Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Forward (+)

33657695 .. 33662196

Gene Structure 4502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG313300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2577 bp

ATGGCTACCGATGGATACAAACGTTCGCAAGTTTCATCAGCGCCTCGAAAATTAAGTGTCCAAAAGTTTGCGGAAGCGCGAGCTTCAGAACTTGAGACGCTCCACACAGTTGTATCGGACCGGCTGAACAATGATTTCCGGTCTCAAAGAAGCAAGAGAAGAAGGACCACTGCTTATGACAATCAAGCCGCAAAAAGGAGATGTCGAAAAAAGCGAAAGCACGGAGTAGGTGATCAAAGCAATGCTTTGCCTGCAGAGAAAGATGACAAGAATGTTCCTCGTCGCATTCGTCGGAGAGCTGAGCTTAAAAAGAACCTTCATACGGGTTTTTGTACCTCAGGGGATGGAACAAAGAGGCTGAGAACACATGTTTGGCATGCGAAGCGGTTCACAATGACAAAGCTTTGGGGTTATTATCTTCCCCTAGGATTGCAGGGCAGGGGAAGGGGTTCCAGAGCTGTCCTGAAATGGTTCAAAGATGGAGTGTTTGCCCATGATGCAAGCTATTATGTAGCTATGCAATTGGAGGGTACAGAGGAATCATTACTATCAGTGTTAAGAATGGTGTTGGTGCCTTCTCCATTAGCTCGTTCCGAAGATATTTCCCGTTCCATTATTTCAGGGGCCATATATGATACTGCTATGCTTCATCAGTTGGGAGCCCCATGTTCAACCCCAATTGCACCTGCAACCTATATGTGGCAACCCTCTTGCCAACGGGATAGAGATAATGATGCTTCTGCTGTCTATGATGGTGGTGCATGTAATGGTCTAGAGGTTAAAGAGCGCTCGTCTACCTTTCGCCAACTTTGGGTGTGGATACATGCTTCTGCTTTCACTGCAGGGTATGATACTCTCAAATTAGCTTGCCAAAAAGAGATGGAAGAGAGCGGCAGCATGATTAATTTTTTCTCACTTGAGGGCCAACTCGCGAAATTAGAAGTTATGGGATCAAAAGCATTTCAACTCCTCCAAAGAACATTGTGCCCTGTTACAAGAAGAAAGGATCATACTTGGGCATTGGAGAGACATTCAGCTGCTGAAGCTCCAGATGATTCCCAATCTAAGACTATACTTGAAAATGAGGAAGACATTCCTTCTCATGCAGTGTTGTCTCTTAGAGTCAAGGATCCTCGCATGTTCATAGAGAAACGAAAGACTGCATGTGCTTCAGACTCAGGTTCTGCTAGTATACTAGCTGTTGAACAAGGAACTGAAGACAAAGAGCATGCTGTCAGTGGAATTATTTCAGACAAGAAGAAAGAGTTACTTTCCTCGATGGGGTCAGAACTCGAAGGTACTAGCATGCTCGCAGAAAAGAATTTGTGGGATGTTAACAGTGGTATAAGTCCTCCAGTGGAAGAGATGGTTCTCTGCCAGGAAAGATATGACCAGAATAAAAAATTCTTCTGCCTTGATGAATCAAGTTCAAGGGTACTAAATACTTCAACCAATTTGCAGTGCAGTTCTTGTCCTGTTCTGCTTTTGAAAAATGACAACGGAAGGGGCTTGCATATTGGTTGGTCTGTAATTCTACCCTTGAGCTGGGTCAGGGCATTTTGGATTCCTCTCGTCTCCAAGGGGGCTCATGTGATAGGTTTGAGAGAGAGGCACTGGATTTCATGTGACGTAGGATTGCCATGTTTTCCTTCGGATTTCCCTGATTGCAGTGCATATTTATGCCTTAAGGAAACTGAAAGTGCCGCCTCCAATGTTAAAGAGGAACTTCGTCCTCCAGCACAAAGACCTTTGAGGGTTCCCATTTTACCCCCATGGAATAGTATCCAAGTTTCTTTAAGGGAAGGACCCACCAAAATGCGAAATGCCGAAACTTTTAGACTGGAAAACGGGGTCAGAAGCAATTCATCGTCTAACTCGGAGTGTGACAATTATGATGTTACATTCTGTCCTGGTAATTTGTTTGATGGTTTTGTAGCACGGACATCTTTTTCACTGACAAATTTCTTGAATGAATTCCAAGGCTGTAATTTACGCCTATGTCCTCATGTGACCGATAAGACGACTAGCTTTACTAGGTTTATGAGGGATGAAAGCAAGCTTGGGCAGGGCCAAAATGGGATTACCAAATTTAGTTACAAGCACAAGTTATGCTTTGTAAGGGTATTTCTCCATGCTTACAAAGAAGGGTTTTTTGAAGAGGGAGCAGTTGTTTGTGCACCTCAAGTGACTGACATCTCACTCTGGACAAGATCAGAGAGTTTTGATGCAGGACTTCAGGTTCCTCAATCTGCTGTGACATCATATTTCAAAGAGCAATCTTCTGGTAAGTGGGAACTCCAATTACCGGAGGACACTGTCAGTAGAGAATCTCATCGTTGGCCTATAGGCTTTGTGACCACTGGTTTTGTTCGAGGGAGCAAGAAGACAGTGGCACAAGCTTTTTGTGAGGCAGTACTACTTGCTCGTATTAGAGAGGAACAATGGGATATGATGCCAGTTAAACGGAGACGGAAGGAAATATATGTTCTCGTGAGGAATTTGAGATCCTCAGCATATAGACTAGCTCTTGCCACTATCGTCCTGGAAGATCAGGAAGAAGATGTTGAATTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

858

Amino Acids

96.83

Weight (kDa)

8.89

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POP1_N	PF06978	14 - 177	1.5e-09	Ribonucleases P/MRP protein subunit POP1, N-terminal
POPLD	PF08170	507 - 583	2.3e-16	POPLD (NUC188) domain
POP1_C	PF22770	757 - 847	5.3e-08	POP1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	694
Acc36I	ACCTGC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	571
AccBSI	CCGCTC	1 cut(s)	891
AccI	GTMKAC	2 cut(s)	794, 1192
AccII	CGCG	2 cut(s)	79, 932
AciI	CCGC	5 cut(s)	71, 189, 385, 891, 1704
AclI	AACGTT	1 cut(s)	22
AclWI	GGATC	5 cut(s)	958, 1014, 1124, 1137, 2499
AcsI	RAATTY	7 cut(s)	1321, 1403, 1960, 1973, 2087, 2497, 2567
AcuI	CTGAAG	5 cut(s)	69, 1062, 1155, 1236, 2219
AfaI	GTAC	5 cut(s)	334, 532, 1300, 1437, 2415
AfeI	AGCGCT	1 cut(s)	788
AfiI	CCNNNNNNNGG	7 cut(s)	195, 322, 699, 811, 1281, 1545, 2305
AflII	CTTAAG	1 cut(s)	1685
AflIII	ACRYGT	1 cut(s)	367
AjnI	CCWGG	3 cut(s)	1377, 1909, 2541
AjuI	GAANNNNNNNTTGG	4 cut(s)	355, 387, 2043, 2075
AloI	GAACNNNNNNTCC	2 cut(s)	2223, 2255
Alw21I	GWGCWC	1 cut(s)	2179
Alw26I	GTCTC	6 cut(s)	89, 147, 1021, 1119, 1579, 2461
Alw44I	GTGCAC	1 cut(s)	2175
AlwI	GGATC	5 cut(s)	958, 1014, 1124, 1137, 2499
AlwNI	CAGNNNCTG	2 cut(s)	1040, 1184
Aor51HI	AGCGCT	1 cut(s)	788
AoxI	GGCC	4 cut(s)	624, 922, 2068, 2339
ApaLI	GTGCAC	1 cut(s)	2175
ApeKI	GCWGC	2 cut(s)	894, 1037
ApoI	RAATTY	7 cut(s)	1321, 1403, 1960, 1973, 2087, 2497, 2567
AseI	ATTAAT	1 cut(s)	903
Asp700I	GAANNNNTTC	7 cut(s)	386, 448, 470, 1092, 1246, 1861, 1973
AspA2I	CCTAGG	1 cut(s)	424
AspLEI	GCGC	3 cut(s)	43, 79, 789
AspS9I	GGNCC	6 cut(s)	118, 165, 624, 922, 1805, 2068
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	3 cut(s)	118, 165, 1805
AvrII	CCTAGG	1 cut(s)	424
AxyI	CCTNAGG	1 cut(s)	337
BaeGI	GKGCMC	2 cut(s)	989, 2179
BaeI	ACNNNNGTAYC	4 cut(s)	7, 40, 96, 129
BamHI	GGATCC	1 cut(s)	1129
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	2 cut(s)	664, 1588
BauI	CACGAG	1 cut(s)	2489
