Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Reverse (-)

33669274 .. 33671193

Gene Structure 1920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1275700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAACCTTGAAAAGGGTTTCTGCACATCAGGGGATGGTACAAAGAGGCTTAGAACACATGTTTGGCATGCGAAGCGGTTCGCAATGACAGAGCTTTGGGGTTACTACCTTCCCTTGGGTTTGCAGGGCAGAGGAAGGGGGTCCAGAGCTGTCTTGAAGTGGTTCAGGGATGGAGTGCTTGTTCATGATGCAAGCTATCATGTAGCTATCCAATTGGAGGGGCCGGAGGATTCGTTACTATCAGTGTTAGGCATGGTAATGGTGTCTCCTCAGTCAACTCGTTCTGAAAATGTTTCCCGTTCTGTTATTTCTGGCGTCATATATGATAATGCTATGCTTCATCATTTGGGAGCACCTCTTTCAAAACCAATTGCTCCTGTGAACTGTATGTGGCGGCCTTCTGGCCAACCAAATAGAGATAATAATGCAGCTGACTGTGAAGGCGATGAATTTAAAGGACTAGAGAGTACAAACCACTCTTCTACTGATCGCCAGCTTTGGGTGTGGATACATGCTTCTGCTCTCACTGAAGCTTATGACACTTTGAAATTAGCTTGCCAAAAAGAGATGGAGGGCAGGGACATCGTGATTAATTGTTTCTCACTTGAGGGTCAACTTGCAAAATTAGAATTAGTGGGATCAAAAGCATTTCAACTCCTTCAAAGGACATTAATCCCTTCTACCAGGACTAGAGATAATTCTTGGAAGTTGATGAGACATTCAGCTGCCAAGGCGGATGAGGATTCCCAATCTACAATTCATCTTAAAAATGAGGAGGAAATTCCTTCTCATGCAATTTTGTCCCTTAATGTCAAGGATCCTTGCACATTAACAGAGAAGGGAAACACTGCAGATGCTCAAGATTTAGGTTCAGCTAGTATACTAGGTGATGTACTAGGAGCTGAAGACAAAAAGCATGTTATCTTTGGACGATTTTCAGATGAACCTGCAGGTAATGGCAAGATCAGAGCAAACAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

328

Amino Acids

36.1

Weight (kDa)

