, 317, 906, 951, 982, 993
CviQI	GTAC	2 cut(s)	417, 1046
DdeI	CTNAG	3 cut(s)	183, 236, 295
DpnI	GATC	3 cut(s)	73, 126, 249
DpnII	GATC	3 cut(s)	71, 124, 247
Eam1104I	CTCTTC	2 cut(s)	474, 1074
EarI	CTCTTC	2 cut(s)	474, 1074
Eco130I	CCWWGG	2 cut(s)	695, 901
Eco47I	GGWCC	1 cut(s)	728
Eco57I	CTGAAG	3 cut(s)	180, 273, 354
EcoO109I	RGGNCCY	1 cut(s)	728
EcoRI	GAATTC	1 cut(s)	896
EcoRII	CCWGG	2 cut(s)	495, 832
EcoT14I	CCWWGG	2 cut(s)	695, 901
ErhI	CCWWGG	2 cut(s)	695, 901
FalI	AAGNNNNNCTT	6 cut(s)	372, 404, 633, 665, 1019, 1051
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	5 cut(s)	13, 16, 156, 592, 627
FokI	GGATG	2 cut(s)	461, 983
Fsp4HI	GCNGC	5 cut(s)	13, 16, 156, 592, 627
FspBI	CTAG	4 cut(s)	306, 314, 420, 948
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	5 cut(s)	13, 16, 156, 592, 627
GsuI	CTGGAG	3 cut(s)	150, 456, 642
HaeIII	GGCC	2 cut(s)	45, 993
HhaI	GCGC	1 cut(s)	596
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	4 cut(s)	173, 240, 293, 539
HpaI	GTTAAC	1 cut(s)	454
Hpy166II	GTNNAC	3 cut(s)	311, 454, 1100
Hpy188I	TCNGA	6 cut(s)	292, 370, 406, 577, 779, 802
Hpy188III	TCNNGA	4 cut(s)	52, 167, 889, 1126
Hpy8I	GTNNAC	3 cut(s)	311, 454, 1100
HpyAV	CCTTC	5 cut(s)	225, 407, 582, 719, 1061
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4V	TGCA	4 cut(s)	224, 281, 591, 1100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	183, 236, 295
HspAI	GCGC	1 cut(s)	594
KspAI	GTTAAC	1 cut(s)	454
Kzo9I	GATC	3 cut(s)	71, 124, 247
LmnI	GCTCC	2 cut(s)	169, 1085
Lsp1109I	GCAGC	3 cut(s)	27, 142, 603
MaeI	CTAG	4 cut(s)	306, 314, 420, 948
MaeIII	GTNAC	7 cut(s)	112, 384, 806, 820, 931, 1016, 1108
MalI	GATC	3 cut(s)	73, 126, 249
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	3 cut(s)	71, 124, 247
MboII	GAAGA	8 cut(s)	17, 218, 347, 388, 491, 517, 1043, 1091
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	2 cut(s)	110, 1102
MlyI	GAGTC	2 cut(s)	249, 287
MroXI	GAANNNNTTC	4 cut(s)	210, 364, 784, 896
MseI	TTAA	5 cut(s)	24, 453, 609, 639, 719
MslI	CAYNNNNRTG	2 cut(s)	601, 737
MspA1I	CMGCKG	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	608
MspR9I	CCNGG	2 cut(s)	497, 834
MvaI	CCWGG	2 cut(s)	497, 834
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	695
NdeII	GATC	3 cut(s)	71, 124, 247
NlaIV	GGNNCC	3 cut(s)	249, 681, 730
NmuCI	GTSAC	3 cut(s)	806, 931, 1108
NruI	TCGCGA	1 cut(s)	53
NspI	RCATGY	4 cut(s)	259, 285, 350, 427
PaeI	GCATGC	2 cut(s)	350, 427
PdmI	GAANNNNTTC	4 cut(s)	210, 364, 784, 896
PfeI	GAWTC	2 cut(s)	173, 539
PkrI	GCNGC	5 cut(s)	14, 17, 157, 593, 628
PleI	GAGTC	2 cut(s)	248, 287
PpsI	GAGTC	2 cut(s)	248, 287
PpuMI	RGGWCCY	1 cut(s)	728
PshBI	ATTAAT	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	728
Psp6I	CCWGG	2 cut(s)	495, 832
PspGI	CCWGG	2 cut(s)	495, 832
PspN4I	GGNNCC	3 cut(s)	249, 681, 730
PspPI	GGNCC	3 cut(s)	43, 728, 991
PspPPI	RGGWCCY	1 cut(s)	728
PstNI	CAGNNNCTG	2 cut(s)	158, 302
PsuI	RGATCY	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	155
RruI	TCGCGA	1 cut(s)	53
RsaI	GTAC	2 cut(s)	418, 1047
RsaNI	GTAC	2 cut(s)	417, 1046
RseI	CAYNNNNRTG	2 cut(s)	601, 737
SaqAI	TTAA	5 cut(s)	24, 453, 609, 639, 719
SatI	GCNGC	5 cut(s)	13, 16, 156, 592, 627
Sau3AI	GATC	3 cut(s)	71, 124, 247
Sau96I	GGNCC	3 cut(s)	43, 728, 991
SchI	GAGTC	2 cut(s)	249, 287
ScrFI	CCNGG	2 cut(s)	497, 834
SduI	GDGCHC	2 cut(s)	110, 1102
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	2 cut(s)	601, 737
SmlI	CTYRAG	3 cut(s)	38, 608, 1104
SmoI	CTYRAG	3 cut(s)	38, 608, 1104
SphI	GCATGC	2 cut(s)	350, 427
SsiI	CCGC	2 cut(s)	12, 627
SspMI	CTAG	4 cut(s)	306, 314, 420, 948
StyD4I	CCNGG	2 cut(s)	495, 832
StyI	CCWWGG	2 cut(s)	695, 901
TaaI	ACNGT	1 cut(s)	458
TaqI	TCGA	2 cut(s)	395, 411
TaqII	GACCGA	1 cut(s)	950
TauI	GCSGC	2 cut(s)	15, 629
TfiI	GAWTC	2 cut(s)	173, 539
Tru1I	TTAA	5 cut(s)	24, 453, 609, 639, 719
Tru9I	TTAA	5 cut(s)	24, 453, 609, 639, 719
TscAI	CASTG	5 cut(s)	231, 361, 463, 480, 882
TseFI	GTSAC	3 cut(s)	806, 931, 1108
TseI	GCWGC	3 cut(s)	15, 155, 591
Tsp45I	GTSAC	3 cut(s)	806, 931, 1108
TspDTI	ATGAA	7 cut(s)	250, 552, 633, 777, 909, 987, 1043
TspGWI	ACGGA	1 cut(s)	877
TspRI	CASTG	5 cut(s)	231, 361, 463, 480, 882
Vha464I	CTTAAG	1 cut(s)	608
VneI	GTGCAC	1 cut(s)	1098
VpaK11BI	GGWCC	1 cut(s)	728
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	5 cut(s)	439, 521, 883, 896, 1010
XceI	RCATGY	4 cut(s)	259, 285, 350, 427
XmiI	GTMKAC	1 cut(s)	310
XmnI	GAANNNNTTC	4 cut(s)	210, 364, 784, 896
XspI	CTAG	4 cut(s)	306, 314, 420, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.