BbsI	GAAGAC	3 cut(s)	1095, 1224, 2390
Bbv12I	GWGCWC	1 cut(s)	2179
BbvCI	CCTCAGC	1 cut(s)	2509
BbvI	GCAGC	2 cut(s)	906, 1024
BccI	CCATC	8 cut(s)	5, 338, 473, 746, 874, 1273, 1360, 1919
BciT130I	CCWGG	3 cut(s)	1379, 1911, 2543
BciVI	GTATCC	3 cut(s)	8, 813, 1793
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	6 cut(s)	89, 147, 1021, 1119, 1579, 2461
BfaI	CTAG	8 cut(s)	425, 773, 1188, 1196, 1302, 2025, 2034, 2522
BfmI	CTRYAG	3 cut(s)	252, 840, 2343
BfoI	RGCGCY	2 cut(s)	44, 790
BfrI	CTTAAG	1 cut(s)	1685
BfuAI	ACCTGC	1 cut(s)	694
BfuI	GTATCC	3 cut(s)	8, 813, 1793
BisI	GCNGC	5 cut(s)	189, 892, 895, 1038, 1704
BlnI	CCTAGG	1 cut(s)	424
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	5 cut(s)	190, 893, 896, 1039, 1705
BmcAI	AGTACT	1 cut(s)	2415
Bme1390I	CCNGG	3 cut(s)	1379, 1911, 2543
Bme18I	GGWCC	3 cut(s)	118, 165, 1805
BmgT120I	GGNCC	6 cut(s)	118, 165, 624, 922, 1805, 2068
BmiI	GGNNCC	8 cut(s)	451, 573, 625, 661, 1131, 1758, 1807, 2241
BmrFI	CCNGG	3 cut(s)	1379, 1911, 2543
BmsI	GCATC	4 cut(s)	487, 724, 2215, 2442
BpiI	GAAGAC	3 cut(s)	1095, 1224, 2390
BpmI	CTGGAG	3 cut(s)	1032, 1338, 1719
Bpu10I	CCTNAGC	1 cut(s)	2509
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuEI	CTTGAG	4 cut(s)	113, 938, 1561, 2166
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	4 cut(s)	424, 1578, 1772, 1978
BsaWI	WCCGGW	2 cut(s)	138, 2305
BsaXI	ACNNNNNCTCC	2 cut(s)	2154, 2184
Bsc4I	CCNNNNNNNGG	7 cut(s)	195, 322, 699, 811, 1281, 1545, 2305
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	5 cut(s)	1355, 1619, 1845, 2365, 2456
Bse21I	CCTNAGG	1 cut(s)	337
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	3 cut(s)	1379, 1911, 2543
BseDI	CCNNGG	4 cut(s)	424, 1578, 1772, 1978
BseGI	GGATG	3 cut(s)	349, 1336, 2053
BseLI	CCNNNNNNNGG	7 cut(s)	195, 322, 699, 811, 1281, 1545, 2305
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	5 cut(s)	291, 350, 351, 1191, 2523
BseNI	ACTGG	5 cut(s)	1355, 1619, 1845, 2365, 2456
BseRI	GAGGAG	1 cut(s)	959
BseSI	GKGCMC	2 cut(s)	989, 2179
BseXI	GCAGC	2 cut(s)	906, 1024
BseYI	CCCAGC	1 cut(s)	1545
BsgI	GTGCAG	1 cut(s)	1483
Bsh1236I	CGCG	2 cut(s)	79, 932
BshFI	GGCC	4 cut(s)	626, 924, 2070, 2341
BshNI	GGYRCC	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	2179
BsiSI	CCGG	3 cut(s)	121, 139, 2306
BslI	CCNNNNNNNGG	7 cut(s)	195, 322, 699, 811, 1281, 1545, 2305
BsmAI	GTCTC	6 cut(s)	89, 147, 1021, 1119, 1579, 2461
BsmBI	CGTCTC	3 cut(s)	89, 1579, 2461
