RchiOBHm_Chr3g0487391

Ribonucleases P/MRP protein subunit POP1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
34605080 .. 34610582
5503 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45182

Sequence Viewer

Length: 2580 bp
ATGGCTACCGATGGATACAAACGTTCACAAGTTTCATCAGCTCCGCCTCGAAAATTAAGTGTCCAAAAGTTTGCGGAAGCGCGAGCTTCAGAACTTGAGACGCTCCACACAGTTGTGTCGGACCGACTGAACAATGATTTCCGGTCTCAAAGAAGCAAGAGAAGAAGGACCACTGCTTATGACAATCAAGCCGCAAAAAGGAGATGTCGAAAAAAGCGAAAGCACGGAGTAGGTGATCAATGCAATGCTTTGCCTGCAGAGAAAGATGACAAGAATGTTCCTCGTCGCATTCGTCGGAGAGCTGAGCTTAAAAAGAACCTTCATACGGGTTTTTGTACCTCAGGGGATGGGACAAAGAGGCTTAGAACACATGTTTGGCATGCGAAGCGGTTCACGATGACAAAGCTCTGGGGTTATTATCTTCCCCTAGGATTGCAGGGCAGGGGAAGGGGTTCCAGAGCTGTCCTGAAATGGTTCAAAGATGGAGTGTTTGCCCATGATGCAAGCTATCATGTAGCTATGCAATTGGAGGGTACAGAGGAATCATTACTATCAGTGTTAAGAATGGTATTGGTGCCTTCTCCATCAGCTCGTTCCGAAGATATTTCCCGTTCCATTATTTCAGGGGCCATATATGACACTGCTATGCTTCATCAGTTGGGAGCCCCATGTTCAACCCCAATTGCACCTGCAACCTATATGTGGCGACCCTCTTGCCAACAGGATAGAGATAATGATGCTTCTGCTGTCTATGATGGTGGTGCATGTAATGGTCTAGAGGTTAAAGAACGCTCGTCTACCTTTCGCCAGCTTTGGGTGTGGATACATGCTTCTGCTTTCACTGCAGGGTATGATACTCTCAAATTAGCTTGCCAAAAAGAGATGGAAGAGAGTGGCAGCATGATTAATTTTTTCTCACTTGAGGGCCAACTCGCGAAATTAGAAGTTATGGGATCAAAAGCATTTCAACTCCTCCAAAGGACATTGTGCCCTGTTACAAGAAGAAAGGATCATACTCAGGCATTGAAGAGACATTCAGCTGCTGAAGCTCCAGATGATTCCCAATCTAAGACTATACTTGAAAATGAGGAAGACATTCCTTCTCATGCAGTGTTGTCTCTTAGAGTCAAGGATCCTCGCATGTTCATAGAGAAACGAAAGACTGCATGTGCTTCAGACTCAGGTTCTGCTAGTATACTAGCTGATGAACAAGGAACTGAAGACAAAGAGCATGCTGTCAGTGGAATTATTTCAGACAAGAAGAAAGAGTTACTTTCCTTGATGGGGTCAGAACTTGAAGGTACTAGCATGCTCGCAGAAAAGAATTTGTGGGATGTTAACAGTGGTATAAGTCCTCCAGTGGAAGAGATGGTTCTTTGCCAGGAAAGATATGACCAGAATAAAAAATTCTTCTGCCTTGATGAATCAAGTTCAAGGGTACTACATACTTCAACCAATTTGCAGTGCAGTTCTTGTCCTGTTCTGCTTTTGAAAAATGACAACGGAAGGGGCTTGCATATTGGTTGGTCTGTAATTCTACCCTTGAGCTGGGTCAGGGCATTTTGGATTCCTCTCGTCTCCAAGGGGGCTCATGTGATAGGTTTGAGAGAGAGGCACTGGATTTCATGTGACGTAGGATTGCCATGTTTTCCTTTGGATTTCCCTGATTGCAGTGCATATTTATGCCTTAAGGAAACTGAAAGTACCGCCTCCAATGTTAAAGAGGAACTTCGTCCTCCAGCACAAAGACCTTTGAGGGTTCCCATTTTACCCCCATGGAATAGTATCCAAGTTTCTTTAAGGGAAGGACCCACCAAAATGCGAAATGCCGAAACTTTTAGACTGGAAAACGGGGTCAGAAGCAATTCATCATCTAACTCGGAGTGTGACAATTATGATGTTACATTCTGTCCTGGTAATTTGTTTGATGGTTTTGTAGCACGGACATCTTTTTCACTGACAAATTTCTTGAATGAATTCCAAGGCTGTAATTTACGCCTATGTCCTCATGTGACCGATAAGACGACTAGCTTTACTAGGTTTATGAGGGATGAAAGCAAGCTTGGGCAGGGCCAAAATGGGATTACCAAATTTAGTTACAAGCACAAGTTATGCTTTGTAAGGGTATTTCTCCATGCTTACAAAGAAGGGTTTTTTGAAGAGGGAGCAGTTGTTTGTGCACCTCAAGTGACTGACATCTCACTCTGGACAAGATCAGAGAGTTTTGATGCAGTACTTCAGGTTCCTCAATCTGCTGTGACATCGTATTTCAAAGAGCAATCTTCTGGTAAGTGGGAACTCCAATTACCAGAGGACACTGTCAGTAGAGAATCTCATCGTTGGCCTATAGGCTTTGTGACCACTGGTTTTGTTCGAGGGAGCAAGAAGACAGTGGCACAAGCTTTTTGTGAGGCAGTACTACTTGCTCATATTAGAGGGGAACAATGGGATATGATGCCAGTTAAACGGAGACGGAAGGAAATATATGTCCTTGTGAGGAATTTGAGATCCTCAGCATATAGACTAGCTCTTGCCACTATCGTCCTGGAAGATCAGGAAGAAGATGTTGAATTTCTGTGA

Protein Analysis

859

Amino Acids

96.9

Weight (kDa)

8.91

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POP1_N PF06978 121 - 178 2.2e-10 Ribonucleases P/MRP protein subunit POP1, N-terminal
POPLD PF08170 508 - 584 4.5e-16 POPLD (NUC188) domain
POP1_C PF22770 758 - 848 7.3e-08 POP1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 697
Acc36I ACCTGC 1 cut(s) 697
AccB1I GGYRCC 1 cut(s) 574
AccI GTMKAC 2 cut(s) 797, 1195
AccII CGCG 2 cut(s) 82, 935
AciI CCGC 5 cut(s) 44, 74, 192, 388, 1707
AclI AACGTT 1 cut(s) 22
AclWI GGATC 5 cut(s) 961, 1017, 1127, 1140, 2502
AcsI RAATTY 7 cut(s) 1324, 1406, 1963, 1976, 2090, 2500, 2570
AcuI CTGAAG 5 cut(s) 72, 1065, 1158, 1239, 2222
AfaI GTAC 7 cut(s) 337, 535, 1303, 1440, 1705, 2235, 2418
AfiI CCNNNNNNNGG 6 cut(s) 198, 325, 702, 814, 1284, 1548
AflII CTTAAG 1 cut(s) 1688
AflIII ACRYGT 1 cut(s) 370
AjnI CCWGG 3 cut(s) 1380, 1912, 2544
AjuI GAANNNNNNNTTGG 4 cut(s) 358, 390, 2046, 2078
AleI CACNNNNGTG 1 cut(s) 113
Alw21I GWGCWC 1 cut(s) 2182
Alw26I GTCTC 6 cut(s) 92, 150, 1024, 1122, 1582, 2464
Alw44I GTGCAC 1 cut(s) 2178
AlwI GGATC 5 cut(s) 961, 1017, 1127, 1140, 2502
AlwNI CAGNNNCTG 2 cut(s) 1043, 1187
AoxI GGCC 4 cut(s) 627, 925, 2071, 2342
ApaLI GTGCAC 1 cut(s) 2178
ApeKI GCWGC 2 cut(s) 897, 1040
ApoI RAATTY 7 cut(s) 1324, 1406, 1963, 1976, 2090, 2500, 2570
AseI ATTAAT 1 cut(s) 906
Asp700I GAANNNNTTC 7 cut(s) 389, 451, 473, 1095, 1249, 1864, 1976
AspA2I CCTAGG 1 cut(s) 427
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 6 cut(s) 121, 168, 627, 925, 1808, 2071
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 3 cut(s) 121, 168, 1808
AvrII CCTAGG 1 cut(s) 427
AxyI CCTNAGG 1 cut(s) 340
BaeGI GKGCMC 2 cut(s) 992, 2182
BaeI ACNNNNGTAYC 2 cut(s) 7, 40
BamHI GGATCC 1 cut(s) 1132
BanI GGYRCC 1 cut(s) 574
BanII GRGCYC 2 cut(s) 667, 1591
