Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Forward (+)

16045772 .. 16050786

Gene Structure 5015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTCAGTTACTTGACCAGTTACAGTGACATGGTCAGTTACATGGTCAGTTACTTGGTCAGTTACTTGACCAGTTACACAATTTGTGTAGCTCCCTTAATACTTTCTACTTTTTCTTCTCGTCATGTTAATGTAGTAACCAGTAAATTGCTTGAATGTACAAAACATGTTCTAGGTTCAGCAGACAGAACTGTGAAATTCTGGGATCTGGAAACTTTTGAACTGATTGGATCTACCAAGCCTGAGAGCGGCAGCATGATTAATTTTTTCTCACTTGAGGGCCAACTCGCGAAATTAGAAGTTATGGGATCAAAAGCATTTCAACTCCTCCAAAGGACATTGTGCCCTGTTACAAGAAGAAAGGATCATACTTGGGCATTGGAGAGACATTCAGCTGCTGAAGCTCCAGATGATTCCCAATCTAAGACTATACTTGAAAATGAGGAAGACATTCCTTCTCATGCAGTGTTGTCTCTTAGAGTCAAGGATCCTCGCATGTTCATAGAGAAACGAAAGACTGCATGTGCTTCAGACTTAGGTTCTGCTAGTATACTAGCTGATGAACAAGGAACTGAAGACAAAGAGCATGCTGTCAGTGGAATTATTTCAGACAAGAAGAAAGAGTTACTTTCCTCGATGGGTTCAGAACTCGAAGGTACTAGCATGCTCGCAGAAAAGAATTTGTGGGATGTTAACAGTGGTATAAGTCCTCCAGTGGAAGAGATGGTTCTTTGCCAGGAAAGATATGACCAGAATAAAAAATTCTTCTGCCTTGATGAATCAAGTTCAAGGGTACTAAATACTTCAACCAATTTGCAGTGCAGTTCTTGTCCTGTTCTGCTTTTGAAAAATGACAACGGAAGGGGCTTGCATATTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

293

Amino Acids

32.55

Weight (kDa)

