Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Forward (+)

18650197 .. 18654739

Gene Structure 4543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G008590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCAGTGGGTGTCGTTGGCTTGTTTTCTGACAATTTTTTTTCTTGTTTCCAGCCTACAGGAGTACGCGCAATTACTTTCCACCCTGACGGGAGGACAATATTTTCTGGATTGGATGACAGTTTATTCATGGGAGCCTGTAATATCCCATGATTCTGTTGATATGGGATGGTCAAGACTTGCTGACGTATGCATTCATGACGGAAGCTGTTGGCATGCTCTTACTATCGAAATTCTATTGGTCTGGGTTGCGGATGTATCGATGGAAGAGAGCGGCAGCATGATTAATTTTTTCTCACTTGAGGGCCAACTCGCGAAATTAGAAGTTATGGGATCAAAAGCATTTCAACTCCTCCAAAGGACATTGTGCCCTAAGAAGGATCATACTTGGGCATTGGAGAGACATTCAGCTGCTGAAGCTCCAGATGATTCCCAATCTAAGACTATACTTGAAAATGAGGAAGACATTCCTTCTCATGCAGTGTTGTCTCTTAGAGTCAAGGATCCTCGCATGTTCATAGAGAAACGAAAGACTGCATGTGCTTCAGACTTAGGTTCTGCTAGTATACTAGCTGATGAACAAGGAACTGAAGACAAAGAGCTGCTGTCATTACTTTCCTCGATGGGTTCAGAACTCGAAGGTACTAGCATGCTCGCAGAAAAGAATTTGTGGGATGTTAACAGTGGTATAAGTCCTCCAGTGGAAGAGATGGTTCTTTGCCAGGAAAGATATGACCAGAATAAAAAATTCTTCTGCCTTGATGAATCAAGTTCAAGGGTACTAAATACTTCAACCAATTTGCACTGCAGTTCTTGTCCTGTTCTGCTTTTGAAAAATGACAACGGAAGGGGCTTGCATATTGGTTGGTCTGTAATTCTACCCTTGAGCTGGGTCAGGGCATTTTGGATTCCTCTCGTCTCCAAGGGGGCTCATGTGATAGGTTTAAGAGAGAGGCACTGGATTTCATGTGACGTAGGATTGCCATGTTTTCCTTCGAATTTCCCTGTTGCAGTGCATATTTATGCCTTAAGGAAACTGAAAGTGCCGCCTCCAATGTTAAAGAGCAACTTCGTCCTCCAGCACAAAGACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

364

Amino Acids

40.89

Weight (kDa)