BbsI GAAGAC 3 cut(s) 1098, 1227, 2393
Bbv12I GWGCWC 1 cut(s) 2182
BbvCI CCTCAGC 1 cut(s) 2512
BbvI GCAGC 2 cut(s) 909, 1027
BccI CCATC 9 cut(s) 5, 341, 476, 592, 749, 877, 1276, 1363, 1922
BcgI CGANNNNNNTGC 2 cut(s) 696, 730
BciT130I CCWGG 3 cut(s) 1382, 1914, 2546
BciVI GTATCC 3 cut(s) 8, 816, 1796
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 6 cut(s) 92, 150, 1024, 1122, 1582, 2464
BfaI CTAG 8 cut(s) 428, 776, 1191, 1199, 1305, 2028, 2037, 2525
BfmI CTRYAG 3 cut(s) 255, 843, 2346
BfrI CTTAAG 1 cut(s) 1688
BfuAI ACCTGC 1 cut(s) 697
BfuI GTATCC 3 cut(s) 8, 816, 1796
BisI GCNGC 3 cut(s) 192, 898, 1041
BlnI CCTAGG 1 cut(s) 427
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 3 cut(s) 193, 899, 1042
BmcAI AGTACT 2 cut(s) 2235, 2418
Bme1390I CCNGG 3 cut(s) 1382, 1914, 2546
Bme18I GGWCC 3 cut(s) 121, 168, 1808
BmgT120I GGNCC 6 cut(s) 121, 168, 627, 925, 1808, 2071
BmiI GGNNCC 8 cut(s) 454, 576, 628, 664, 1134, 1761, 1810, 2244
BmrFI CCNGG 3 cut(s) 1382, 1914, 2546
BmsI GCATC 4 cut(s) 490, 727, 2218, 2445
BpiI GAAGAC 3 cut(s) 1098, 1227, 2393
BpmI CTGGAG 3 cut(s) 1035, 1341, 1722
Bpu10I CCTNAGC 1 cut(s) 2512
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 4 cut(s) 116, 941, 1564, 2169
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 4 cut(s) 427, 1581, 1775, 1981
BsaWI WCCGGW 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 2157, 2187
Bsc4I CCNNNNNNNGG 6 cut(s) 198, 325, 702, 814, 1284, 1548
Bse1I ACTGG 5 cut(s) 1358, 1622, 1848, 2368, 2459
Bse21I CCTNAGG 1 cut(s) 340
Bse3DI GCAATG 1 cut(s) 250
BseBI CCWGG 3 cut(s) 1382, 1914, 2546
BseDI CCNNGG 4 cut(s) 427, 1581, 1775, 1981
BseGI GGATG 3 cut(s) 352, 1339, 2056
BseLI CCNNNNNNNGG 6 cut(s) 198, 325, 702, 814, 1284, 1548
BseMI GCAATG 1 cut(s) 250
BseMII CTCAG 5 cut(s) 294, 354, 1031, 1194, 2526
BseNI ACTGG 5 cut(s) 1358, 1622, 1848, 2368, 2459
BseRI GAGGAG 1 cut(s) 962
BseSI GKGCMC 2 cut(s) 992, 2182
BseXI GCAGC 2 cut(s) 909, 1027
BseYI CCCAGC 1 cut(s) 1548
BsgI GTGCAG 1 cut(s) 1486
Bsh1236I CGCG 2 cut(s) 82, 935
BshFI GGCC 4 cut(s) 629, 927, 2073, 2344
BshNI GGYRCC 1 cut(s) 574
BsiHKAI GWGCWC 1 cut(s) 2182
BsiSI CCGG 1 cut(s) 142
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 6 cut(s) 198, 325, 702, 814, 1284, 1548
BsmAI GTCTC 6 cut(s) 92, 150, 1024, 1122, 1582, 2464
BsmBI CGTCTC 3 cut(s) 92, 1582, 2464
