Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Reverse (-)

33020132 .. 33025302

Gene Structure 5171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG321000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCTGTTGGGAAATTCTTCCAGCAGCTTTCGCATTCATTGGAGGCTTTACAGTAGCATTCGTCAAAGATGGCTTCTCACTCTTGTCATGTTATCCTCTATTCCTCTACTTGTGGTAGCAGGTGCAGCCATGCCCATCATCATAAACAAGATGGCATCCTGTGGGGAATCTGCTTATGCAAAAGCAGCAAATGTTGTTGAGCAAACAATAGGGTCAATTGGAATAGTTTCATCATCTACTGGCAAGAGGGAAGCTATAACTAGTTGTAACAAACATCTAGTAGATGCTTACAAATCAGAACCAGAACTAACACTAGAGAAACCTCCAAAGGTCTCACTCCACCACCTTGCTGCCGTCAACAAGCTGGATATTCCAGTGCTTATCCTCAGAACAATAGCTGCAATTATCATTGGTGTTATAGTTTTCCAGGGTTATAAAGACTTTTCGCGAACTTCATCAATAGAAGAAAGCTGCAGCATTTTGGGCAATGATGTTTACTATGCTTGGCCTGATATCATTTGTGGTGCTCCCAACACAAGGATATTTCTTTTAGGTTGCTGGCAATCAGAGAGTTTTGATGCAGGACTTCAAGTTCCTCAATCTGCTGTGACATCGTATTTCAAAGAGCAATCTTCTGGTAAGTGTGAACTCCAATTACCAGAGGACACTGTCAGTAGAGAATCTCATCGTTGGCCTATAGGCTTTGTGACCACTGGTTTTGTTCGAGGGAGCAAGAAGACAGTGGCACAAGCTTTTTGTGAGGCAGTACTACTTGCTCATATTAGAGGGGAACAATGGGATACATTCCCCTTCCGATGCCTAACCCGGAAACACAGTATCGCACCCATTGTGCTCTCATCGACACAAGCAAAGCAGTTCTTAATCTCTTGGTGTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

299

Amino Acids

33.01

Weight (kDa)

8.95

Isoelectric Point (pI)

