Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008132.1

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Forward (+)

26784 .. 31553

Gene Structure 4770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008132.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atgcatgcaacgtggataaaacatatttctagcaacaagaaaattcatgaaaacattccagccccgctagctgaaggtatcaatcaaatatggggaagaagttctcaccatacaaataagggagtctcccaggctcaggtcggagtgtcccacactctggagcatctcatgctctgctctactcacccacgaacacatactttctggtgggcagaagcagagaaccgctattgcaagagcaatttgaaagacctgaggattttacttctggatgaagctacaagtgcagttgatgcaaaatctgaaagggtagttcaagaagagttggacagaattatggctgaagaaactactgttgttgtcgctctttctttgagcacagtaaggaatgcagatatgaaaccagaactaacactagagaaatctccaaaggtctcactccaccaccttgctgccgtcaacaagctggatattccaatgcttgtccttggaacaatagctgcaattatcattggtgttatagttttccagggttataaagacttttcgcgaactttatcaatagaagaaagcagcagaattttgggcaatgatgtttactatgcttggcctgatatcatttgtggtgatcccaacataaggatatttcttttaggttgctgggaatggtctgtaattctacccttgagctgggtcagggcattttggattcctctcgtctccaagggggctcatgtgataggtttgagagagagggactggatttcatgtgatgtaggattgccatgttttccttcggatttccctgattgcagtgcatatttatgccttaaggaaactgaaagtgccgcctccaatgttaaagaggaacttcgtcctccagcacaaagacctttgagggttcccattttacccccatggaatagtatccaagtttctttaagggaaggacccaccaaaatgcgaaatgccgaaacttttagactggaaaacggggtcagaagcaattcatcgtctaactcggagtgtgacaattatgatgttacattctgtcctggtaatttgtttgatggttttgtagcacggacatctttttcactgacaaatttcttgaatgaattccaaggctgtaatttacgcctatgtcctcatgtgaccgataagacgactagctttactggtttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

395

Amino Acids

44.34

Weight (kDa)

