Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Reverse (-)

25604196 .. 25605284

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g27430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAGTTTTTCGCTGACAAATTTCTTGAGTGAAATTCAAGGCTGTCATTTACGTCTGTATCCTTATGTCGCTGATAAGGAGACAAGTTTCACGAAGTTTATGAGGGATGAAATCAAGCTTGGTCCAGGCCAAGATCAGTTTACTAGATTTAAGAACAGTCATAAACTATTTTTTGTTAGAGCATTACTCCCTGCTTACAAGGAAGGTTTTCTTGAAGAGGGAGCTGTAATTTGTGCACCTCGACTGACGGACATATCACTGTGGACCAGGTCAGAGAGTTTCGATGGAGGACTTCAATTGCCTCAATCTGCTGTGGCTTCGTACTTCGCAGAGCAATCTTCTGGTAAGTGGGAACTCCAAATGCCAAAGGACCCTGTTCTTAGAGAAACTTATCGTTCGCCAATAGGCTTCGTCACCACTGGTTTTGTTAGAGGGAGCAAGAAGCCAGTAGCACAAGCTTTTTGCGAGGCAGTTGTACTCGCTTGTCTCAGAGGAACAATGGGATTTGGTATTTGCTCTTGCCACCATTGTTCTGGAGCATCAGGAAGAAGATGTCGAATTCTTGTGAGCAGCCGCAGAATATGTGGTTGGCTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

200

Amino Acids

22.24

Weight (kDa)

9.13

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	574
AcsI	RAATTY	3 cut(s)	19, 33, 558
AfaI	GTAC	2 cut(s)	323, 477
AgsI	TTSAA	3 cut(s)	38, 215, 296
AjnI	CCWGG	2 cut(s)	124, 266
AjuI	GAANNNNNNNTTGG	3 cut(s)	102, 134, 571
AluBI	AGCT	3 cut(s)	118, 224, 458
AluI	AGCT	3 cut(s)	118, 224, 458
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	74, 491
Alw44I	GTGCAC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	127
ApaLI	GTGCAC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	570
ApoI	RAATTY	3 cut(s)	19, 33, 558
Asp700I	GAANNNNTTC	1 cut(s)	207
AspS9I	GGNCC	3 cut(s)	122, 264, 370
AsuHPI	GGTGA	1 cut(s)	406
AvaII	GGWCC	3 cut(s)	122, 264, 370
BaeGI	GKGCMC	1 cut(s)	238
BaeI	ACNNNNGTAYC	2 cut(s)	41, 74
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	582
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	2 cut(s)	126, 268
BciVI	GTATCC	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	74, 491
BfaI	CTAG	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	69
BisI	GCNGC	2 cut(s)	571, 574
BlsI	GCNGC	2 cut(s)	572, 575
Bme1390I	CCNGG	2 cut(s)	126, 268
Bme18I	GGWCC	3 cut(s)	122, 264, 370
BmgT120I	GGNCC	3 cut(s)	122, 264, 370
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	2 cut(s)	126, 268
BmsI	GCATC	1 cut(s)	548
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BpmI	CTGGAG	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	424, 446
BseBI	CCWGG	2 cut(s)	126, 268
BseGI	GGATG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	502
BseNI	ACTGG	2 cut(s)	424, 446
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	582
BshFI	GGCC	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	74, 491
BsnI	GGCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	574
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	424, 446
BssMI	GATC	1 cut(s)	133
Bst2UI	CCWGG	2 cut(s)	126, 268
Bst4CI	ACNGT	2 cut(s)	158, 261
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	2 cut(s)	380, 488
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	2 cut(s)	74, 491
BstMBI	GATC	1 cut(s)	133
BstNI	CCWGG	2 cut(s)	126, 268
BstSCI	CCNGG	2 cut(s)	124, 266
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	582
BstXI	CCANNNNNNTGG	1 cut(s)	533
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	112
BtsIMutI	CAGTG	2 cut(s)	257, 417
Cac8I	GCNNGC	1 cut(s)	594
Cfr13I	GGNCC	3 cut(s)	122, 264, 370
CsiI	ACCWGGT	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	322, 476
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviQI	GTAC	2 cut(s)	322, 476
DdeI	CTNAG	2 cut(s)	380, 488
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco47I	GGWCC	3 cut(s)	122, 264, 370
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	558
EcoRII	CCWGG	2 cut(s)	124, 266
FaiI	YATR	6 cut(s)	66, 101, 162, 254, 583, 598
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
Fnu4HI	GCNGC	2 cut(s)	571, 574
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	571, 574
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	2 cut(s)	571, 574
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	129
HindIII	AAGCTT	2 cut(s)	116, 456
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	3 cut(s)	141, 236, 264
Hpy188I	TCNGA	2 cut(s)	274, 491
Hpy188III	TCNNGA	5 cut(s)	25, 91, 212, 534, 543
Hpy8I	GTNNAC	3 cut(s)	141, 236, 264
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	158, 261
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	236, 596
HpyF3I	CTNAG	2 cut(s)	380, 488
HpySE526I	ACGT	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	3 cut(s)	221, 435, 536
Lsp1109I	GCAGC	1 cut(s)	582
LweI	GCATC	1 cut(s)	548
MabI	ACCWGGT	1 cut(s)	266
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	4 cut(s)	227, 330, 558, 561
MfeI	CAATTG	1 cut(s)	296
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	5 cut(s)	19, 33, 228, 296, 558
MnlI	CCTC	8 cut(s)	96, 211, 249, 281, 312, 425, 460, 485
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	126, 268
MunI	CAATTG	1 cut(s)	296
MvaI	CCWGG	2 cut(s)	126, 268
NdeII	GATC	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	412
PdmI	GAANNNNTTC	1 cut(s)	207
PflFI	GACNNNGTC	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	572, 575
PpuMI	RGGWCCY	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	124, 266
PspGI	CCWGG	2 cut(s)	124, 266
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	3 cut(s)	122, 264, 370
PspPPI	RGGWCCY	1 cut(s)	370
PsyI	GACNNNGTC	1 cut(s)	268
RsaI	GTAC	2 cut(s)	323, 477
RsaNI	GTAC	2 cut(s)	322, 476
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	2 cut(s)	571, 574
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	3 cut(s)	122, 264, 370
ScrFI	CCNGG	2 cut(s)	126, 268
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	7 cut(s)	55, 120, 208, 226, 241, 272, 460
SexAI	ACCWGGT	1 cut(s)	266
SfaNI	GCATC	1 cut(s)	548
SinI	GGWCC	3 cut(s)	122, 264, 370
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	5 cut(s)	19, 33, 228, 296, 558
SsiI	CCGC	1 cut(s)	574
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	124, 266
TaaI	ACNGT	2 cut(s)	158, 261
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	3 cut(s)	241, 282, 556
TasI	AATT	5 cut(s)	19, 33, 228, 296, 558
TatI	WGTACW	1 cut(s)	475
TauI	GCSGC	1 cut(s)	576
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	2 cut(s)	264, 424
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	570
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	123
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	264, 424
Tth111I	GACNNNGTC	1 cut(s)	268
VneI	GTGCAC	1 cut(s)	234
VpaK11BI	GGWCC	3 cut(s)	122, 264, 370
XapI	RAATTY	3 cut(s)	19, 33, 558
XcmI	CCANNNNNNNNNTGG	1 cut(s)	530
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.