Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Forward (+)

32869026 .. 32874462

Gene Structure 5437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG281700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2580 bp

ATGGCTACCGATGGATACAAACGTTCACAAGTTTCATCAGCTCCGCCTCGAAAATTAAGTGTCCAAAAGTTTGCGGAAGCGCGAGCTTCAGAACTTGAGACGCTCCACACAGTTGTGTCGGACCGACTGAACAATGATTTCCGGTCTCAAAGAAGCAAGAGAAGAAGGACCACTGCTTATGACAATCAAGCCGCAAAAAGGAGATGTCGAAAAAAGCGAAAGCACGGAGTAGGTGATCAATGCAATGCTTTGCCTGCAGAGAAAGATGACAAGAATGTTCCTCGTCGCATTCGTCGGAGAGCTGAGCTTAAAAAGAACCTTCATACGGGTTTTTGTACCTCAGGGGATGGGACAAAGAGGCTTAGAACACATGTTTGGCATGCGAAGCGGTTCACGATGACAAAGCTCTGGGGTTATTATCTTCCCCTAGGATTGCAGGGCAGGGGAAGGGGTTCCAGAGCTGTCCTGAAATGGTTCAAAGATGGAGTGTTTGCCCATGATGCAAGCTATCATGTAGCTATGCAATTGGAGGGTACAGAGGAATCATTACTATCAGTGTTAAGAATGGTATTGGTGCCTTCTCCATCAGCTCGTTCCGAAGATATTTCCCGTTCCATTATTTCAGGGGCCATATATGACACTGCTATGCTTCATCAGTTGGGAGCCCCATGTTCAACCCCAATTGCACCTGCAACCTATATGTGGCGACCCTCTTGCCAACAGGATAGAGATAATGATGCTTCTGCTGTCTATGATGGTGGTGCATGTAATGGTCTAGAGGTTAAAGAACGCTCGTCTACCTTTCGCCAGCTTTGGGTGTGGATACATGCTTCTGCTTTCACTGCAGGGTATGATACTCTCAAATTAGCTTGCCAAAAAGAGATGGAAGAGAGTGGCAGCATGATTAATTTTTTCTCACTTGAGGGCCAACTCGCGAAATTAGAAGTTATGGGATCAAAAGCATTTCAACTCCTCCAAAGGACATTGTGCCCTGTTACAAGAAGAAAGGATCATACTCAGGCATTGAAGAGACATTCAGCTGCTGAAGCTCCAGATGATTCCCAATCTAAGACTATACTTGAAAATGAGGAAGACATTCCTTCTCATGCAGTGTTGTCTCTTAGAGTCAAGGATCCTCGCATGTTCATAGAGAAACGAAAGACTGCATGTGCTTCAGACTCAGGTTCTGCTAGTATACTAGCTGATGAACAAGGAACTGAAGACAAAGAGCATGCTGTCAGTGGAATTATTTCAGACAAGAAGAAAGAGTTACTTTCCTTGATGGGGTCAGAACTTGAAGGTACTAGCATGCTCGCAGAAAAGAATTTGTGGGATGTTAACAGTGGTATAAGTCCTCCAGTGGAAGAGATGGTTCTTTGCCAGGAAAGATATGACCAGAATAAAAAATTCTTCTGCCTTGATGAATCAAGTTCAAGGGTACTACATACTTCAACCAATTTGCAGTGCAGTTCTTGTCCTGTTCTGCTTTTGAAAAATGACAACGGAAGGGGCTTGCATATTGGTTGGTCTGTAATTCTACCCTTGAGCTGGGTCAGGGCATTTTGGATTCCTCTCGTCTCCAAGGGGGCTCATGTGATAGGTTTGAGAGAGAGGCACTGGATTTCATGTGACGTAGGATTGCCATGTTTTCCTTTGGATTTCCCTGATTGCAGTGCATATTTATGCCTTAAGGAAACTGAAAGTACCGCCTCCAATGTTAAAGAGGAACTTCGTCCTCCAGCACAAAGACCTTTGAGGGTTCCCATTTTACCCCCATGGAATAGTATCCAAGTTTCTTTAAGGGAAGGACCCACCAAAATGCGAAATGCCGAAACTTTTAGACTGGAAAACGGGGTCAGAAGCAATTCATCATCTAACTCGGAGTGTGACAATTATGATGTTACATTCTGTCCTGGTAATTTGTTTGATGGTTTTGTAGCACGGACATCTTTTTCACTGACAAATTTCTTGAATGAATTCCAAGGCTGTAATTTACGCCTATGTCCTCATGTGACCGATAAGACGACTAGCTTTACTAGGTTTATGAGGGATGAAAGCAAGCTTGGGCAGGGCCAAAATGGGATTACCAAATTTAGTTACAAGCACAAGTTATGCTTTGTAAGGGTATTTCTCCATGCTTACAAAGAAGGGTTTTTTGAAGAGGGAGCAGTTGTTTGTGCACCTCAAGTGACTGACATCTCACTCTGGACAAGATCAGAGAGTTTTGATGCAGTACTTCAGGTTCCTCAATCTGCTGTGACATCGTATTTCAAAGAGCAATCTTCTGGTAAGTGGGAACTCCAATTACCAGAGGACACTGTCAGTAGAGAATCTCATCGTTGGCCTATAGGCTTTGTGACCACTGGTTTTGTTCGAGGGAGCAAGAAGACAGTGGCACAAGCTTTTTGTGAGGCAGTACTACTTGCTCATATTAGAGGGGAACAATGGGATATGATGCCAGTTAAACGGAGACGGAAGGAAATATATGTCCTTGTGAGGAATTTGAGATCCTCAGCATATAGACTAGCTCTTGCCACTATCGTCCTGGAAGATCAGGAAGAAGATGTTGAATTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