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	4 cut(s)	626, 924, 2070, 2341
Bso31I	GGTCTC	1 cut(s)	147
Bsp1286I	GDGCHC	4 cut(s)	664, 989, 1588, 2179
Bsp143I	GATC	7 cut(s)	232, 950, 1006, 1129, 2210, 2504, 2548
Bsp1720I	GCTNAGC	1 cut(s)	300
Bsp19I	CCATGG	1 cut(s)	1772
Bsp68I	TCGCGA	1 cut(s)	932
BspACI	CCGC	5 cut(s)	71, 189, 385, 891, 1704
BspANI	GGCC	4 cut(s)	626, 924, 2070, 2341
BspCNI	CTCAG	5 cut(s)	292, 350, 351, 1190, 2522
BspFNI	CGCG	2 cut(s)	79, 932
BspLI	GGNNCC	8 cut(s)	451, 573, 625, 661, 1131, 1758, 1807, 2241
BspMAI	CTGCAG	2 cut(s)	256, 844
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	5 cut(s)	958, 1014, 1124, 1137, 2499
BspT107I	GGYRCC	1 cut(s)	571
BspTI	CTTAAG	1 cut(s)	1685
BspTNI	GGTCTC	1 cut(s)	147
BsrBI	CCGCTC	1 cut(s)	891
BsrDI	GCAATG	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	5 cut(s)	1355, 1619, 1845, 2365, 2456
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	4 cut(s)	424, 1578, 1772, 1978
BssMI	GATC	7 cut(s)	232, 950, 1006, 1129, 2210, 2504, 2548
BssNAI	GTATAC	1 cut(s)	1193
BssSI	CACGAG	1 cut(s)	2489
BssT1I	CCWWGG	4 cut(s)	424, 1578, 1772, 1978
Bst1107I	GTATAC	1 cut(s)	1193
Bst2BI	CACGAG	1 cut(s)	2489
Bst2UI	CCWGG	3 cut(s)	1379, 1911, 2543
Bst4CI	ACNGT	4 cut(s)	109, 1340, 2317, 2389
Bst6I	CTCTTC	3 cut(s)	879, 1356, 2151
BstAFI	CTTAAG	1 cut(s)	1685
BstDEI	CTNAG	7 cut(s)	300, 337, 359, 1065, 1118, 1177, 2509
BstDSI	CCRYGG	1 cut(s)	1772
BstF5I	GGATG	3 cut(s)	349, 1336, 2053
BstFNI	CGCG	2 cut(s)	79, 932
BstH2I	RGCGCY	2 cut(s)	44, 790
BstHHI	GCGC	3 cut(s)	43, 79, 789
BstKTI	GATC	7 cut(s)	235, 953, 1009, 1132, 2213, 2507, 2551
BstMAI	GTCTC	6 cut(s)	89, 147, 1021, 1119, 1579, 2461
BstMBI	GATC	7 cut(s)	232, 950, 1006, 1129, 2210, 2504, 2548
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 382, 497, 839, 1043
BstNI	CCWGG	3 cut(s)	1379, 1911, 2543
BstNSI	RCATGY	8 cut(s)	371, 380, 765, 827, 1141, 1167, 1232, 1309
BstSCI	CCNGG	3 cut(s)	1377, 1909, 2541
BstSFI	CTRYAG	3 cut(s)	252, 840, 2343
BstSLI	GKGCMC	2 cut(s)	989, 2179
BstUI	CGCG	2 cut(s)	79, 932
BstV1I	GCAGC	2 cut(s)	906, 1024
BstV2I	GAAGAC	3 cut(s)	1095, 1224, 2390
BstX2I	RGATCY	2 cut(s)	1129, 2504
BstYI	RGATCY	2 cut(s)	1129, 2504
BstZ17I	GTATAC	1 cut(s)	1193
Bsu36I	CCTNAGG	1 cut(s)	337
BsuI	GTATCC	3 cut(s)	8, 813, 1793
BsuRI	GGCC	4 cut(s)	626, 924, 2070, 2341
BtgI	CCRYGG	1 cut(s)	1772
BtsCI	GGATG	3 cut(s)	349, 1336, 2053
BtsI	GCAGTG	5 cut(s)	168, 837, 1113, 1466, 1675
