Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009101.1

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Reverse (-)

37863 .. 39243

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009101.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgtgcacaggagccgcctccaatgttaaagaggaacttcgtcctccagcacaaagacctttgagggttcccattttacccccatggaatagtattcaagtttctttaagggaaggacccgccaaaatgcgaaatgctgaaacttttagactggaaaacggggtcagaagcaattcatcatctagcgtggagtgtgacaattttgatgttacattctgtcctggtaatttgtttgatggttttgtagcacggatatctttttcactgacaaatttcttgaatgaattccaaggctgtaatttacgcctatgtcctcatgtgaccgataagacgactagctttattaggtttatgagggatgaaagcaagcttgggcagggccaaaatgggatgaccaaatttagtcacaaccacaagttatgctttgtaagggtatttctccatgcttacaaagaaggatcagagagttttgatgcaggacttcaagttcctcaatctgctgtgacatcgtatttcaaagagcaatcttctggtaagtgggaactccaattaccagaggacactgtcagtagagaatctcatcgttggcctataggctttgtgaccactggttttgttcgagggagcaagaagacagtggcacaagctttttgtgaggcagtactacttgctcatattagaggggaacaatgggatatgatgccagttaaacggagacggaaggaaatatatgttctcgtgaggaatttgagatcctcagcatatagactagctcttgccactatcgtcctggaagatcaggaagaagacgttgaatttctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

274

Amino Acids

31.15

Weight (kDa)