BsmFI GGGAC 1 cut(s) 364
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 4 cut(s) 629, 927, 2073, 2344
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 4 cut(s) 667, 992, 1591, 2182
Bsp143I GATC 7 cut(s) 235, 953, 1009, 1132, 2213, 2507, 2551
Bsp1720I GCTNAGC 1 cut(s) 303
Bsp19I CCATGG 1 cut(s) 1775
Bsp68I TCGCGA 1 cut(s) 935
BspACI CCGC 5 cut(s) 44, 74, 192, 388, 1707
BspANI GGCC 4 cut(s) 629, 927, 2073, 2344
BspCNI CTCAG 5 cut(s) 295, 353, 1030, 1193, 2525
BspFNI CGCG 2 cut(s) 82, 935
BspLI GGNNCC 8 cut(s) 454, 576, 628, 664, 1134, 1761, 1810, 2244
BspMAI CTGCAG 2 cut(s) 259, 847
BspMI ACCTGC 1 cut(s) 697
BspPI GGATC 5 cut(s) 961, 1017, 1127, 1140, 2502
BspT107I GGYRCC 1 cut(s) 574
BspTI CTTAAG 1 cut(s) 1688
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 250
BsrI ACTGG 5 cut(s) 1358, 1622, 1848, 2368, 2459
BssECI CCNNGG 4 cut(s) 427, 1581, 1775, 1981
BssMI GATC 7 cut(s) 235, 953, 1009, 1132, 2213, 2507, 2551
BssNAI GTATAC 1 cut(s) 1196
BssT1I CCWWGG 4 cut(s) 427, 1581, 1775, 1981
Bst1107I GTATAC 1 cut(s) 1196
Bst2UI CCWGG 3 cut(s) 1382, 1914, 2546
Bst4CI ACNGT 4 cut(s) 112, 1343, 2320, 2392
Bst6I CTCTTC 4 cut(s) 882, 1022, 1359, 2154
BstAFI CTTAAG 1 cut(s) 1688
BstDEI CTNAG 8 cut(s) 303, 340, 362, 1017, 1068, 1121, 1180, 2512
BstDSI CCRYGG 1 cut(s) 1775
BstF5I GGATG 3 cut(s) 352, 1339, 2056
BstFNI CGCG 2 cut(s) 82, 935
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 7 cut(s) 238, 956, 1012, 1135, 2216, 2510, 2554
BstMAI GTCTC 6 cut(s) 92, 150, 1024, 1122, 1582, 2464
BstMBI GATC 7 cut(s) 235, 953, 1009, 1132, 2213, 2507, 2551
BstMWI GCNNNNNNNGC 5 cut(s) 254, 385, 500, 842, 1046
BstNI CCWGG 3 cut(s) 1382, 1914, 2546
BstNSI RCATGY 8 cut(s) 374, 383, 768, 830, 1144, 1170, 1235, 1312
BstSCI CCNGG 3 cut(s) 1380, 1912, 2544
BstSFI CTRYAG 3 cut(s) 255, 843, 2346
BstSLI GKGCMC 2 cut(s) 992, 2182
BstUI CGCG 2 cut(s) 82, 935
BstV1I GCAGC 2 cut(s) 909, 1027
BstV2I GAAGAC 3 cut(s) 1098, 1227, 2393
BstX2I RGATCY 2 cut(s) 1132, 2507
BstYI RGATCY 2 cut(s) 1132, 2507
BstZ17I GTATAC 1 cut(s) 1196
Bsu36I CCTNAGG 1 cut(s) 340
BsuI GTATCC 3 cut(s) 8, 816, 1796
BsuRI GGCC 4 cut(s) 629, 927, 2073, 2344
BtgI CCRYGG 1 cut(s) 1775
BtsCI GGATG 3 cut(s) 352, 1339, 2056
BtsI GCAGTG 6 cut(s) 171, 639, 840, 1116, 1469, 1678
BtuMI TCGCGA 1 cut(s) 935
BveI ACCTGC 1 cut(s) 697