BtuMI	TCGCGA	1 cut(s)	932
BveI	ACCTGC	1 cut(s)	694
CaiI	CAGNNNCTG	2 cut(s)	1040, 1184
CfoI	GCGC	3 cut(s)	43, 79, 789
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	6 cut(s)	118, 165, 624, 922, 1805, 2068
CpoI	CGGWCCG	1 cut(s)	118
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	5 cut(s)	333, 531, 1299, 1436, 2414
CspCI	CAANNNNNGTGG	2 cut(s)	2347, 2382
CspI	CGGWCCG	1 cut(s)	118
CviQI	GTAC	5 cut(s)	333, 531, 1299, 1436, 2414
DdeI	CTNAG	7 cut(s)	300, 337, 359, 1065, 1118, 1177, 2509
DpnI	GATC	7 cut(s)	234, 952, 1008, 1131, 2212, 2506, 2550
DpnII	GATC	7 cut(s)	232, 950, 1006, 1129, 2210, 2504, 2548
Eam1104I	CTCTTC	3 cut(s)	879, 1356, 2151
EarI	CTCTTC	3 cut(s)	879, 1356, 2151
Eco130I	CCWWGG	4 cut(s)	424, 1578, 1772, 1978
Eco24I	GRGCYC	2 cut(s)	664, 1588
Eco31I	GGTCTC	1 cut(s)	147
Eco47I	GGWCC	3 cut(s)	118, 165, 1805
Eco47III	AGCGCT	1 cut(s)	788
Eco57I	CTGAAG	5 cut(s)	69, 1062, 1155, 1236, 2219
Eco81I	CCTNAGG	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	1805
EcoRI	GAATTC	1 cut(s)	1973
EcoRII	CCWGG	3 cut(s)	1377, 1909, 2541
EcoT14I	CCWWGG	4 cut(s)	424, 1578, 1772, 1978
EcoT38I	GRGCYC	2 cut(s)	664, 1588
ErhI	CCWWGG	4 cut(s)	424, 1578, 1772, 1978
Esp3I	CGTCTC	3 cut(s)	89, 1579, 2461
FalI	AAGNNNNNCTT	8 cut(s)	229, 261, 1254, 1286, 1710, 1742, 2096, 2128
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	2 cut(s)	794, 1192
Fnu4HI	GCNGC	5 cut(s)	189, 892, 895, 1038, 1704
FokI	GGATG	3 cut(s)	356, 1343, 2060
FriOI	GRGCYC	2 cut(s)	664, 1588
Fsp4HI	GCNGC	5 cut(s)	189, 892, 895, 1038, 1704
FspBI	CTAG	8 cut(s)	425, 773, 1188, 1196, 1302, 2025, 2034, 2522
GlaI	GCGC	3 cut(s)	42, 78, 788
GluI	GCNGC	5 cut(s)	189, 892, 895, 1038, 1704
GsaI	CCCAGC	1 cut(s)	1549
GsuI	CTGGAG	3 cut(s)	1032, 1338, 1719
HaeII	RGCGCY	2 cut(s)	44, 790
HaeIII	GGCC	4 cut(s)	626, 924, 2070, 2341
HapII	CCGG	3 cut(s)	121, 139, 2306
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	3 cut(s)	43, 79, 789
Hin6I	GCGC	3 cut(s)	41, 77, 787
HinP1I	GCGC	3 cut(s)	41, 77, 787
HincII	GTYRAC	1 cut(s)	1336
HindII	GTYRAC	1 cut(s)	1336
HindIII	AAGCTT	3 cut(s)	401, 2057, 2397
HinfI	GANTC	7 cut(s)	539, 1055, 1122, 1175, 1421, 1564, 2327
HpaI	GTTAAC	1 cut(s)	1336
HpaII	CCGG	3 cut(s)	121, 139, 2306
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	5 cut(s)	390, 795, 1193, 1336, 2177
Hpy188III	TCNNGA	9 cut(s)	453, 463, 773, 931, 1049, 1966, 2203, 2491, 2552
Hpy8I	GTNNAC	5 cut(s)	390, 795, 1193, 1336, 2177
