Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Reverse (-)

33668230 .. 33669272

Gene Structure 1043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1275600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATCTTGCCCGATTATGCTTTTGAAGATAGTAACGGAAGAGGCTTGCATGTTGGATGGTCTGTTATACTCCCCTTAAGCTGGGTCAAGGCATTTTGGATTTCTCTTGTCTCTAAGGGGGCTCATGCAATGGGGTTGAGAGAGAAGCGCTGGATTTCGTGTGAAATGGGGTTGCCATATATTCCTTCAGATTTTCCTGATTGCGATGCATATTTATGCCTCAAGGAGACCGAAGCTGCTGCCTCTAATCTTAAAGAGGAACTTCATCCTCCAGCCATAAGACCTTTGAGGGTTCCCATTTTATCCCCATGGAATAGTATCCAAGTTGCTTTAAACGAAGAATCAAATGCAGTTGGAGATGCTGAAAGTTTTAGGCAGCAACATGGCATCAGAAGCTATTCATCACTAATTCAGACTCTGGAAATTCTGATACTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

147

Amino Acids

16.38

Weight (kDa)

5.47

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POPLD	PF08170	19 - 95	1.8e-17	POPLD (NUC188) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	423
AcuI	CTGAAG	1 cut(s)	171
AfeI	AGCGCT	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflII	CTTAAG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	3 cut(s)	81, 236, 396
AluI	AGCT	3 cut(s)	81, 236, 396
Alw26I	GTCTC	2 cut(s)	115, 221
AlwNI	CAGNNNCTG	1 cut(s)	418
Aor51HI	AGCGCT	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	236, 239, 376
ApoI	RAATTY	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	397
AspLEI	GCGC	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	124
BbvI	GCAGC	3 cut(s)	223, 226, 388
BccI	CCATC	1 cut(s)	51
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciVI	GTATCC	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	115, 221
BfoI	RGCGCY	1 cut(s)	151
BfrI	CTTAAG	1 cut(s)	76
BfuI	GTATCC	1 cut(s)	329
BisI	GCNGC	3 cut(s)	237, 240, 377
BlsI	GCNGC	3 cut(s)	238, 241, 378
BmiI	GGNNCC	1 cut(s)	294
BmsI	GCATC	3 cut(s)	196, 349, 396
BpmI	CTGGAG	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse3DI	GCAATG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	2 cut(s)	62, 265
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	223, 226, 388
BseYI	CCCAGC	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	115, 221
Bso31I	GGTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	294
BspTI	CTTAAG	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	34
BstAFI	CTTAAG	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	1 cut(s)	114
BstDSI	CCRYGG	1 cut(s)	308
BstF5I	GGATG	2 cut(s)	62, 265
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	115, 221
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	53
BstV1I	GCAGC	3 cut(s)	223, 226, 388
BsuI	GTATCC	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	62, 265
Cac8I	GCNNGC	1 cut(s)	47
CaiI	CAGNNNCTG	1 cut(s)	418
CfoI	GCGC	1 cut(s)	150
CviAII	CATG	4 cut(s)	50, 125, 309, 383
CviJI	RGCY	6 cut(s)	45, 81, 122, 236, 275, 396
CviKI_1	RGCY	6 cut(s)	45, 81, 122, 236, 275, 396
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraI	TTTAAA	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	308
Eco24I	GRGCYC	1 cut(s)	124
Eco31I	GGTCTC	1 cut(s)	221
Eco47III	AGCGCT	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	308
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	4 cut(s)	53, 128, 312, 386
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FatI	CATG	4 cut(s)	49, 124, 308, 382
Fnu4HI	GCNGC	3 cut(s)	237, 240, 377
FokI	GGATG	2 cut(s)	69, 252
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	237, 240, 377
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	3 cut(s)	237, 240, 377
GsaI	CCCAGC	1 cut(s)	85
GsuI	CTGGAG	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	151
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	4 cut(s)	53, 128, 312, 386
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	341, 415
Hpy188I	TCNGA	4 cut(s)	190, 392, 414, 429
Hpy188III	TCNNGA	2 cut(s)	197, 419
HpyAV	CCTTC	1 cut(s)	195
HpyCH4V	TGCA	4 cut(s)	49, 128, 209, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	393
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	53, 128, 312, 386
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	5 cut(s)	67, 136, 210, 285, 404
Lsp1109I	GCAGC	3 cut(s)	223, 226, 388
LweI	GCATC	3 cut(s)	196, 349, 396
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	38, 51, 350
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	2 cut(s)	408, 423
MlyI	GAGTC	1 cut(s)	409
MmeI	TCCRAC	2 cut(s)	34, 334
MnlI	CCTC	6 cut(s)	35, 230, 250, 253, 279, 282
Mph1103I	ATGCAT	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	397
MseI	TTAA	3 cut(s)	77, 252, 332
MslI	CAYNNNNRTG	1 cut(s)	214
MspCI	CTTAAG	1 cut(s)	76
MwoI	GCNNNNNNNGC	1 cut(s)	393
NcoI	CCATGG	1 cut(s)	308
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	4 cut(s)	53, 128, 312, 386
NlaIV	GGNNCC	1 cut(s)	294
NsiI	ATGCAT	1 cut(s)	211
NspI	RCATGY	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	238, 241, 378
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PspFI	CCCAGC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	77, 252, 332
SatI	GCNGC	3 cut(s)	237, 240, 377
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	409
SduI	GDGCHC	1 cut(s)	124
SetI	ASST	4 cut(s)	83, 238, 286, 398
SfaNI	GCATC	3 cut(s)	196, 349, 396
SmiMI	CAYNNNNRTG	1 cut(s)	214
SmlI	CTYRAG	2 cut(s)	76, 221
SmoI	CTYRAG	2 cut(s)	76, 221
Sse9I	AATT	2 cut(s)	408, 423
StyI	CCWWGG	1 cut(s)	308
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	408, 423
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	3 cut(s)	77, 252, 332
Tru9I	TTAA	3 cut(s)	77, 252, 332
TseI	GCWGC	3 cut(s)	236, 239, 376
TspDTI	ATGAA	2 cut(s)	254, 390
TspGWI	ACGGA	1 cut(s)	51
Vha464I	CTTAAG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	423
XceI	RCATGY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	397
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.