5.38

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POPLD	PF08170	288 - 337	3.4e-11	POPLD (NUC188) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	273
AccI	GTMKAC	1 cut(s)	565
AccII	CGCG	2 cut(s)	68, 314
AciI	CCGC	3 cut(s)	251, 273, 1046
AclWI	GGATC	4 cut(s)	340, 387, 497, 510
AcsI	RAATTY	4 cut(s)	231, 664, 746, 997
AcuI	CTGAAG	3 cut(s)	435, 528, 609
AfaI	GTAC	3 cut(s)	65, 643, 780
AfiI	CCNNNNNNNGG	2 cut(s)	376, 888
AflII	CTTAAG	1 cut(s)	1027
AgsI	TTSAA	5 cut(s)	347, 452, 774, 792, 832
AjnI	CCWGG	1 cut(s)	720
AluBI	AGCT	6 cut(s)	207, 410, 419, 572, 601, 888
AluI	AGCT	6 cut(s)	207, 410, 419, 572, 601, 888
Alw26I	GTCTC	3 cut(s)	394, 492, 922
AlwI	GGATC	4 cut(s)	340, 387, 497, 510
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	3 cut(s)	276, 410, 601
ApoI	RAATTY	4 cut(s)	231, 664, 746, 997
AseI	ATTAAT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	304
AsuII	TTCGAA	1 cut(s)	995
BaeGI	GKGCMC	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	931
BbsI	GAAGAC	2 cut(s)	468, 597
BbvI	GCAGC	3 cut(s)	288, 397, 588
BccI	CCATC	4 cut(s)	162, 256, 616, 703
BciT130I	CCWGG	1 cut(s)	722
BcoDI	GTCTC	3 cut(s)	394, 492, 922
BfaI	CTAG	3 cut(s)	561, 569, 645
BfmI	CTRYAG	2 cut(s)	56, 805
BfrI	CTTAAG	1 cut(s)	1027
BisI	GCNGC	5 cut(s)	274, 277, 411, 602, 1046
BlsI	GCNGC	5 cut(s)	275, 278, 412, 603, 1047
Bme1390I	CCNGG	1 cut(s)	722
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	135, 504
BmrFI	CCNGG	1 cut(s)	722
BpiI	GAAGAC	2 cut(s)	468, 597
BpmI	CTGGAG	3 cut(s)	405, 681, 1061
Bpu14I	TTCGAA	1 cut(s)	995
BpuEI	CTTGAG	2 cut(s)	320, 904
Bsa29I	ATCGAT	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	921
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 888
Bse1I	ACTGG	2 cut(s)	698, 962
BseBI	CCWGG	1 cut(s)	722
BseCI	ATCGAT	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	921
BseGI	GGATG	4 cut(s)	120, 173, 259, 679
BseLI	CCNNNNNNNGG	2 cut(s)	376, 888
BseNI	ACTGG	2 cut(s)	698, 962
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	288, 397, 588
BseYI	CCCAGC	1 cut(s)	888
Bsh1236I	CGCG	2 cut(s)	68, 314
BshFI	GGCC	1 cut(s)	306
BshVI	ATCGAT	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	376, 888
BsmAI	GTCTC	3 cut(s)	394, 492, 922
BsmBI	CGTCTC	1 cut(s)	922
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	306
Bsp119I	TTCGAA	1 cut(s)	995
Bsp1286I	GDGCHC	2 cut(s)	371, 931
Bsp143I	GATC	3 cut(s)	332, 379, 502
Bsp68I	TCGCGA	1 cut(s)	314
BspACI	CCGC	3 cut(s)	251, 273, 1046
BspANI	GGCC	1 cut(s)	306
BspDI	ATCGAT	1 cut(s)	260
BspFNI	CGCG	2 cut(s)	68, 314
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	135, 504
BspMAI	CTGCAG	1 cut(s)	809
BspPI	GGATC	4 cut(s)	340, 387, 497, 510
BspT104I	TTCGAA	1 cut(s)	995
BspTI	CTTAAG	1 cut(s)	1027
BsrBI	CCGCTC	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	698, 962
BssECI	CCNNGG	1 cut(s)	921
BssMI	GATC	3 cut(s)	332, 379, 502
BssNAI	GTATAC	1 cut(s)	566
BssT1I	CCWWGG	1 cut(s)	921