Hpy99I	CGWCG	2 cut(s)	285, 294
HpyCH4III	ACNGT	4 cut(s)	109, 1340, 2317, 2389
HpyCH4IV	ACGT	2 cut(s)	22, 1629
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 382, 497, 839, 1043
HpyF3I	CTNAG	7 cut(s)	300, 337, 359, 1065, 1118, 1177, 2509
HpySE526I	ACGT	2 cut(s)	22, 1629
HspAI	GCGC	3 cut(s)	41, 77, 787
Ksp22I	TGATCA	1 cut(s)	232
KspAI	GTTAAC	1 cut(s)	1336
Kzo9I	GATC	7 cut(s)	232, 950, 1006, 1129, 2210, 2504, 2548
LmnI	GCTCC	5 cut(s)	105, 659, 1051, 2162, 2376
Lsp1109I	GCAGC	2 cut(s)	906, 1024
LweI	GCATC	4 cut(s)	487, 724, 2215, 2442
MaeI	CTAG	8 cut(s)	425, 773, 1188, 1196, 1302, 2025, 2034, 2522
MaeII	ACGT	2 cut(s)	22, 1629
MalI	GATC	7 cut(s)	234, 952, 1008, 1131, 2212, 2506, 2550
MbiI	CCGCTC	1 cut(s)	891
MboI	GATC	7 cut(s)	232, 950, 1006, 1129, 2210, 2504, 2548
MfeI	CAATTG	2 cut(s)	521, 678
MflI	RGATCY	2 cut(s)	1129, 2504
MhlI	GDGCHC	4 cut(s)	664, 989, 1588, 2179
MlyI	GAGTC	2 cut(s)	1131, 1169
MmeI	TCCRAC	1 cut(s)	272
MroXI	GAANNNNTTC	7 cut(s)	386, 448, 470, 1092, 1246, 1861, 1973
MslI	CAYNNNNRTG	2 cut(s)	1678, 1814
MspA1I	CMGCKG	1 cut(s)	1037
MspCI	CTTAAG	1 cut(s)	1685
MspI	CCGG	3 cut(s)	121, 139, 2306
MspR9I	CCNGG	3 cut(s)	1379, 1911, 2543
MunI	CAATTG	2 cut(s)	521, 678
Mva1269I	GAATGC	1 cut(s)	285
MvaI	CCWGG	3 cut(s)	1379, 1911, 2543
MvnI	CGCG	2 cut(s)	79, 932
MwoI	GCNNNNNNNGC	5 cut(s)	251, 382, 497, 839, 1043
NcoI	CCATGG	1 cut(s)	1772
NdeII	GATC	7 cut(s)	232, 950, 1006, 1129, 2210, 2504, 2548
NlaIV	GGNNCC	8 cut(s)	451, 573, 625, 661, 1131, 1758, 1807, 2241
NmuCI	GTSAC	6 cut(s)	1625, 1883, 2008, 2185, 2254, 2353
NruI	TCGCGA	1 cut(s)	932
NspI	RCATGY	8 cut(s)	371, 380, 765, 827, 1141, 1167, 1232, 1309
PaeI	GCATGC	3 cut(s)	380, 1232, 1309
PaqCI	CACCTGC	1 cut(s)	694
PciI	ACATGT	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	2 cut(s)	211, 286
PctI	GAATGC	1 cut(s)	285
PdmI	GAANNNNTTC	7 cut(s)	386, 448, 470, 1092, 1246, 1861, 1973
PfeI	GAWTC	5 cut(s)	539, 1055, 1421, 1564, 2327
PflFI	GACNNNGTC	1 cut(s)	2315
PfoI	TCCNGGA	1 cut(s)	2541
PkrI	GCNGC	5 cut(s)	190, 893, 896, 1039, 1705
PleI	GAGTC	2 cut(s)	1130, 1169
PpsI	GAGTC	2 cut(s)	1130, 1169
PpuMI	RGGWCCY	1 cut(s)	1805
PscI	ACATGT	1 cut(s)	367
PshBI	ATTAAT	1 cut(s)	903
Psp1406I	AACGTT	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	1805
Psp6I	CCWGG	3 cut(s)	1377, 1909, 2541
PspFI	CCCAGC	1 cut(s)	1545
PspGI	CCWGG	3 cut(s)	1377, 1909, 2541
PspN4I	GGNNCC	8 cut(s)	451, 573, 625, 661, 1131, 1758, 1807, 2241