5.46

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	550
AccII	CGCG	1 cut(s)	290
AciI	CCGC	1 cut(s)	249
AclWI	GGATC	6 cut(s)	213, 238, 316, 372, 482, 495
AcsI	RAATTY	3 cut(s)	197, 679, 761
AcuI	CTGAAG	3 cut(s)	420, 513, 594
AfaI	GTAC	3 cut(s)	160, 658, 795
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	7 cut(s)	155, 221, 323, 437, 789, 807, 847
AjnI	CCWGG	1 cut(s)	735
AluBI	AGCT	4 cut(s)	92, 395, 404, 557
AluI	AGCT	4 cut(s)	92, 395, 404, 557
Alw26I	GTCTC	2 cut(s)	379, 477
AlwI	GGATC	6 cut(s)	213, 238, 316, 372, 482, 495
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	2 cut(s)	252, 395
ApoI	RAATTY	3 cut(s)	197, 679, 761
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	2 cut(s)	450, 604
AspS9I	GGNCC	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	487
BbsI	GAAGAC	2 cut(s)	453, 582
BbvI	GCAGC	2 cut(s)	264, 382
BccI	CCATC	2 cut(s)	631, 718
BciT130I	CCWGG	1 cut(s)	737
BcoDI	GTCTC	2 cut(s)	379, 477
BfaI	CTAG	4 cut(s)	173, 546, 554, 660
BisI	GCNGC	3 cut(s)	250, 253, 396
BlsI	GCNGC	3 cut(s)	251, 254, 397
Bme1390I	CCNGG	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	1 cut(s)	737
BpiI	GAAGAC	2 cut(s)	453, 582
BpmI	CTGGAG	2 cut(s)	390, 696
BpuEI	CTTGAG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	4 cut(s)	18, 72, 141, 713
BseBI	CCWGG	1 cut(s)	737
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	4 cut(s)	18, 72, 141, 713
BseRI	GAGGAG	1 cut(s)	317
BseSI	GKGCMC	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	264, 382
BsgI	GTGCAG	1 cut(s)	841
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	379, 477
BsnI	GGCC	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp1407I	TGTACA	1 cut(s)	158
Bsp143I	GATC	5 cut(s)	205, 230, 308, 364, 487
Bsp68I	TCGCGA	1 cut(s)	290
BspACI	CCGC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	489
BspPI	GGATC	6 cut(s)	213, 238, 316, 372, 482, 495
BsrBI	CCGCTC	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	158
BsrI	ACTGG	4 cut(s)	18, 72, 141, 713
BssMI	GATC	5 cut(s)	205, 230, 308, 364, 487
BssNAI	GTATAC	1 cut(s)	551
Bst1107I	GTATAC	1 cut(s)	551
Bst2UI	CCWGG	1 cut(s)	737
Bst4CI	ACNGT	3 cut(s)	26, 193, 698
Bst6I	CTCTTC	1 cut(s)	714
BstAUI	TGTACA	1 cut(s)	158
BstC8I	GCNNGC	4 cut(s)	588, 665, 669, 869
BstDEI	CTNAG	4 cut(s)	243, 423, 476, 535
BstF5I	GGATG	1 cut(s)	694
BstFNI	CGCG	1 cut(s)	290
BstKTI	GATC	5 cut(s)	208, 233, 311, 367, 490
BstMAI	GTCTC	2 cut(s)	379, 477
BstMBI	GATC	5 cut(s)	205, 230, 308, 364, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	1 cut(s)	737
BstNSI	RCATGY	5 cut(s)	170, 499, 525, 590, 667
BstSCI	CCNGG	1 cut(s)	735
BstSLI	GKGCMC	1 cut(s)	347
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	264, 382
BstV2I	GAAGAC	2 cut(s)	453, 582
BstX2I	RGATCY	3 cut(s)	205, 230, 487
BstYI	RGATCY	3 cut(s)	205, 230, 487
BstZ17I	GTATAC	1 cut(s)	551
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	694
BtsI	GCAGTG	2 cut(s)	471, 824
BtsIMutI	CAGTG	6 cut(s)	31, 471, 601, 703, 720, 824
BtuMI	TCGCGA	1 cut(s)	290
Cac8I	GCNNGC	4 cut(s)	588, 665, 669, 869
CaiI	CAGNNNCTG	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	280
Csp6I	GTAC	3 cut(s)	159, 657, 794
CviJI	RGCY	7 cut(s)	92, 241, 282, 395, 404, 557, 867
CviKI_1	RGCY	7 cut(s)	92, 241, 282, 395, 404, 557, 867
CviQI	GTAC	3 cut(s)	159, 657, 794
DdeI	CTNAG	4 cut(s)	243, 423, 476, 535
DpnI	GATC	5 cut(s)	207, 232, 310, 366, 489
DpnII	GATC	5 cut(s)	205, 230, 308, 364, 487
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Eco57I	CTGAAG	3 cut(s)	420, 513, 594
EcoRII	CCWGG	1 cut(s)	735
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	3 cut(s)	250, 253, 396
FokI	GGATG	1 cut(s)	701