53.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AarI	CACCTGC	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	110
AccII	CGCG	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	13
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	1 cut(s)	537
AgsI	TTSAA	2 cut(s)	590, 622
AhlI	ACTAGT	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	426
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	6 cut(s)	27, 254, 364, 398, 471, 752
AluI	AGCT	6 cut(s)	27, 254, 364, 398, 471, 752
Alw21I	GWGCWC	2 cut(s)	529, 855
Alw26I	GTCTC	1 cut(s)	337
AoxI	GGCC	2 cut(s)	506, 692
ApeKI	GCWGC	7 cut(s)	24, 125, 185, 350, 398, 471, 474
ApoI	RAATTY	1 cut(s)	13
Asp700I	GAANNNNTTC	2 cut(s)	16, 226
AsuC2I	CCSGG	1 cut(s)	826
BbsI	GAAGAC	1 cut(s)	743
Bbv12I	GWGCWC	2 cut(s)	529, 855
BbvI	GCAGC	7 cut(s)	36, 137, 197, 337, 385, 458, 486
BccI	CCATC	3 cut(s)	63, 143, 145
BceAI	ACGGC	1 cut(s)	338
BciT130I	CCWGG	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	793
BcnI	CCSGG	1 cut(s)	826
BcoDI	GTCTC	1 cut(s)	337
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	3 cut(s)	261, 278, 314
BfmI	CTRYAG	2 cut(s)	472, 696
BfuAI	ACCTGC	1 cut(s)	110
BfuI	GTATCC	1 cut(s)	793
BisI	GCNGC	7 cut(s)	25, 126, 186, 351, 399, 472, 475
BlsI	GCNGC	7 cut(s)	26, 127, 187, 352, 400, 473, 476
BmcAI	AGTACT	1 cut(s)	768
Bme1390I	CCNGG	2 cut(s)	428, 826
BmrFI	CCNGG	2 cut(s)	428, 826
BmsI	GCATC	4 cut(s)	164, 274, 568, 806
BpiI	GAAGAC	1 cut(s)	743
BpuMI	CCSGG	1 cut(s)	826
BsaI	GGTCTC	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	427
Bsc4I	CCNNNNNNNGG	1 cut(s)	537
Bse1I	ACTGG	3 cut(s)	244, 374, 718
Bse3DI	GCAATG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	537
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	400
BseNI	ACTGG	3 cut(s)	244, 374, 718
BseXI	GCAGC	7 cut(s)	36, 137, 197, 337, 385, 458, 486
BsgI	GTGCAG	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	2 cut(s)	508, 694
BsiHKAI	GWGCWC	2 cut(s)	529, 855
BsiSI	CCGG	1 cut(s)	826
BslI	CCNNNNNNNGG	1 cut(s)	537
BsmAI	GTCTC	1 cut(s)	337
BsmI	GAATGC	2 cut(s)	33, 57
BsnI	GGCC	2 cut(s)	508, 694
Bso31I	GGTCTC	1 cut(s)	337
Bsp1286I	GDGCHC	2 cut(s)	529, 855
Bsp68I	TCGCGA	1 cut(s)	448
BspANI	GGCC	2 cut(s)	508, 694
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	448
BspMAI	CTGCAG	1 cut(s)	476
BspMI	ACCTGC	1 cut(s)	110
BspTNI	GGTCTC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	493
BsrI	ACTGG	3 cut(s)	244, 374, 718
BssECI	CCNNGG	1 cut(s)	427
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	4 cut(s)	53, 670, 742, 836
BstC8I	GCNNGC	1 cut(s)	560
BstDEI	CTNAG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	155
BstFNI	CGCG	1 cut(s)	448
BstMAI	GTCTC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 125, 185, 483
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	2 cut(s)	426, 824
BstSFI	CTRYAG	2 cut(s)	472, 696
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	7 cut(s)	36, 137, 197, 337, 385, 458, 486
BstV2I	GAAGAC	1 cut(s)	743
BsuI	GTATCC	1 cut(s)	793
BsuRI	GGCC	2 cut(s)	508, 694
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	4 cut(s)	381, 666, 711, 747
BtuMI	TCGCGA	1 cut(s)	448
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	560
Csp6I	GTAC	1 cut(s)	767
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviAII	CATG	2 cut(s)	88, 130