PspPI	GGNCC	6 cut(s)	118, 165, 624, 922, 1805, 2068
PspPPI	RGGWCCY	1 cut(s)	1805
PsrI	GAACNNNNNNTAC	2 cut(s)	2286, 2318
PstI	CTGCAG	2 cut(s)	256, 844
PstNI	CAGNNNCTG	2 cut(s)	1040, 1184
PsuI	RGATCY	2 cut(s)	1129, 2504
PsyI	GACNNNGTC	1 cut(s)	2315
PvuII	CAGCTG	1 cut(s)	1037
RruI	TCGCGA	1 cut(s)	932
RsaI	GTAC	5 cut(s)	334, 532, 1300, 1437, 2415
RsaNI	GTAC	5 cut(s)	333, 531, 1299, 1436, 2414
RseI	CAYNNNNRTG	2 cut(s)	1678, 1814
Rsr2I	CGGWCCG	1 cut(s)	118
RsrII	CGGWCCG	1 cut(s)	118
SatI	GCNGC	5 cut(s)	189, 892, 895, 1038, 1704
Sau3AI	GATC	7 cut(s)	232, 950, 1006, 1129, 2210, 2504, 2548
Sau96I	GGNCC	6 cut(s)	118, 165, 624, 922, 1805, 2068
ScaI	AGTACT	1 cut(s)	2415
SchI	GAGTC	2 cut(s)	1131, 1169
ScrFI	CCNGG	3 cut(s)	1379, 1911, 2543
SduI	GDGCHC	4 cut(s)	664, 989, 1588, 2179
SfaNI	GCATC	4 cut(s)	487, 724, 2215, 2442
SfcI	CTRYAG	3 cut(s)	252, 840, 2343
SinI	GGWCC	3 cut(s)	118, 165, 1805
SmiMI	CAYNNNNRTG	2 cut(s)	1678, 1814
SmlI	CTYRAG	5 cut(s)	92, 917, 1540, 1685, 2181
SmoI	CTYRAG	5 cut(s)	92, 917, 1540, 1685, 2181
SphI	GCATGC	3 cut(s)	380, 1232, 1309
SsiI	CCGC	5 cut(s)	71, 189, 385, 891, 1704
SspMI	CTAG	8 cut(s)	425, 773, 1188, 1196, 1302, 2025, 2034, 2522
StyD4I	CCNGG	3 cut(s)	1377, 1909, 2541
StyI	CCWWGG	4 cut(s)	424, 1578, 1772, 1978
TaaI	ACNGT	4 cut(s)	109, 1340, 2317, 2389
TaiI	ACGT	2 cut(s)	25, 1632
TaqI	TCGA	5 cut(s)	46, 205, 1277, 1293, 2371
TaqII	GACCGA	1 cut(s)	2027
TatI	WGTACW	1 cut(s)	2413
TauI	GCSGC	3 cut(s)	191, 894, 1706
TfiI	GAWTC	5 cut(s)	539, 1055, 1421, 1564, 2327
TseFI	GTSAC	6 cut(s)	1625, 1883, 2008, 2185, 2254, 2353
TseI	GCWGC	2 cut(s)	894, 1037
Tsp45I	GTSAC	6 cut(s)	1625, 1883, 2008, 2185, 2254, 2353
TspDTI	ATGAA	9 cut(s)	24, 308, 638, 1132, 1434, 1611, 1854, 1986, 2064
TspGWI	ACGGA	5 cut(s)	237, 1515, 1954, 2479, 2485
Tth111I	GACNNNGTC	1 cut(s)	2315
Vha464I	CTTAAG	1 cut(s)	1685
VneI	GTGCAC	1 cut(s)	2175
VpaK11BI	GGWCC	3 cut(s)	118, 165, 1805
VspI	ATTAAT	1 cut(s)	903
XapI	RAATTY	7 cut(s)	1321, 1403, 1960, 1973, 2087, 2497, 2567
XbaI	TCTAGA	1 cut(s)	772
XceI	RCATGY	8 cut(s)	371, 380, 765, 827, 1141, 1167, 1232, 1309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2539
XmaJI	CCTAGG	1 cut(s)	424
XmiI	GTMKAC	2 cut(s)	794, 1192
XmnI	GAANNNNTTC	7 cut(s)	386, 448, 470, 1092, 1246, 1861, 1973
XspI	CTAG	8 cut(s)	425, 773, 1188, 1196, 1302, 2025, 2034, 2522
ZrmI	AGTACT	1 cut(s)	2415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.