Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Reverse (-)

33666959 .. 33668228

Gene Structure 1270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1275500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAGGGTCGAAATCAAGCTTGGTCCGGGCCAAGATCAGTTTACTAGATTTAAGTACAATCATAAACTATGTTTTGTTGGAGTATTACTCCATGCTTACAAGGAAGGTTTTCTTGAAGAGGGAGCTCCTCGACTGACGGACATATCACTGTGGACTAGGTCAGAGAGTTTCGATGGAGGACTTCAAATGCCTCAATCTGCTGTGGCTTCGTACTTCACAGAGCAATCTTCTGGTAAGTGGGAACTCCAAATGCCAGAGGACCCTGTTCTTAGAGAAACTTATCGTTCGCCAATGGGCTTCGTCACCACTGGTTTTGTTAGAGGGATGTTAGTTCACAGCCTCTTGCCACTTTACAACGACCATCTTTTCTTTCTATTTTGCTATGCCAAGAAGCCAGTAGCAGAAGCTTTTTGCGAGGCAGTTGTACTCGCTCGTCTCAGAGAGGAACAATGGGATTTGGTGCCAGCTAAGCGAAGACGAAAGGAAATATATGTTCTAGTCAGGAATTTGAGATCTTCAGCTTATAGACTTGCTCTTGCCACCATTGTTCTGGAGCATCAGGAAGAAGATGTCGAATCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

195

Amino Acids

22.44

Weight (kDa)

6.53

Isoelectric Point (pI)

64.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	3 cut(s)	56, 212, 426
AgsI	TTSAA	2 cut(s)	116, 185
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	5 cut(s)	19, 125, 407, 467, 521
AluI	AGCT	5 cut(s)	19, 125, 407, 467, 521
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	440
AoxI	GGCC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	108
AspS9I	GGNCC	3 cut(s)	23, 28, 259
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	2 cut(s)	23, 259
BanI	GGYRCC	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	481
Bbv12I	GWGCWC	1 cut(s)	127
BccI	CCATC	2 cut(s)	167, 369
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	3 cut(s)	45, 156, 497
BglII	AGATCT	1 cut(s)	512
BlpI	GCTNAGC	1 cut(s)	468
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	2 cut(s)	23, 259
BmgT120I	GGNCC	3 cut(s)	23, 28, 259
BmiI	GGNNCC	2 cut(s)	261, 462
BmrFI	CCNGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	565
BpiI	GAAGAC	1 cut(s)	481
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
BpmI	CTGGAG	1 cut(s)	572
Bpu1102I	GCTNAGC	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	27
Bse1I	ACTGG	2 cut(s)	313, 395
BseGI	GGATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	451
BseNI	ACTGG	2 cut(s)	313, 395
BseRI	GAGGAG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	440
BsmBI	CGTCTC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	34, 512
Bsp1720I	GCTNAGC	1 cut(s)	468
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	450
BspLI	GGNNCC	2 cut(s)	261, 462
BspT107I	GGYRCC	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	313, 395
BssMI	GATC	2 cut(s)	34, 512
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	3 cut(s)	269, 437, 468
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	2 cut(s)	37, 515
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	2 cut(s)	34, 512
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	512
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	512
BsuRI	GGCC	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	146, 306
Cac8I	GCNNGC	1 cut(s)	465
Cfr13I	GGNCC	3 cut(s)	23, 28, 259
Csp6I	GTAC	3 cut(s)	55, 211, 425
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	1 cut(s)	92
CviQI	GTAC	3 cut(s)	55, 211, 425
DdeI	CTNAG	3 cut(s)	269, 437, 468
DpnI	GATC	2 cut(s)	36, 514
DpnII	GATC	2 cut(s)	34, 512
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Ecl136II	GAGCTC	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	127
Eco47I	GGWCC	2 cut(s)	23, 259
Eco53kI	GAGCTC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	501
EcoICRI	GAGCTC	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	440
FaeI	CATG	1 cut(s)	95
FaiI	YATR	8 cut(s)	63, 70, 93, 143, 384, 490, 492, 525
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	1 cut(s)	91
FokI	GGATG	1 cut(s)	337
FriOI	GRGCYC	1 cut(s)	127
FspBI	CTAG	3 cut(s)	45, 156, 497
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	1 cut(s)	95
HindIII	AAGCTT	2 cut(s)	17, 405
HinfI	GANTC	1 cut(s)	575
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	3 cut(s)	42, 153, 334
Hpy188I	TCNGA	2 cut(s)	163, 440
Hpy188III	TCNNGA	4 cut(s)	113, 502, 551, 560
Hpy8I	GTNNAC	3 cut(s)	42, 153, 334
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	3 cut(s)	269, 437, 468
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	34, 512
LmnI	GCTCC	3 cut(s)	122, 130, 553
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	3 cut(s)	45, 156, 497
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	36, 514
MboI	GATC	2 cut(s)	34, 512
MboII	GAAGA	6 cut(s)	128, 219, 486, 507, 575, 578
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	1 cut(s)	505
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	9 cut(s)	112, 138, 170, 201, 250, 314, 350, 409, 436
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	1 cut(s)	51
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	469
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	2 cut(s)	34, 512
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	2 cut(s)	261, 462
NmuCI	GTSAC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	575
PflFI	GACNNNGTC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	127
Psp5II	RGGWCCY	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	261, 462
PspPI	GGNCC	3 cut(s)	23, 28, 259
PspPPI	RGGWCCY	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	512
PsyI	GACNNNGTC	1 cut(s)	157
RsaI	GTAC	3 cut(s)	56, 212, 426
RsaNI	GTAC	3 cut(s)	55, 211, 425
SacI	GAGCTC	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	34, 512
Sau96I	GGNCC	3 cut(s)	23, 28, 259
ScrFI	CCNGG	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	7 cut(s)	21, 109, 127, 161, 409, 469, 523
SfaNI	GCATC	1 cut(s)	565
SinI	GGWCC	2 cut(s)	23, 259
Sse9I	AATT	1 cut(s)	505
SspMI	CTAG	3 cut(s)	45, 156, 497
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	150
TaqI	TCGA	4 cut(s)	9, 130, 171, 573
TasI	AATT	1 cut(s)	505
TatI	WGTACW	2 cut(s)	54, 424
TfiI	GAWTC	1 cut(s)	575
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	2 cut(s)	153, 313
TseFI	GTSAC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	301
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	153, 313
Tth111I	GACNNNGTC	1 cut(s)	157
VpaK11BI	GGWCC	2 cut(s)	23, 259
XapI	RAATTY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	3 cut(s)	45, 156, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.