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	337
Eco32I	GATATC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	426
EcoRV	GATATC	1 cut(s)	514
FaeI	CATG	2 cut(s)	91, 133
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FatI	CATG	2 cut(s)	87, 129
Fnu4HI	GCNGC	7 cut(s)	25, 126, 186, 351, 399, 472, 475
FokI	GGATG	1 cut(s)	142
Fsp4HI	GCNGC	7 cut(s)	25, 126, 186, 351, 399, 472, 475
FspBI	CTAG	3 cut(s)	261, 278, 314
GluI	GCNGC	7 cut(s)	25, 126, 186, 351, 399, 472, 475
HaeIII	GGCC	2 cut(s)	508, 694
HapII	CCGG	1 cut(s)	826
Hin1II	CATG	2 cut(s)	91, 133
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	2 cut(s)	167, 680
HpaII	CCGG	1 cut(s)	826
Hpy166II	GTNNAC	3 cut(s)	358, 496, 647
Hpy188I	TCNGA	4 cut(s)	298, 389, 568, 815
Hpy188III	TCNNGA	1 cut(s)	447
Hpy8I	GTNNAC	3 cut(s)	358, 496, 647
HpyAV	CCTTC	1 cut(s)	820
HpyCH4III	ACNGT	4 cut(s)	53, 670, 742, 836
HpyCH4V	TGCA	5 cut(s)	125, 179, 401, 474, 581
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 125, 185, 483
HpyF3I	CTNAG	1 cut(s)	386
Hsp92II	CATG	2 cut(s)	91, 133
LmnI	GCTCC	2 cut(s)	532, 729
Lsp1109I	GCAGC	7 cut(s)	36, 137, 197, 337, 385, 458, 486
LweI	GCATC	4 cut(s)	164, 274, 568, 806
MaeI	CTAG	3 cut(s)	261, 278, 314
MaeIII	GTNAC	3 cut(s)	266, 607, 706
MboII	GAAGA	4 cut(s)	9, 476, 624, 748
MfeI	CAATTG	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	529, 855
MluCI	AATT	4 cut(s)	13, 216, 402, 653
MroXI	GAANNNNTTC	2 cut(s)	16, 226
MseI	TTAA	1 cut(s)	881
MspI	CCGG	1 cut(s)	826
MspR9I	CCNGG	2 cut(s)	428, 826
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	2 cut(s)	33, 57
MvaI	CCWGG	1 cut(s)	428
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	4 cut(s)	30, 125, 185, 483
NciI	CCSGG	1 cut(s)	826
NlaIII	CATG	2 cut(s)	91, 133
NmuCI	GTSAC	2 cut(s)	607, 706
NruI	TCGCGA	1 cut(s)	448
PaqCI	CACCTGC	1 cut(s)	110
PctI	GAATGC	2 cut(s)	33, 57
PdmI	GAANNNNTTC	2 cut(s)	16, 226
PfeI	GAWTC	2 cut(s)	167, 680
PflFI	GACNNNGTC	1 cut(s)	668
PkrI	GCNGC	7 cut(s)	26, 127, 187, 352, 400, 473, 476
PsiI	TTATAA	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PsrI	GAACNNNNNNTAC	2 cut(s)	639, 671
PstI	CTGCAG	1 cut(s)	476
PsyI	GACNNNGTC	1 cut(s)	668
RruI	TCGCGA	1 cut(s)	448
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
SaqAI	TTAA	1 cut(s)	881
SatI	GCNGC	7 cut(s)	25, 126, 186, 351, 399, 472, 475
ScaI	AGTACT	1 cut(s)	768
ScrFI	CCNGG	2 cut(s)	428, 826
SduI	GDGCHC	2 cut(s)	529, 855
SfaNI	GCATC	4 cut(s)	164, 274, 568, 806
SfcI	CTRYAG	2 cut(s)	472, 696
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	4 cut(s)	13, 216, 402, 653
SspMI	CTAG	3 cut(s)	261, 278, 314
StyD4I	CCNGG	2 cut(s)	426, 824
TaaI	ACNGT	4 cut(s)	53, 670, 742, 836
TaqI	TCGA	2 cut(s)	724, 860
TasI	AATT	4 cut(s)	13, 216, 402, 653
TatI	WGTACW	1 cut(s)	766
TfiI	GAWTC	2 cut(s)	167, 680
Tru1I	TTAA	1 cut(s)	881
Tru9I	TTAA	1 cut(s)	881
TscAI	CASTG	4 cut(s)	381, 673, 718, 747
TseFI	GTSAC	2 cut(s)	607, 706
TseI	GCWGC	7 cut(s)	24, 125, 185, 350, 398, 471, 474
Tsp45I	GTSAC	2 cut(s)	607, 706
TspDTI	ATGAA	3 cut(s)	26, 219, 444
TspRI	CASTG	4 cut(s)	381, 673, 718, 747
Tth111I	GACNNNGTC	1 cut(s)	668
XapI	RAATTY	1 cut(s)	13
XmnI	GAANNNNTTC	2 cut(s)	16, 226
XspI	CTAG	3 cut(s)	261, 278, 314
ZrmI	AGTACT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.