Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Forward (+)

15271157 .. 15273964

Gene Structure 2808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00394510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTTGGTAAACTTAGAACTCGGCTTTCGGTTGGCGAAGCGAGAACCGCTATTGCAAGAGCAATTTTGAAAGACCCGAGGATTTTACTTACGGATGAAGCTACAAGTGCAGTTGATGCAAAATGCGAGAGGGTAGTTCAAGAAGCGTGGGACAAAATTATGCTAAAGAAACTACGGTTATGGTCTGTAATTCTACCCTTGAGCTGGGTCAGGGCATTTTGGATTCCTCTCGTCTCCAAGGGGGCTCATGCGATAGGTTTGAGAGAGAGGCACTGGATTTCATGTAATGTAGGATTGCCATGTTTTCCTTCGGATTTCCCTGATTGCAGTGCATATTTATGCCTTAAGGAAACTGAAAGTGCCGCCTCCAATGTTAAAGAGGAACTTCGTCCTCCAGCACATGCAAAGACCTTTGAGGGTTCCCATTTTACCCCCATGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

147

Amino Acids

16.5

Weight (kDa)

8.9

Isoelectric Point (pI)

28.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POPLD	PF08170	61 - 137	3e-16	POPLD (NUC188) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	48, 363
AfiI	CCNNNNNNNGG	1 cut(s)	204
AflII	CTTAAG	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	70, 140
AluBI	AGCT	2 cut(s)	101, 204
AluI	AGCT	2 cut(s)	101, 204
Alw26I	GTCTC	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	247
BcoDI	GTCTC	1 cut(s)	238
BfrI	CTTAAG	1 cut(s)	344
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
BmeT110I	CYCGRG	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	421
BmsI	GCATC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	220
BsaJI	CCNNGG	3 cut(s)	77, 237, 435
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	77, 237, 435
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	278
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	1 cut(s)	238
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	164
BsoBI	CYCGRG	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp19I	CCATGG	1 cut(s)	435
BspACI	CCGC	2 cut(s)	48, 363
BspLI	GGNNCC	1 cut(s)	421
BspTI	CTTAAG	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	3 cut(s)	77, 237, 435
BssT1I	CCWWGG	2 cut(s)	237, 435
Bst4CI	ACNGT	1 cut(s)	177
BstAFI	CTTAAG	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 107, 116
BstNSI	RCATGY	1 cut(s)	404
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	271, 334
CspCI	CAANNNNNGTGG	2 cut(s)	128, 163
CviAII	CATG	5 cut(s)	248, 282, 300, 401, 436
CviJI	RGCY	4 cut(s)	25, 101, 204, 245
CviKI_1	RGCY	4 cut(s)	25, 101, 204, 245
DdeI	CTNAG	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	237, 435
Eco24I	GRGCYC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	76
EcoT14I	CCWWGG	2 cut(s)	237, 435
EcoT38I	GRGCYC	1 cut(s)	247
ErhI	CCWWGG	2 cut(s)	237, 435
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	5 cut(s)	251, 285, 303, 404, 439
FaiI	YATR	9 cut(s)	161, 181, 249, 283, 301, 334, 340, 402, 437
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	5 cut(s)	247, 281, 299, 400, 435
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	363
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	378
Hin1II	CATG	5 cut(s)	251, 285, 303, 404, 439
HinfI	GANTC	1 cut(s)	223
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	11
HpyAV	CCTTC	1 cut(s)	318
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	6 cut(s)	56, 110, 119, 327, 332, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 107, 116
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	5 cut(s)	251, 285, 303, 404, 439
LpnPI	CCDG	5 cut(s)	190, 196, 259, 333, 408
LweI	GCATC	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	3 cut(s)	63, 156, 189
MnlI	CCTC	8 cut(s)	72, 123, 237, 261, 373, 376, 402, 409
MseI	TTAA	2 cut(s)	345, 375
MslI	CAYNNNNRTG	1 cut(s)	337
MspCI	CTTAAG	1 cut(s)	344
MwoI	GCNNNNNNNGC	3 cut(s)	47, 107, 116
NcoI	CCATGG	1 cut(s)	435
NlaIII	CATG	5 cut(s)	251, 285, 303, 404, 439
NlaIV	GGNNCC	1 cut(s)	421
NspI	RCATGY	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	345, 375
SatI	GCNGC	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	4 cut(s)	103, 206, 259, 413
SfaNI	GCATC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	337
SmlI	CTYRAG	2 cut(s)	199, 344
SmoI	CTYRAG	2 cut(s)	199, 344
Sse9I	AATT	3 cut(s)	63, 156, 189
SsiI	CCGC	2 cut(s)	48, 363
StyI	CCWWGG	2 cut(s)	237, 435
TaaI	ACNGT	1 cut(s)	177
TasI	AATT	3 cut(s)	63, 156, 189
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	345, 375
Tru9I	TTAA	2 cut(s)	345, 375
TscAI	CASTG	2 cut(s)	278, 334
TspDTI	ATGAA	2 cut(s)	111, 270
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	2 cut(s)	278, 334
Vha464I	CTTAAG	1 cut(s)	344
XceI	RCATGY	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.