Bst1107I	GTATAC	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	2 cut(s)	121, 683
Bst6I	CTCTTC	2 cut(s)	261, 699
BstAFI	CTTAAG	1 cut(s)	1027
BstBI	TTCGAA	1 cut(s)	995
BstC8I	GCNNGC	4 cut(s)	216, 650, 654, 854
BstDEI	CTNAG	4 cut(s)	372, 438, 491, 550
BstF5I	GGATG	4 cut(s)	120, 173, 259, 679
BstFNI	CGCG	2 cut(s)	68, 314
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	3 cut(s)	335, 382, 505
BstMAI	GTCTC	3 cut(s)	394, 492, 922
BstMBI	GATC	3 cut(s)	332, 379, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	1 cut(s)	722
BstNSI	RCATGY	4 cut(s)	218, 514, 540, 652
BstSCI	CCNGG	1 cut(s)	720
BstSFI	CTRYAG	2 cut(s)	56, 805
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	2 cut(s)	68, 314
BstV1I	GCAGC	3 cut(s)	288, 397, 588
BstV2I	GAAGAC	2 cut(s)	468, 597
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BstZ17I	GTATAC	1 cut(s)	566
Bsu15I	ATCGAT	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	306
BsuTUI	ATCGAT	1 cut(s)	260
BtsCI	GGATG	4 cut(s)	120, 173, 259, 679
BtsI	GCAGTG	4 cut(s)	11, 486, 802, 1017
BtsIMutI	CAGTG	7 cut(s)	11, 486, 688, 705, 802, 955, 1017
BtuMI	TCGCGA	1 cut(s)	314
Cac8I	GCNNGC	4 cut(s)	216, 650, 654, 854
CaiI	CAGNNNCTG	1 cut(s)	413
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	260
Csp6I	GTAC	3 cut(s)	64, 642, 779
CviQI	GTAC	3 cut(s)	64, 642, 779
DdeI	CTNAG	4 cut(s)	372, 438, 491, 550
DpnI	GATC	3 cut(s)	334, 381, 504
DpnII	GATC	3 cut(s)	332, 379, 502
Eam1104I	CTCTTC	2 cut(s)	261, 699
EarI	CTCTTC	2 cut(s)	261, 699
Eco130I	CCWWGG	1 cut(s)	921
Eco24I	GRGCYC	1 cut(s)	931
Eco57I	CTGAAG	3 cut(s)	435, 528, 609
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	921
EcoT22I	ATGCAT	1 cut(s)	194
EcoT38I	GRGCYC	1 cut(s)	931
ErhI	CCWWGG	1 cut(s)	921
Esp3I	CGTCTC	1 cut(s)	922
FalI	AAGNNNNNCTT	2 cut(s)	1052, 1084
FblI	GTMKAC	1 cut(s)	565
Fnu4HI	GCNGC	5 cut(s)	274, 277, 411, 602, 1046
FokI	GGATG	4 cut(s)	127, 180, 266, 686
FriOI	GRGCYC	1 cut(s)	931
Fsp4HI	GCNGC	5 cut(s)	274, 277, 411, 602, 1046
FspBI	CTAG	3 cut(s)	561, 569, 645
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	5 cut(s)	274, 277, 411, 602, 1046
GsaI	CCCAGC	1 cut(s)	892
GsuI	CTGGAG	3 cut(s)	405, 681, 1061
HaeIII	GGCC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HinfI	GANTC	5 cut(s)	152, 428, 495, 764, 907
HpaI	GTTAAC	1 cut(s)	679
Hpy166II	GTNNAC	2 cut(s)	566, 679
Hpy188I	TCNGA	3 cut(s)	30, 547, 631
Hpy188III	TCNNGA	5 cut(s)	107, 174, 197, 313, 422
Hpy8I	GTNNAC	2 cut(s)	566, 679
HpyAV	CCTTC	5 cut(s)	370, 480, 632, 840, 1002
HpyCH4III	ACNGT	2 cut(s)	121, 683
HpyCH4IV	ACGT	2 cut(s)	186, 972
HpyCH4V	TGCA	9 cut(s)	4, 192, 479, 536, 802, 807, 856, 1010, 1015
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	4 cut(s)	372, 438, 491, 550
HpySE526I	ACGT	2 cut(s)	186, 972
HspAI	GCGC	1 cut(s)	68
KspAI	GTTAAC	1 cut(s)	679
Kzo9I	GATC	3 cut(s)	332, 379, 502
LmnI	GCTCC	2 cut(s)	133, 424
Lsp1109I	GCAGC	3 cut(s)	288, 397, 588
MaeI	CTAG	3 cut(s)	561, 569, 645
MaeII	ACGT	2 cut(s)	186, 972
MaeIII	GTNAC	1 cut(s)	968