6.24

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccII	CGCG	1 cut(s)	550
AciI	CCGC	3 cut(s)	65, 226, 849
AclWI	GGATC	1 cut(s)	623
AcsI	RAATTY	4 cut(s)	42, 579, 1105, 1118
AcuI	CTGAAG	2 cut(s)	93, 363
AfiI	CCNNNNNNNGG	4 cut(s)	136, 157, 639, 690
AflII	CTTAAG	1 cut(s)	830
AgsI	TTSAA	3 cut(s)	247, 317, 1114
AjnI	CCWGG	3 cut(s)	129, 528, 1054
AluBI	AGCT	6 cut(s)	71, 278, 466, 500, 690, 1173
AluI	AGCT	6 cut(s)	71, 278, 466, 500, 690, 1173
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	3 cut(s)	130, 439, 724
AlwI	GGATC	1 cut(s)	623
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	3 cut(s)	452, 500, 573
ApoI	RAATTY	4 cut(s)	42, 579, 1105, 1118
Asp700I	GAANNNNTTC	4 cut(s)	54, 100, 1006, 1118
AspS9I	GGNCC	1 cut(s)	950
AsuHPI	GGTGA	3 cut(s)	98, 176, 638
AsuNHI	GCTAGC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	950
AxyI	CCTNAGG	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	733
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	3 cut(s)	439, 487, 585
BccI	CCATC	1 cut(s)	1064
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	3 cut(s)	131, 530, 1056
BciVI	GTATCC	1 cut(s)	938
BcoDI	GTCTC	3 cut(s)	130, 439, 724
BfaI	CTAG	4 cut(s)	30, 68, 416, 1170
BfrI	CTTAAG	1 cut(s)	830
BfuI	GTATCC	1 cut(s)	938
BisI	GCNGC	4 cut(s)	453, 501, 574, 849
BlsI	GCNGC	4 cut(s)	454, 502, 575, 850
Bme1390I	CCNGG	3 cut(s)	131, 530, 1056
Bme18I	GGWCC	1 cut(s)	950
BmgT120I	GGNCC	1 cut(s)	950
BmiI	GGNNCC	2 cut(s)	903, 952
BmrFI	CCNGG	3 cut(s)	131, 530, 1056
BmsI	GCATC	2 cut(s)	172, 283
BmtI	GCTAGC	1 cut(s)	71
BpmI	CTGGAG	2 cut(s)	179, 864
Bpu10I	CCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	706
BsaI	GGTCTC	1 cut(s)	439
BsaJI	CCNNGG	6 cut(s)	129, 487, 529, 723, 917, 1123
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 157, 639, 690
Bse1I	ACTGG	3 cut(s)	764, 990, 1183
Bse21I	CCTNAGG	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	595
BseBI	CCWGG	3 cut(s)	131, 530, 1056
BseDI	CCNNGG	6 cut(s)	129, 487, 529, 723, 917, 1123
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	4 cut(s)	136, 157, 639, 690
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	2 cut(s)	149, 245
BseNI	ACTGG	3 cut(s)	764, 990, 1183
BseXI	GCAGC	3 cut(s)	439, 487, 585
BseYI	CCCAGC	2 cut(s)	660, 690
BsgI	GTGCAG	1 cut(s)	306
Bsh1236I	CGCG	1 cut(s)	550
BshFI	GGCC	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	380
BslFI	GGGAC	2 cut(s)	133, 770
BslI	CCNNNNNNNGG	4 cut(s)	136, 157, 639, 690
BsmAI	GTCTC	3 cut(s)	130, 439, 724
BsmBI	CGTCTC	1 cut(s)	724
BsmFI	GGGAC	2 cut(s)	133, 770
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	610
Bso31I	GGTCTC	1 cut(s)	439
Bsp1286I	GDGCHC	2 cut(s)	380, 733
Bsp143I	GATC	1 cut(s)	628
Bsp19I	CCATGG	1 cut(s)	917
Bsp68I	TCGCGA	1 cut(s)	550
BspACI	CCGC	3 cut(s)	65, 226, 849
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	2 cut(s)	148, 246
BspFNI	CGCG	1 cut(s)	550
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	903, 952
BspOI	GCTAGC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	623
BspTI	CTTAAG	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	439
BsrDI	GCAATG	1 cut(s)	595
BsrI	ACTGG	3 cut(s)	764, 990, 1183
BssECI	CCNNGG	6 cut(s)	129, 487, 529, 723, 917, 1123
BssMI	GATC	1 cut(s)	628
BssT1I	CCWWGG	4 cut(s)	487, 723, 917, 1123
Bst2UI	CCWGG	3 cut(s)	131, 530, 1056
Bst4CI	ACNGT	2 cut(s)	355, 382
Bst6I	CTCTTC	1 cut(s)	315
BstAFI	CTTAAG	1 cut(s)	830
BstAPI	GCANNNNNTGC	2 cut(s)	169, 293
BstC8I	GCNNGC	2 cut(s)	6, 69
BstDEI	CTNAG	2 cut(s)	135, 254
BstDSI	CCRYGG	1 cut(s)	917
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	550
BstKTI	GATC	1 cut(s)	631
BstMAI	GTCTC	3 cut(s)	130, 439, 724
BstMBI	GATC	1 cut(s)	628
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 169, 284, 293
BstNI	CCWGG	3 cut(s)	131, 530, 1056
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	129, 528, 1054
BstUI	CGCG	1 cut(s)	550
BstV1I	GCAGC	3 cut(s)	439, 487, 585
Bsu36I	CCTNAGG	1 cut(s)	254
BsuI	GTATCC	1 cut(s)	938
BsuRI	GGCC	1 cut(s)	610
BtgI	CCRYGG	1 cut(s)	917
BtsCI	GGATG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	820
BtsIMutI	CAGTG	2 cut(s)	820, 1097
BtuMI	TCGCGA	1 cut(s)	550
Cac8I	GCNNGC	2 cut(s)	6, 69
CciI	TCATGA	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	950
CviAII	CATG	8 cut(s)	5, 47, 169, 734, 768, 786, 918, 1151
DdeI	CTNAG	2 cut(s)	135, 254
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco130I	CCWWGG	4 cut(s)	487, 723, 917, 1123
Eco24I	GRGCYC	1 cut(s)	733
Eco31I	GGTCTC	1 cut(s)	439
Eco32I	GATATC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	950
Eco57I	CTGAAG	2 cut(s)	93, 363