8.68

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	15, 120
AclWI	GGATC	2 cut(s)	466, 747
AcsI	RAATTY	5 cut(s)	271, 284, 398, 745, 815
AfaI	GTAC	1 cut(s)	663
AgsI	TTSAA	5 cut(s)	98, 280, 485, 517, 815
AjnI	CCWGG	2 cut(s)	220, 789
AjuI	GAANNNNNNNTTGG	2 cut(s)	354, 386
AloI	GAACNNNNNNTCC	2 cut(s)	471, 503
AluBI	AGCT	4 cut(s)	339, 370, 647, 773
AluI	AGCT	4 cut(s)	339, 370, 647, 773
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	709
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	2 cut(s)	466, 747
AoxI	GGCC	2 cut(s)	379, 587
ApaLI	GTGCAC	1 cut(s)	4
ApoI	RAATTY	5 cut(s)	271, 284, 398, 745, 815
Asp700I	GAANNNNTTC	2 cut(s)	172, 284
AspS9I	GGNCC	2 cut(s)	116, 379
AvaII	GGWCC	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	737
BbsI	GAAGAC	2 cut(s)	638, 813
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	757
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	2 cut(s)	222, 791
BcoDI	GTCTC	1 cut(s)	709
BfaI	CTAG	3 cut(s)	183, 336, 770
BfmI	CTRYAG	1 cut(s)	591
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmcAI	AGTACT	1 cut(s)	663
Bme1390I	CCNGG	2 cut(s)	222, 791
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	116, 379
BmiI	GGNNCC	3 cut(s)	13, 69, 118
BmrFI	CCNGG	2 cut(s)	222, 791
BmsI	GCATC	2 cut(s)	463, 690
BpiI	GAAGAC	2 cut(s)	638, 813
BpmI	CTGGAG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	757
BsaJI	CCNNGG	2 cut(s)	83, 289
Bse1I	ACTGG	3 cut(s)	156, 613, 704
BseBI	CCWGG	2 cut(s)	222, 791
BseDI	CCNNGG	2 cut(s)	83, 289
BseGI	GGATG	2 cut(s)	364, 396
BseMII	CTCAG	1 cut(s)	771
BseNI	ACTGG	3 cut(s)	156, 613, 704
BseSI	GKGCMC	1 cut(s)	8
BshFI	GGCC	2 cut(s)	381, 589
BsiHKAI	GWGCWC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	709
BsmBI	CGTCTC	1 cut(s)	709
BsnI	GGCC	2 cut(s)	381, 589
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	458, 752, 796
Bsp19I	CCATGG	1 cut(s)	83
BspACI	CCGC	2 cut(s)	15, 120
BspANI	GGCC	2 cut(s)	381, 589
BspCNI	CTCAG	1 cut(s)	770
BspLI	GGNNCC	3 cut(s)	13, 69, 118
BspPI	GGATC	2 cut(s)	466, 747
BsrI	ACTGG	3 cut(s)	156, 613, 704
BssECI	CCNNGG	2 cut(s)	83, 289
BssMI	GATC	3 cut(s)	458, 752, 796
BssSI	CACGAG	1 cut(s)	737
BssT1I	CCWWGG	2 cut(s)	83, 289
Bst2BI	CACGAG	1 cut(s)	737
Bst2UI	CCWGG	2 cut(s)	222, 791
Bst4CI	ACNGT	2 cut(s)	565, 637
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	757
BstDSI	CCRYGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	364, 396
BstKTI	GATC	3 cut(s)	461, 755, 799
BstMAI	GTCTC	1 cut(s)	709
BstMBI	GATC	3 cut(s)	458, 752, 796
BstNI	CCWGG	2 cut(s)	222, 791
BstSCI	CCNGG	2 cut(s)	220, 789
BstSFI	CTRYAG	1 cut(s)	591
BstSLI	GKGCMC	1 cut(s)	8
BstV2I	GAAGAC	2 cut(s)	638, 813
BstX2I	RGATCY	1 cut(s)	752
BstYI	RGATCY	1 cut(s)	752
BsuRI	GGCC	2 cut(s)	381, 589
BtgI	CCRYGG	1 cut(s)	83
BtsCI	GGATG	2 cut(s)	364, 396
BtsIMutI	CAGTG	4 cut(s)	263, 561, 606, 642
Cac8I	GCNNGC	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	116, 379
Csp6I	GTAC	1 cut(s)	662
CspCI	CAANNNNNGTGG	2 cut(s)	595, 630
CviAII	CATG	3 cut(s)	84, 317, 443
CviJI	RGCY	9 cut(s)	14, 294, 339, 370, 381, 589, 597, 647, 773
CviKI_1	RGCY	9 cut(s)	14, 294, 339, 370, 381, 589, 597, 647, 773
CviQI	GTAC	1 cut(s)	662
DdeI	CTNAG	1 cut(s)	757
DpnI	GATC	3 cut(s)	460, 754, 798
DpnII	GATC	3 cut(s)	458, 752, 796
Eco130I	CCWWGG	2 cut(s)	83, 289
Eco32I	GATATC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	220, 789
EcoRV	GATATC	1 cut(s)	255
EcoT14I	CCWWGG	2 cut(s)	83, 289
ErhI	CCWWGG	2 cut(s)	83, 289
Esp3I	CGTCTC	1 cut(s)	709
FaeI	CATG	3 cut(s)	87, 320, 446
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 407, 439
FatI	CATG	3 cut(s)	83, 316, 442
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	371, 403
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	3 cut(s)	183, 336, 770
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	381, 589
Hin1II	CATG	3 cut(s)	87, 320, 446
HindIII	AAGCTT	2 cut(s)	368, 645
HinfI	GANTC	1 cut(s)	575
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	167, 463
Hpy188III	TCNNGA	3 cut(s)	277, 739, 800
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	3 cut(s)	107, 449, 715
HpyCH4III	ACNGT	2 cut(s)	565, 637
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	2 cut(s)	6, 476
HpyF3I	CTNAG	1 cut(s)	757
HpySE526I	ACGT	1 cut(s)	810
Hsp92II	CATG	3 cut(s)	87, 320, 446
Kzo9I	GATC	3 cut(s)	458, 752, 796
LmnI	GCTCC	2 cut(s)	11, 624
LweI	GCATC	2 cut(s)	463, 690
MaeI	CTAG	3 cut(s)	183, 336, 770
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	6 cut(s)	194, 208, 319, 404, 502, 601
MalI	GATC	3 cut(s)	460, 754, 798
MboI	GATC	3 cut(s)	458, 752, 796
MboII	GAAGA	5 cut(s)	519, 643, 806, 815, 818
MflI	RGATCY	1 cut(s)	752
MhlI	GDGCHC	1 cut(s)	8
MroXI	GAANNNNTTC	2 cut(s)	172, 284
MseI	TTAA	3 cut(s)	27, 107, 708
MspR9I	CCNGG	2 cut(s)	222, 791
MvaI	CCWGG	2 cut(s)	222, 791
NcoI	CCATGG	1 cut(s)	83
NdeII	GATC	3 cut(s)	458, 752, 796
NlaIII	CATG	3 cut(s)	87, 320, 446
NlaIV	GGNNCC	3 cut(s)	13, 69, 118
NmuCI	GTSAC	5 cut(s)	194, 319, 404, 502, 601
PdmI	GAANNNNTTC	2 cut(s)	172, 284
PfeI	GAWTC	1 cut(s)	575
PflFI	GACNNNGTC	1 cut(s)	563
PfoI	TCCNGGA	1 cut(s)	789
PkrI	GCNGC	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	220, 789
PspGI	CCWGG	2 cut(s)	220, 789
PspN4I	GGNNCC	3 cut(s)	13, 69, 118
PspPI	GGNCC	2 cut(s)	116, 379
PspPPI	RGGWCCY	1 cut(s)	116
PsrI	GAACNNNNNNTAC	2 cut(s)	534, 566
PsuI	RGATCY	1 cut(s)	752
PsyI	GACNNNGTC	1 cut(s)	563
RsaI	GTAC	1 cut(s)	663
RsaNI	GTAC	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	27, 107, 708
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	458, 752, 796
Sau96I	GGNCC	2 cut(s)	116, 379
ScaI	AGTACT	1 cut(s)	663
ScrFI	CCNGG	2 cut(s)	222, 791
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	61, 341, 350, 372, 649, 775, 813
SfaNI	GCATC	2 cut(s)	463, 690
SfcI	CTRYAG	1 cut(s)	591
SinI	GGWCC	1 cut(s)	116
SsiI	CCGC	2 cut(s)	15, 120
SspMI	CTAG	3 cut(s)	183, 336, 770
StyD4I	CCNGG	2 cut(s)	220, 789
StyI	CCWWGG	2 cut(s)	83, 289
TaaI	ACNGT	2 cut(s)	565, 637
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	1 cut(s)	619
TaqII	GACCGA	1 cut(s)	338
TatI	WGTACW	1 cut(s)	661
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	3 cut(s)	27, 107, 708
Tru9I	TTAA	3 cut(s)	27, 107, 708
TscAI	CASTG	4 cut(s)	270, 568, 613, 642
TseFI	GTSAC	5 cut(s)	194, 319, 404, 502, 601
Tsp45I	GTSAC	5 cut(s)	194, 319, 404, 502, 601
TspDTI	ATGAA	3 cut(s)	165, 297, 375
TspGWI	ACGGA	3 cut(s)	265, 727, 733
TspRI	CASTG	4 cut(s)	270, 568, 613, 642
Tth111I	GACNNNGTC	1 cut(s)	563
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	5 cut(s)	271, 284, 398, 745, 815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XmnI	GAANNNNTTC	2 cut(s)	172, 284
XspI	CTAG	3 cut(s)	183, 336, 770
ZrmI	AGTACT	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.