CaiI CAGNNNCTG 2 cut(s) 1043, 1187
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 6 cut(s) 121, 168, 627, 925, 1808, 2071
CpoI CGGWCCG 1 cut(s) 121
CseI GACGC 1 cut(s) 109
Csp6I GTAC 7 cut(s) 336, 534, 1302, 1439, 1704, 2234, 2417
CspCI CAANNNNNGTGG 2 cut(s) 2350, 2385
CspI CGGWCCG 1 cut(s) 121
CviQI GTAC 7 cut(s) 336, 534, 1302, 1439, 1704, 2234, 2417
DdeI CTNAG 8 cut(s) 303, 340, 362, 1017, 1068, 1121, 1180, 2512
DpnI GATC 7 cut(s) 237, 955, 1011, 1134, 2215, 2509, 2553
DpnII GATC 7 cut(s) 235, 953, 1009, 1132, 2213, 2507, 2551
Eam1104I CTCTTC 4 cut(s) 882, 1022, 1359, 2154
EarI CTCTTC 4 cut(s) 882, 1022, 1359, 2154
EciI GGCGGA 1 cut(s) 33
Eco130I CCWWGG 4 cut(s) 427, 1581, 1775, 1981
Eco24I GRGCYC 2 cut(s) 667, 1591
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 3 cut(s) 121, 168, 1808
Eco57I CTGAAG 5 cut(s) 72, 1065, 1158, 1239, 2222
Eco81I CCTNAGG 1 cut(s) 340
EcoO109I RGGNCCY 1 cut(s) 1808
EcoRI GAATTC 1 cut(s) 1976
EcoRII CCWGG 3 cut(s) 1380, 1912, 2544
EcoT14I CCWWGG 4 cut(s) 427, 1581, 1775, 1981
EcoT38I GRGCYC 2 cut(s) 667, 1591
ErhI CCWWGG 4 cut(s) 427, 1581, 1775, 1981
Esp3I CGTCTC 3 cut(s) 92, 1582, 2464
FalI AAGNNNNNCTT 6 cut(s) 1257, 1289, 1713, 1745, 2099, 2131
FaqI GGGAC 1 cut(s) 364
FbaI TGATCA 1 cut(s) 235
FblI GTMKAC 2 cut(s) 797, 1195
Fnu4HI GCNGC 3 cut(s) 192, 898, 1041
FokI GGATG 3 cut(s) 359, 1346, 2063
FriOI GRGCYC 2 cut(s) 667, 1591
Fsp4HI GCNGC 3 cut(s) 192, 898, 1041
FspBI CTAG 8 cut(s) 428, 776, 1191, 1199, 1305, 2028, 2037, 2525
GlaI GCGC 1 cut(s) 81
GluI GCNGC 3 cut(s) 192, 898, 1041
GsaI CCCAGC 1 cut(s) 1552
GsuI CTGGAG 3 cut(s) 1035, 1341, 1722
HaeIII GGCC 4 cut(s) 629, 927, 2073, 2344
HapII CCGG 1 cut(s) 142
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 82
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 1339
HindII GTYRAC 1 cut(s) 1339
HindIII AAGCTT 2 cut(s) 2060, 2400
HinfI GANTC 7 cut(s) 542, 1058, 1125, 1178, 1424, 1567, 2330
HpaI GTTAAC 1 cut(s) 1339
HpaII CCGG 1 cut(s) 142
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 6 cut(s) 26, 393, 798, 1196, 1339, 2180
Hpy188III TCNNGA 9 cut(s) 394, 456, 466, 776, 934, 1052, 1969, 2206, 2555
Hpy8I GTNNAC 6 cut(s) 26, 393, 798, 1196, 1339, 2180
Hpy99I CGWCG 2 cut(s) 288, 297
HpyCH4III ACNGT 4 cut(s) 112, 1343, 2320, 2392
HpyCH4IV ACGT 2 cut(s) 22, 1632