6.46

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POP1_N	PF06978	17 - 74	9.8e-11	Ribonucleases P/MRP protein subunit POP1, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	941, 955
AccI	GTMKAC	1 cut(s)	880
AciI	CCGC	3 cut(s)	76, 394, 734
AclWI	GGATC	3 cut(s)	646, 812, 825
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	449, 780
AcuI	CTGAAG	2 cut(s)	549, 924
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	3 cut(s)	40, 469, 894
AfiI	CCNNNNNNNGG	4 cut(s)	13, 115, 217, 499
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	6 cut(s)	11, 157, 363, 547, 653, 662
AjnI	CCWGG	1 cut(s)	683
AjuI	GAANNNNNNNTTGG	4 cut(s)	46, 78, 741, 773
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	2 cut(s)	270, 709
AlwI	GGATC	3 cut(s)	646, 812, 825
AoxI	GGCC	3 cut(s)	221, 395, 403
ApeKI	GCWGC	2 cut(s)	428, 725
ApoI	RAATTY	2 cut(s)	449, 780
AseI	ATTAAT	2 cut(s)	591, 671
Asp700I	GAANNNNTTC	2 cut(s)	77, 161
AspS9I	GGNCC	2 cut(s)	141, 221
AsuHPI	GGTGA	1 cut(s)	899
AvaII	GGWCC	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	405
BamHI	GGATCC	1 cut(s)	817
BbsI	GAAGAC	1 cut(s)	912
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	440, 712
BccI	CCATC	3 cut(s)	29, 164, 562
BcgI	CGANNNNNNTGC	2 cut(s)	565, 599
BciT130I	CCWGG	1 cut(s)	685
BciVI	GTATCC	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	270, 709
BfaI	CTAG	5 cut(s)	461, 690, 876, 884, 896
BfmI	CTRYAG	2 cut(s)	849, 948
BfuAI	ACCTGC	2 cut(s)	941, 955
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	3 cut(s)	395, 429, 726
BlsI	GCNGC	3 cut(s)	396, 430, 727
Bme1390I	CCNGG	1 cut(s)	685
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	141, 221
BmiI	GGNNCC	3 cut(s)	142, 222, 819
BmrFI	CCNGG	1 cut(s)	685
BmsI	GCATC	2 cut(s)	178, 844
BpiI	GAAGAC	1 cut(s)	912
BpuEI	CTTGAG	2 cut(s)	626, 843
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	114, 729
BsaXI	ACNNNNNCTCC	4 cut(s)	165, 195, 218, 248
Bsc4I	CCNNNNNNNGG	4 cut(s)	13, 115, 217, 499
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	685
BseDI	CCNNGG	2 cut(s)	114, 729
BseGI	GGATG	3 cut(s)	40, 175, 742
BseLI	CCNNNNNNNGG	4 cut(s)	13, 115, 217, 499
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	284
BseRI	GAGGAG	2 cut(s)	258, 788
BseXI	GCAGC	2 cut(s)	440, 712
BsgI	GTGCAG	1 cut(s)	7
BshFI	GGCC	3 cut(s)	223, 397, 405
BsiHKAI	GWGCWC	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	2 cut(s)	593, 787
BslI	CCNNNNNNNGG	4 cut(s)	13, 115, 217, 499
BsmAI	GTCTC	2 cut(s)	270, 709
BsmFI	GGGAC	2 cut(s)	593, 787
BsnI	GGCC	3 cut(s)	223, 397, 405
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	4 cut(s)	487, 638, 817, 963
BspACI	CCGC	3 cut(s)	76, 394, 734
BspANI	GGCC	3 cut(s)	223, 397, 405
BspCNI	CTCAG	1 cut(s)	283
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	142, 222, 819
BspMAI	CTGCAG	2 cut(s)	853, 952
BspMI	ACCTGC	2 cut(s)	941, 955
BspPI	GGATC	3 cut(s)	646, 812, 825
BsrDI	GCAATG	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	114, 729
BssMI	GATC	4 cut(s)	487, 638, 817, 963
BssNAI	GTATAC	1 cut(s)	881
BssNI	GRCGYC	1 cut(s)	315
BssT1I	CCWWGG	2 cut(s)	114, 729
Bst1107I	GTATAC	1 cut(s)	881
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	2 cut(s)	386, 437
Bst6I	CTCTTC	1 cut(s)	484
BstACI	GRCGYC	1 cut(s)	315
BstC8I	GCNNGC	4 cut(s)	69, 193, 494, 556
BstDEI	CTNAG	2 cut(s)	50, 270
BstENI	CCTNNNNNAGG	1 cut(s)	11
BstF5I	GGATG	3 cut(s)	40, 175, 742
BstKTI	GATC	4 cut(s)	490, 641, 820, 966
BstMAI	GTCTC	2 cut(s)	270, 709
BstMBI	GATC	4 cut(s)	487, 638, 817, 963
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 731
BstNI	CCWGG	1 cut(s)	685
BstNSI	RCATGY	4 cut(s)	62, 71, 515, 920
BstSCI	CCNGG	1 cut(s)	683
BstSFI	CTRYAG	2 cut(s)	849, 948
BstV1I	GCAGC	2 cut(s)	440, 712
BstV2I	GAAGAC	1 cut(s)	912
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BstZ17I	GTATAC	1 cut(s)	881
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	3 cut(s)	223, 397, 405
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	3 cut(s)	40, 175, 742
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	3 cut(s)	249, 525, 846
BveI	ACCTGC	2 cut(s)	941, 955
Cac8I	GCNNGC	4 cut(s)	69, 193, 494, 556
CciI	TCATGA	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	141, 221
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	3 cut(s)	39, 468, 893
CviAII	CATG	8 cut(s)	59, 68, 185, 200, 253, 512, 791, 917
CviQI	GTAC	3 cut(s)	39, 468, 893
DdeI	CTNAG	2 cut(s)	50, 270
DpnI	GATC	4 cut(s)	489, 640, 819, 965
DpnII	GATC	4 cut(s)	487, 638, 817, 963