Fsp4HI	GCNGC	3 cut(s)	250, 253, 396
FspBI	CTAG	4 cut(s)	173, 546, 554, 660
GluI	GCNGC	3 cut(s)	250, 253, 396
GsuI	CTGGAG	2 cut(s)	390, 696
HaeIII	GGCC	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HinfI	GANTC	3 cut(s)	413, 480, 779
HpaI	GTTAAC	1 cut(s)	694
Hpy166II	GTNNAC	2 cut(s)	551, 694
Hpy188I	TCNGA	3 cut(s)	532, 610, 646
Hpy188III	TCNNGA	3 cut(s)	209, 289, 407
Hpy8I	GTNNAC	2 cut(s)	551, 694
HpyAV	CCTTC	3 cut(s)	465, 647, 855
HpyCH4III	ACNGT	3 cut(s)	26, 193, 698
HpyCH4V	TGCA	5 cut(s)	464, 521, 817, 822, 871
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	4 cut(s)	243, 423, 476, 535
KspAI	GTTAAC	1 cut(s)	694
Kzo9I	GATC	5 cut(s)	205, 230, 308, 364, 487
LmnI	GCTCC	2 cut(s)	97, 409
Lsp1109I	GCAGC	2 cut(s)	264, 382
MaeI	CTAG	4 cut(s)	173, 546, 554, 660
MalI	GATC	5 cut(s)	207, 232, 310, 366, 489
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	5 cut(s)	205, 230, 308, 364, 487
MboII	GAAGA	7 cut(s)	108, 369, 458, 587, 628, 731, 757
MflI	RGATCY	3 cut(s)	205, 230, 487
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	9 cut(s)	81, 146, 197, 262, 293, 600, 679, 761, 811
MlyI	GAGTC	1 cut(s)	489
MnlI	CCTC	6 cut(s)	271, 338, 436, 501, 643, 720
MroXI	GAANNNNTTC	2 cut(s)	450, 604
MseI	TTAA	4 cut(s)	98, 129, 261, 693
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	737
MvaI	CCWGG	1 cut(s)	737
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeII	GATC	5 cut(s)	205, 230, 308, 364, 487
NlaIV	GGNNCC	1 cut(s)	489
NmuCI	GTSAC	1 cut(s)	26
NruI	TCGCGA	1 cut(s)	290
NspI	RCATGY	5 cut(s)	170, 499, 525, 590, 667
PaeI	GCATGC	2 cut(s)	590, 667
PciI	ACATGT	1 cut(s)	166
PdmI	GAANNNNTTC	2 cut(s)	450, 604
PfeI	GAWTC	2 cut(s)	413, 779
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	3 cut(s)	251, 254, 397
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PscI	ACATGT	1 cut(s)	166
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	1 cut(s)	489
PspPI	GGNCC	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	398
PsuI	RGATCY	3 cut(s)	205, 230, 487
PsyI	GACNNNGTC	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	395
RruI	TCGCGA	1 cut(s)	290
RsaI	GTAC	3 cut(s)	160, 658, 795
RsaNI	GTAC	3 cut(s)	159, 657, 794
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	4 cut(s)	98, 129, 261, 693
SatI	GCNGC	3 cut(s)	250, 253, 396
Sau3AI	GATC	5 cut(s)	205, 230, 308, 364, 487
Sau96I	GGNCC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	1 cut(s)	737
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	7 cut(s)	94, 178, 397, 406, 541, 559, 658
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SphI	GCATGC	2 cut(s)	590, 667
Sse9I	AATT	9 cut(s)	81, 146, 197, 262, 293, 600, 679, 761, 811
SsiI	CCGC	1 cut(s)	249
SspMI	CTAG	4 cut(s)	173, 546, 554, 660
StyD4I	CCNGG	1 cut(s)	735
TaaI	ACNGT	3 cut(s)	26, 193, 698
TaqI	TCGA	2 cut(s)	635, 651
TasI	AATT	9 cut(s)	81, 146, 197, 262, 293, 600, 679, 761, 811
TatI	WGTACW	1 cut(s)	158
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	413, 779
Tru1I	TTAA	4 cut(s)	98, 129, 261, 693
Tru9I	TTAA	4 cut(s)	98, 129, 261, 693
TscAI	CASTG	6 cut(s)	31, 471, 601, 703, 720, 824
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	2 cut(s)	252, 395
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	3 cut(s)	490, 576, 792
TspGWI	ACGGA	1 cut(s)	873
TspRI	CASTG	6 cut(s)	31, 471, 601, 703, 720, 824
Tth111I	GACNNNGTC	1 cut(s)	32
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	3 cut(s)	197, 679, 761
XceI	RCATGY	5 cut(s)	170, 499, 525, 590, 667
XmiI	GTMKAC	1 cut(s)	550
XmnI	GAANNNNTTC	2 cut(s)	450, 604
XspI	CTAG	4 cut(s)	173, 546, 554, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.