HpyF10VI GCNNNNNNNGC 5 cut(s) 254, 385, 500, 842, 1046
HpyF3I CTNAG 8 cut(s) 303, 340, 362, 1017, 1068, 1121, 1180, 2512
HpySE526I ACGT 2 cut(s) 22, 1632
HspAI GCGC 1 cut(s) 80
Ksp22I TGATCA 1 cut(s) 235
KspAI GTTAAC 1 cut(s) 1339
Kzo9I GATC 7 cut(s) 235, 953, 1009, 1132, 2213, 2507, 2551
LmnI GCTCC 6 cut(s) 46, 108, 662, 1054, 2165, 2379
Lsp1109I GCAGC 2 cut(s) 909, 1027
LweI GCATC 4 cut(s) 490, 727, 2218, 2445
MaeI CTAG 8 cut(s) 428, 776, 1191, 1199, 1305, 2028, 2037, 2525
MaeII ACGT 2 cut(s) 22, 1632
MalI GATC 7 cut(s) 237, 955, 1011, 1134, 2215, 2509, 2553
MboI GATC 7 cut(s) 235, 953, 1009, 1132, 2213, 2507, 2551
MfeI CAATTG 2 cut(s) 524, 681
MflI RGATCY 2 cut(s) 1132, 2507
MhlI GDGCHC 4 cut(s) 667, 992, 1591, 2182
MlyI GAGTC 2 cut(s) 1134, 1172
MmeI TCCRAC 2 cut(s) 99, 275
MroXI GAANNNNTTC 7 cut(s) 389, 451, 473, 1095, 1249, 1864, 1976
MslI CAYNNNNRTG 4 cut(s) 113, 644, 1681, 1817
MspA1I CMGCKG 1 cut(s) 1040
MspCI CTTAAG 1 cut(s) 1688
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 3 cut(s) 1382, 1914, 2546
MunI CAATTG 2 cut(s) 524, 681
Mva1269I GAATGC 1 cut(s) 288
MvaI CCWGG 3 cut(s) 1382, 1914, 2546
MvnI CGCG 2 cut(s) 82, 935
MwoI GCNNNNNNNGC 5 cut(s) 254, 385, 500, 842, 1046
NcoI CCATGG 1 cut(s) 1775
NdeII GATC 7 cut(s) 235, 953, 1009, 1132, 2213, 2507, 2551
NlaIV GGNNCC 8 cut(s) 454, 576, 628, 664, 1134, 1761, 1810, 2244
NmuCI GTSAC 6 cut(s) 1628, 1886, 2011, 2188, 2257, 2356
NruI TCGCGA 1 cut(s) 935
NspI RCATGY 8 cut(s) 374, 383, 768, 830, 1144, 1170, 1235, 1312
OliI CACNNNNGTG 1 cut(s) 113
PaeI GCATGC 3 cut(s) 383, 1235, 1312
PaqCI CACCTGC 1 cut(s) 697
PciI ACATGT 1 cut(s) 370
PcsI WCGNNNNNNNCGW 2 cut(s) 214, 289
PctI GAATGC 1 cut(s) 288
PdmI GAANNNNTTC 7 cut(s) 389, 451, 473, 1095, 1249, 1864, 1976
PfeI GAWTC 5 cut(s) 542, 1058, 1424, 1567, 2330
PflFI GACNNNGTC 1 cut(s) 2318
PfoI TCCNGGA 1 cut(s) 2544
PkrI GCNGC 3 cut(s) 193, 899, 1042
PleI GAGTC 2 cut(s) 1133, 1172
PpsI GAGTC 2 cut(s) 1133, 1172
PpuMI RGGWCCY 1 cut(s) 1808
PscI ACATGT 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 906
Psp1406I AACGTT 1 cut(s) 22
Psp5II RGGWCCY 1 cut(s) 1808
Psp6I CCWGG 3 cut(s) 1380, 1912, 2544
PspFI CCCAGC 1 cut(s) 1548
PspGI CCWGG 3 cut(s) 1380, 1912, 2544
PspN4I GGNNCC 8 cut(s) 454, 576, 628, 664, 1134, 1761, 1810, 2244
PspPI GGNCC 6 cut(s) 121, 168, 627, 925, 1808, 2071