Eco81I	CCTNAGG	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	950
EcoRI	GAATTC	1 cut(s)	1118
EcoRII	CCWGG	3 cut(s)	129, 528, 1054
EcoRV	GATATC	1 cut(s)	616
EcoT14I	CCWWGG	4 cut(s)	487, 723, 917, 1123
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	733
ErhI	CCWWGG	4 cut(s)	487, 723, 917, 1123
Esp3I	CGTCTC	1 cut(s)	724
FaeI	CATG	8 cut(s)	8, 50, 172, 737, 771, 789, 921, 1154
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FaqI	GGGAC	2 cut(s)	133, 770
FatI	CATG	8 cut(s)	4, 46, 168, 733, 767, 785, 917, 1150
FauI	CCCGC	1 cut(s)	72
Fnu4HI	GCNGC	4 cut(s)	453, 501, 574, 849
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	733
Fsp4HI	GCNGC	4 cut(s)	453, 501, 574, 849
FspBI	CTAG	4 cut(s)	30, 68, 416, 1170
GluI	GCNGC	4 cut(s)	453, 501, 574, 849
GsaI	CCCAGC	2 cut(s)	664, 694
GsuI	CTGGAG	2 cut(s)	179, 864
HaeIII	GGCC	1 cut(s)	610
Hin1II	CATG	8 cut(s)	8, 50, 172, 737, 771, 789, 921, 1154
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	2 cut(s)	123, 709
HphI	GGTGA	3 cut(s)	98, 176, 638
Hpy166II	GTNNAC	2 cut(s)	460, 598
Hpy188I	TCNGA	5 cut(s)	143, 304, 799, 1001, 1024
Hpy188III	TCNNGA	6 cut(s)	47, 158, 269, 317, 549, 1111
Hpy8I	GTNNAC	2 cut(s)	460, 598
HpyAV	CCTTC	3 cut(s)	68, 804, 941
HpyCH4III	ACNGT	2 cut(s)	355, 382
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	9 cut(s)	4, 8, 234, 287, 296, 392, 503, 813, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 169, 284, 293
HpyF3I	CTNAG	2 cut(s)	135, 254
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	8 cut(s)	8, 50, 172, 737, 771, 789, 921, 1154
Kzo9I	GATC	1 cut(s)	628
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	3 cut(s)	439, 487, 585
LweI	GCATC	2 cut(s)	172, 283
MaeI	CTAG	4 cut(s)	30, 68, 416, 1170
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	3 cut(s)	1028, 1042, 1153
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MboII	GAAGA	4 cut(s)	108, 332, 356, 578
MhlI	GDGCHC	2 cut(s)	380, 733
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	2 cut(s)	121, 306
MnlI	CCTC	8 cut(s)	249, 723, 747, 859, 862, 888, 891, 1158
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	4 cut(s)	54, 100, 1006, 1118
MseI	TTAA	3 cut(s)	831, 861, 941
MslI	CAYNNNNRTG	2 cut(s)	823, 959
MspCI	CTTAAG	1 cut(s)	830
MspR9I	CCNGG	3 cut(s)	131, 530, 1056
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	3 cut(s)	131, 530, 1056
MvnI	CGCG	1 cut(s)	550
MwoI	GCNNNNNNNGC	4 cut(s)	68, 169, 284, 293
NcoI	CCATGG	1 cut(s)	917
NdeII	GATC	1 cut(s)	628
NheI	GCTAGC	1 cut(s)	67
NlaIII	CATG	8 cut(s)	8, 50, 172, 737, 771, 789, 921, 1154
NlaIV	GGNNCC	2 cut(s)	903, 952
NmuCI	GTSAC	2 cut(s)	1028, 1153
NruI	TCGCGA	1 cut(s)	550
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PagI	TCATGA	1 cut(s)	46
PctI	GAATGC	1 cut(s)	394
PdmI	GAANNNNTTC	4 cut(s)	54, 100, 1006, 1118
PfeI	GAWTC	1 cut(s)	709
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	454, 502, 575, 850
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PpuMI	RGGWCCY	1 cut(s)	950
PsiI	TTATAA	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	950
Psp6I	CCWGG	3 cut(s)	129, 528, 1054
PspFI	CCCAGC	2 cut(s)	660, 690
PspGI	CCWGG	3 cut(s)	129, 528, 1054
PspN4I	GGNNCC	2 cut(s)	903, 952
PspPI	GGNCC	1 cut(s)	950
PspPPI	RGGWCCY	1 cut(s)	950
RruI	TCGCGA	1 cut(s)	550
RseI	CAYNNNNRTG	2 cut(s)	823, 959
SaqAI	TTAA	3 cut(s)	831, 861, 941
SatI	GCNGC	4 cut(s)	453, 501, 574, 849
Sau3AI	GATC	1 cut(s)	628
Sau96I	GGNCC	1 cut(s)	950
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	3 cut(s)	131, 530, 1056
SduI	GDGCHC	2 cut(s)	380, 733
SfaNI	GCATC	2 cut(s)	172, 283
SinI	GGWCC	1 cut(s)	950
SmiMI	CAYNNNNRTG	2 cut(s)	823, 959
SmlI	CTYRAG	2 cut(s)	685, 830
SmoI	CTYRAG	2 cut(s)	685, 830
SphI	GCATGC	1 cut(s)	8
SsiI	CCGC	3 cut(s)	65, 226, 849
SspMI	CTAG	4 cut(s)	30, 68, 416, 1170
StyD4I	CCNGG	3 cut(s)	129, 528, 1054
StyI	CCWWGG	4 cut(s)	487, 723, 917, 1123
TaaI	ACNGT	2 cut(s)	355, 382
TaiI	ACGT	1 cut(s)	14
TaqII	GACCGA	1 cut(s)	1172
TauI	GCSGC	1 cut(s)	851
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	3 cut(s)	831, 861, 941
Tru9I	TTAA	3 cut(s)	831, 861, 941
TscAI	CASTG	2 cut(s)	820, 1104
TseFI	GTSAC	2 cut(s)	1028, 1153
TseI	GCWGC	3 cut(s)	452, 500, 573
Tsp45I	GTSAC	2 cut(s)	1028, 1153
TspDTI	ATGAA	7 cut(s)	35, 63, 288, 413, 756, 999, 1131
TspGWI	ACGGA	1 cut(s)	1099
TspRI	CASTG	2 cut(s)	820, 1104
Van91I	CCANNNNNTGG	1 cut(s)	157
Vha464I	CTTAAG	1 cut(s)	830
VpaK11BI	GGWCC	1 cut(s)	950
XapI	RAATTY	4 cut(s)	42, 579, 1105, 1118
XceI	RCATGY	1 cut(s)	8
XmnI	GAANNNNTTC	4 cut(s)	54, 100, 1006, 1118
XspI	CTAG	4 cut(s)	30, 68, 416, 1170
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.