Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Forward (+)

15273999 .. 15279227

Gene Structure 5229 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCGAAATGCTGAAACTTTTAGACTGGAAAACGGGGTCAGAAGCAATTCATCATCTAGCGTGGAGTGTGACAATTTTGATGTTACATTCTGTCCTGGTAATTTGTTTGATGGTTTTGTAGCACGGACATCTTTTTCACTGACAAATTTCTCGAATGATTTCCAAGGCTGTAATTTACGCCTATGTCCTCATGTGACCGATAAGACGACTAGCTTTACTAGGATTATGAGGGATGAAAGCAAGCTTGGGCAGGGCCAAAATGGGATTGCCAAATTTAGTTACAACCACAAATCAGAGAGTTTTGATGCAGGACTTCAAGTTCCTCAATCTGCTGTGACATCGTATTTCAAAGAGCAATCTTTTGGTAAGTGGGAACTCCAATTACCAGAGGACACTGTCAGTAGAGAATCTCATCGTTGGCCTATAGGCTTTGTGACCACTGGTTTTGTTCGAGGGAGTATAAGTAATCTTATTATTTCTACGGTGTGCAACTTCGATCCCGATGACCATAAGAGAGCCCTTGTAATTGGAGGAGGAATTGCTAACTTCACTAATGTAGCTGCAACATTCAATGGCATTATTAGAGCCTTGAAGGAGAAGGTGATGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

203

Amino Acids

22.53

Weight (kDa)

6.89

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Citrate_bind	PF16114	157 - 200	7.1e-12	ATP citrate lyase citrate-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	491
AcsI	RAATTY	2 cut(s)	145, 272
AgsI	TTSAA	4 cut(s)	317, 349, 571, 592
AjnI	CCWGG	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	4 cut(s)	213, 244, 560, 609
AluI	AGCT	4 cut(s)	213, 244, 560, 609
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	2 cut(s)	253, 419
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	2 cut(s)	145, 272
Asp700I	GAANNNNTTC	2 cut(s)	46, 158
AspS9I	GGNCC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	520
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	96
BfaI	CTAG	3 cut(s)	57, 210, 219
BfmI	CTRYAG	1 cut(s)	423
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bse1I	ACTGG	2 cut(s)	30, 445
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	238
BseNI	ACTGG	2 cut(s)	30, 445
BseRI	GAGGAG	1 cut(s)	546
BseXI	GCAGC	1 cut(s)	547
BshFI	GGCC	2 cut(s)	255, 421
BsnI	GGCC	2 cut(s)	255, 421
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	1 cut(s)	496
BspANI	GGCC	2 cut(s)	255, 421
BspPI	GGATC	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	30, 445
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	496
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	397, 484
BstC8I	GCNNGC	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	499
BstMBI	GATC	1 cut(s)	496
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	255, 421
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	3 cut(s)	137, 393, 438
Cac8I	GCNNGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	253
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	1 cut(s)	191
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	520
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	1 cut(s)	194
FaiI	YATR	6 cut(s)	184, 192, 227, 425, 461, 510
FatI	CATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	3 cut(s)	57, 210, 219
GluI	GCNGC	1 cut(s)	561
HaeIII	GGCC	2 cut(s)	255, 421
Hin1II	CATG	1 cut(s)	194
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	407
Hpy188I	TCNGA	2 cut(s)	41, 295
Hpy188III	TCNNGA	2 cut(s)	151, 500
HpyAV	CCTTC	2 cut(s)	586, 592
HpyCH4III	ACNGT	2 cut(s)	397, 484
HpyCH4V	TGCA	3 cut(s)	308, 489, 563
Hsp92II	CATG	1 cut(s)	194
Kzo9I	GATC	1 cut(s)	496
LpnPI	CCDG	7 cut(s)	11, 81, 108, 236, 294, 399, 426
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	3 cut(s)	57, 210, 219
MaeIII	GTNAC	6 cut(s)	68, 82, 193, 278, 334, 433
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	9 cut(s)	46, 73, 100, 145, 172, 272, 380, 525, 537
MnlI	CCTC	7 cut(s)	198, 222, 333, 382, 446, 524, 527
MroXI	GAANNNNTTC	2 cut(s)	46, 158
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	1 cut(s)	194
NmuCI	GTSAC	4 cut(s)	68, 193, 334, 433
PdmI	GAANNNNTTC	2 cut(s)	46, 158
PfeI	GAWTC	1 cut(s)	407
PflFI	GACNNNGTC	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	562
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	253
PsrI	GAACNNNNNNTAC	2 cut(s)	366, 398
PsyI	GACNNNGTC	1 cut(s)	395
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	1 cut(s)	253
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	5 cut(s)	215, 246, 562, 603, 611
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	423
Sse9I	AATT	9 cut(s)	46, 73, 100, 145, 172, 272, 380, 525, 537
SspMI	CTAG	3 cut(s)	57, 210, 219
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	397, 484
TaqI	TCGA	3 cut(s)	152, 451, 495
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	9 cut(s)	46, 73, 100, 145, 172, 272, 380, 525, 537
TfiI	GAWTC	1 cut(s)	407
TscAI	CASTG	3 cut(s)	144, 400, 445
TseFI	GTSAC	4 cut(s)	68, 193, 334, 433
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	4 cut(s)	68, 193, 334, 433
TspDTI	ATGAA	2 cut(s)	39, 249
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	3 cut(s)	144, 400, 445
Tth111I	GACNNNGTC	1 cut(s)	395
XapI	RAATTY	2 cut(s)	145, 272
XmnI	GAANNNNTTC	2 cut(s)	46, 158
XspI	CTAG	3 cut(s)	57, 210, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.