PspPPI RGGWCCY 1 cut(s) 1808
PsrI GAACNNNNNNTAC 4 cut(s) 2226, 2258, 2289, 2321
PstI CTGCAG 2 cut(s) 259, 847
PstNI CAGNNNCTG 2 cut(s) 1043, 1187
PsuI RGATCY 2 cut(s) 1132, 2507
PsyI GACNNNGTC 1 cut(s) 2318
PvuII CAGCTG 1 cut(s) 1040
RruI TCGCGA 1 cut(s) 935
RsaI GTAC 7 cut(s) 337, 535, 1303, 1440, 1705, 2235, 2418
RsaNI GTAC 7 cut(s) 336, 534, 1302, 1439, 1704, 2234, 2417
RseI CAYNNNNRTG 4 cut(s) 113, 644, 1681, 1817
Rsr2I CGGWCCG 1 cut(s) 121
RsrII CGGWCCG 1 cut(s) 121
SatI GCNGC 3 cut(s) 192, 898, 1041
Sau3AI GATC 7 cut(s) 235, 953, 1009, 1132, 2213, 2507, 2551
Sau96I GGNCC 6 cut(s) 121, 168, 627, 925, 1808, 2071
ScaI AGTACT 2 cut(s) 2235, 2418
SchI GAGTC 2 cut(s) 1134, 1172
ScrFI CCNGG 3 cut(s) 1382, 1914, 2546
SduI GDGCHC 4 cut(s) 667, 992, 1591, 2182
SfaNI GCATC 4 cut(s) 490, 727, 2218, 2445
SfcI CTRYAG 3 cut(s) 255, 843, 2346
SinI GGWCC 3 cut(s) 121, 168, 1808
SmiMI CAYNNNNRTG 4 cut(s) 113, 644, 1681, 1817
SmlI CTYRAG 5 cut(s) 95, 920, 1543, 1688, 2184
SmoI CTYRAG 5 cut(s) 95, 920, 1543, 1688, 2184
SphI GCATGC 3 cut(s) 383, 1235, 1312
SsiI CCGC 5 cut(s) 44, 74, 192, 388, 1707
SspMI CTAG 8 cut(s) 428, 776, 1191, 1199, 1305, 2028, 2037, 2525
StyD4I CCNGG 3 cut(s) 1380, 1912, 2544
StyI CCWWGG 4 cut(s) 427, 1581, 1775, 1981
TaaI ACNGT 4 cut(s) 112, 1343, 2320, 2392
TaiI ACGT 2 cut(s) 25, 1635
TaqI TCGA 3 cut(s) 49, 208, 2374
TaqII GACCGA 2 cut(s) 138, 2030
TatI WGTACW 2 cut(s) 2233, 2416
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 5 cut(s) 542, 1058, 1424, 1567, 2330
TseFI GTSAC 6 cut(s) 1628, 1886, 2011, 2188, 2257, 2356
TseI GCWGC 2 cut(s) 897, 1040
Tsp45I GTSAC 6 cut(s) 1628, 1886, 2011, 2188, 2257, 2356
TspGWI ACGGA 5 cut(s) 240, 1518, 1957, 2482, 2488
Tth111I GACNNNGTC 1 cut(s) 2318
Vha464I CTTAAG 1 cut(s) 1688
VneI GTGCAC 1 cut(s) 2178
VpaK11BI GGWCC 3 cut(s) 121, 168, 1808
VspI ATTAAT 1 cut(s) 906
XapI RAATTY 7 cut(s) 1324, 1406, 1963, 1976, 2090, 2500, 2570
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 8 cut(s) 374, 383, 768, 830, 1144, 1170, 1235, 1312
XcmI CCANNNNNNNNNTGG 1 cut(s) 2542
XmaJI CCTAGG 1 cut(s) 427
XmiI GTMKAC 2 cut(s) 797, 1195
XmnI GAANNNNTTC 7 cut(s) 389, 451, 473, 1095, 1249, 1864, 1976
XspI CTAG 8 cut(s) 428, 776, 1191, 1199, 1305, 2028, 2037, 2525
ZrmI AGTACT 2 cut(s) 2235, 2418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.