MalI	GATC	3 cut(s)	334, 381, 504
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	3 cut(s)	332, 379, 502
MboII	GAAGA	5 cut(s)	278, 473, 602, 716, 742
MflI	RGATCY	1 cut(s)	502
MhlI	GDGCHC	2 cut(s)	371, 931
MlyI	GAGTC	1 cut(s)	504
Mph1103I	ATGCAT	1 cut(s)	194
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	5 cut(s)	285, 678, 944, 1028, 1058
MslI	CAYNNNNRTG	1 cut(s)	1020
MspA1I	CMGCKG	1 cut(s)	410
MspCI	CTTAAG	1 cut(s)	1027
MspR9I	CCNGG	1 cut(s)	722
Mva1269I	GAATGC	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	2 cut(s)	68, 314
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	3 cut(s)	332, 379, 502
NlaIV	GGNNCC	2 cut(s)	135, 504
NmuCI	GTSAC	1 cut(s)	968
NruI	TCGCGA	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	194
NspI	RCATGY	4 cut(s)	218, 514, 540, 652
NspV	TTCGAA	1 cut(s)	995
PaeI	GCATGC	2 cut(s)	218, 652
PagI	TCATGA	1 cut(s)	196
PctI	GAATGC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	152, 428, 764, 907
PkrI	GCNGC	5 cut(s)	275, 278, 412, 603, 1047
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
PshBI	ATTAAT	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	720
PspFI	CCCAGC	1 cut(s)	888
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	2 cut(s)	135, 504
PspPI	GGNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	809
PstNI	CAGNNNCTG	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	502
PvuII	CAGCTG	1 cut(s)	410
RruI	TCGCGA	1 cut(s)	314
RsaI	GTAC	3 cut(s)	65, 643, 780
RsaNI	GTAC	3 cut(s)	64, 642, 779
RseI	CAYNNNNRTG	1 cut(s)	1020
SaqAI	TTAA	5 cut(s)	285, 678, 944, 1028, 1058
SatI	GCNGC	5 cut(s)	274, 277, 411, 602, 1046
Sau3AI	GATC	3 cut(s)	332, 379, 502
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	504
ScrFI	CCNGG	1 cut(s)	722
SduI	GDGCHC	2 cut(s)	371, 931
SfcI	CTRYAG	2 cut(s)	56, 805
SfuI	TTCGAA	1 cut(s)	995
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SmlI	CTYRAG	3 cut(s)	299, 883, 1027
SmoI	CTYRAG	3 cut(s)	299, 883, 1027
SphI	GCATGC	2 cut(s)	218, 652
SsiI	CCGC	3 cut(s)	251, 273, 1046
SspI	AATATT	1 cut(s)	101
SspMI	CTAG	3 cut(s)	561, 569, 645
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	2 cut(s)	121, 683
TaiI	ACGT	2 cut(s)	189, 975
TaqI	TCGA	5 cut(s)	228, 260, 620, 636, 995
TauI	GCSGC	2 cut(s)	276, 1048
TfiI	GAWTC	4 cut(s)	152, 428, 764, 907
Tru1I	TTAA	5 cut(s)	285, 678, 944, 1028, 1058
Tru9I	TTAA	5 cut(s)	285, 678, 944, 1028, 1058
TscAI	CASTG	6 cut(s)	486, 688, 705, 809, 962, 1017
TseFI	GTSAC	1 cut(s)	968
TseI	GCWGC	3 cut(s)	276, 410, 601
Tsp45I	GTSAC	1 cut(s)	968
TspDTI	ATGAA	6 cut(s)	117, 185, 505, 591, 777, 954
TspGWI	ACGGA	2 cut(s)	216, 858
TspRI	CASTG	6 cut(s)	486, 688, 705, 809, 962, 1017
Vha464I	CTTAAG	1 cut(s)	1027
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	4 cut(s)	231, 664, 746, 997
XceI	RCATGY	4 cut(s)	218, 514, 540, 652
XmiI	GTMKAC	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	3 cut(s)	561, 569, 645
Zsp2I	ATGCAT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.