DraI	TTTAAA	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
EciI	GGCGGA	1 cut(s)	749
Eco130I	CCWWGG	2 cut(s)	114, 729
Eco47I	GGWCC	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	549, 924
EcoNI	CCTNNNNNAGG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	683
EcoT14I	CCWWGG	2 cut(s)	114, 729
ErhI	CCWWGG	2 cut(s)	114, 729
FaeI	CATG	8 cut(s)	62, 71, 188, 203, 256, 515, 794, 920
FaqI	GGGAC	2 cut(s)	593, 787
FatI	CATG	8 cut(s)	58, 67, 184, 199, 252, 511, 790, 916
FblI	GTMKAC	1 cut(s)	880
Fnu4HI	GCNGC	3 cut(s)	395, 429, 726
FokI	GGATG	3 cut(s)	47, 182, 749
Fsp4HI	GCNGC	3 cut(s)	395, 429, 726
FspBI	CTAG	5 cut(s)	461, 690, 876, 884, 896
GluI	GCNGC	3 cut(s)	395, 429, 726
HaeIII	GGCC	3 cut(s)	223, 397, 405
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	304
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	8 cut(s)	62, 71, 188, 203, 256, 515, 794, 920
HincII	GTYRAC	2 cut(s)	276, 614
HindII	GTYRAC	2 cut(s)	276, 614
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	2 cut(s)	230, 743
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	899
Hpy166II	GTNNAC	4 cut(s)	276, 382, 614, 881
Hpy188I	TCNGA	3 cut(s)	286, 940, 968
Hpy188III	TCNNGA	5 cut(s)	144, 154, 185, 586, 860
Hpy8I	GTNNAC	4 cut(s)	276, 382, 614, 881
HpyAV	CCTTC	8 cut(s)	119, 129, 408, 434, 668, 687, 795, 832
HpyCH4III	ACNGT	2 cut(s)	386, 437
HpyCH4V	TGCA	9 cut(s)	24, 124, 191, 428, 620, 794, 825, 851, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 731
HpyF3I	CTNAG	2 cut(s)	50, 270
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	8 cut(s)	62, 71, 188, 203, 256, 515, 794, 920
Kzo9I	GATC	4 cut(s)	487, 638, 817, 963
LmnI	GCTCC	3 cut(s)	350, 379, 899
Lsp1109I	GCAGC	2 cut(s)	440, 712
LweI	GCATC	2 cut(s)	178, 844
MaeI	CTAG	5 cut(s)	461, 690, 876, 884, 896
MaeIII	GTNAC	2 cut(s)	101, 234
MalI	GATC	4 cut(s)	489, 640, 819, 965
MboI	GATC	4 cut(s)	487, 638, 817, 963
MboII	GAAGA	2 cut(s)	471, 917
MfeI	CAATTG	2 cut(s)	212, 369
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	1 cut(s)	355
MlsI	TGGCCA	1 cut(s)	405
MluNI	TGGCCA	1 cut(s)	405
Mox20I	TGGCCA	1 cut(s)	405
MroXI	GAANNNNTTC	2 cut(s)	77, 161
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	6 cut(s)	453, 591, 671, 765, 807, 830
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	405
MspA1I	CMGCKG	2 cut(s)	431, 725
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	685
MunI	CAATTG	2 cut(s)	212, 369
MvaI	CCWGG	1 cut(s)	685
MwoI	GCNNNNNNNGC	2 cut(s)	73, 731
NdeII	GATC	4 cut(s)	487, 638, 817, 963
NlaIII	CATG	8 cut(s)	62, 71, 188, 203, 256, 515, 794, 920
NlaIV	GGNNCC	3 cut(s)	142, 222, 819
NspI	RCATGY	4 cut(s)	62, 71, 515, 920
PaeI	GCATGC	1 cut(s)	71
PagI	TCATGA	1 cut(s)	184
PciI	ACATGT	1 cut(s)	58
PdmI	GAANNNNTTC	2 cut(s)	77, 161
PfeI	GAWTC	2 cut(s)	230, 743
PkrI	GCNGC	3 cut(s)	396, 430, 727
PscI	ACATGT	1 cut(s)	58
PshBI	ATTAAT	2 cut(s)	591, 671
Psp6I	CCWGG	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	683
PspN4I	GGNNCC	3 cut(s)	142, 222, 819
PspPI	GGNCC	2 cut(s)	141, 221
PstI	CTGCAG	2 cut(s)	853, 952
PsuI	RGATCY	1 cut(s)	817
PvuII	CAGCTG	2 cut(s)	431, 725
RsaI	GTAC	3 cut(s)	40, 469, 894
RsaNI	GTAC	3 cut(s)	39, 468, 893
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	6 cut(s)	453, 591, 671, 765, 807, 830
SatI	GCNGC	3 cut(s)	395, 429, 726
Sau3AI	GATC	4 cut(s)	487, 638, 817, 963
Sau96I	GGNCC	2 cut(s)	141, 221
SbfI	CCTGCAGG	1 cut(s)	952
ScrFI	CCNGG	1 cut(s)	685
SdaI	CCTGCAGG	1 cut(s)	952
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	2 cut(s)	178, 844
SfcI	CTRYAG	2 cut(s)	849, 948
SinI	GGWCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	605, 858
SmoI	CTYRAG	2 cut(s)	605, 858
SphI	GCATGC	1 cut(s)	71
Sse8387I	CCTGCAGG	1 cut(s)	952
SsiI	CCGC	3 cut(s)	76, 394, 734
SspMI	CTAG	5 cut(s)	461, 690, 876, 884, 896
StyD4I	CCNGG	1 cut(s)	683
StyI	CCWWGG	2 cut(s)	114, 729
TaaI	ACNGT	2 cut(s)	386, 437
TatI	WGTACW	2 cut(s)	467, 892
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	2 cut(s)	230, 743
Tru1I	TTAA	6 cut(s)	453, 591, 671, 765, 807, 830
Tru9I	TTAA	6 cut(s)	453, 591, 671, 765, 807, 830
TscAI	CASTG	3 cut(s)	249, 532, 853
TseI	GCWGC	2 cut(s)	428, 725
TspDTI	ATGAA	6 cut(s)	17, 173, 329, 462, 749, 957
TspRI	CASTG	3 cut(s)	249, 532, 853
VpaK11BI	GGWCC	1 cut(s)	141
VspI	ATTAAT	2 cut(s)	591, 671
XagI	CCTNNNNNAGG	1 cut(s)	11
XapI	RAATTY	2 cut(s)	449, 780
XceI	RCATGY	4 cut(s)	62, 71, 515, 920
XmiI	GTMKAC	1 cut(s)	880
XmnI	GAANNNNTTC	2 cut(s)	77, 161
XspI	CTAG	5 cut(s)	461, 690, 876, 884, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.