859

Amino Acids

96.9

Weight (kDa)

8.91

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POP1_N	PF06978	121 - 178	2.2e-10	Ribonucleases P/MRP protein subunit POP1, N-terminal
POPLD	PF08170	508 - 584	4.5e-16	POPLD (NUC188) domain
POP1_C	PF22770	758 - 848	7.3e-08	POP1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	697
Acc36I	ACCTGC	1 cut(s)	697
AccB1I	GGYRCC	1 cut(s)	574
AccI	GTMKAC	2 cut(s)	797, 1195
AccII	CGCG	2 cut(s)	82, 935
AciI	CCGC	5 cut(s)	44, 74, 192, 388, 1707
AclI	AACGTT	1 cut(s)	22
AclWI	GGATC	5 cut(s)	961, 1017, 1127, 1140, 2502
AcsI	RAATTY	7 cut(s)	1324, 1406, 1963, 1976, 2090, 2500, 2570
AcuI	CTGAAG	5 cut(s)	72, 1065, 1158, 1239, 2222
AfaI	GTAC	7 cut(s)	337, 535, 1303, 1440, 1705, 2235, 2418
AfiI	CCNNNNNNNGG	6 cut(s)	198, 325, 702, 814, 1284, 1548
AflII	CTTAAG	1 cut(s)	1688
AflIII	ACRYGT	1 cut(s)	370
AjnI	CCWGG	3 cut(s)	1380, 1912, 2544
AjuI	GAANNNNNNNTTGG	4 cut(s)	358, 390, 2046, 2078
AleI	CACNNNNGTG	1 cut(s)	113
Alw21I	GWGCWC	1 cut(s)	2182
Alw26I	GTCTC	6 cut(s)	92, 150, 1024, 1122, 1582, 2464
Alw44I	GTGCAC	1 cut(s)	2178
AlwI	GGATC	5 cut(s)	961, 1017, 1127, 1140, 2502
AlwNI	CAGNNNCTG	2 cut(s)	1043, 1187
AoxI	GGCC	4 cut(s)	627, 925, 2071, 2342
ApaLI	GTGCAC	1 cut(s)	2178
ApeKI	GCWGC	2 cut(s)	897, 1040
ApoI	RAATTY	7 cut(s)	1324, 1406, 1963, 1976, 2090, 2500, 2570
AseI	ATTAAT	1 cut(s)	906
Asp700I	GAANNNNTTC	7 cut(s)	389, 451, 473, 1095, 1249, 1864, 1976
AspA2I	CCTAGG	1 cut(s)	427
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	6 cut(s)	121, 168, 627, 925, 1808, 2071
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	3 cut(s)	121, 168, 1808
AvrII	CCTAGG	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	340
BaeGI	GKGCMC	2 cut(s)	992, 2182
BaeI	ACNNNNGTAYC	2 cut(s)	7, 40
BamHI	GGATCC	1 cut(s)	1132
BanI	GGYRCC	1 cut(s)	574
BanII	GRGCYC	2 cut(s)	667, 1591
BbsI	GAAGAC	3 cut(s)	1098, 1227, 2393
Bbv12I	GWGCWC	1 cut(s)	2182
BbvCI	CCTCAGC	1 cut(s)	2512
BbvI	GCAGC	2 cut(s)	909, 1027
BccI	CCATC	9 cut(s)	5, 341, 476, 592, 749, 877, 1276, 1363, 1922
BcgI	CGANNNNNNTGC	2 cut(s)	696, 730
BciT130I	CCWGG	3 cut(s)	1382, 1914, 2546
BciVI	GTATCC	3 cut(s)	8, 816, 1796
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	6 cut(s)	92, 150, 1024, 1122, 1582, 2464
BfaI	CTAG	8 cut(s)	428, 776, 1191, 1199, 1305, 2028, 2037, 2525
BfmI	CTRYAG	3 cut(s)	255, 843, 2346
BfrI	CTTAAG	1 cut(s)	1688
BfuAI	ACCTGC	1 cut(s)	697
BfuI	GTATCC	3 cut(s)	8, 816, 1796
BisI	GCNGC	3 cut(s)	192, 898, 1041
BlnI	CCTAGG	1 cut(s)	427
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	3 cut(s)	193, 899, 1042
BmcAI	AGTACT	2 cut(s)	2235, 2418
Bme1390I	CCNGG	3 cut(s)	1382, 1914, 2546
Bme18I	GGWCC	3 cut(s)	121, 168, 1808
BmgT120I	GGNCC	6 cut(s)	121, 168, 627, 925, 1808, 2071
BmiI	GGNNCC	8 cut(s)	454, 576, 628, 664, 1134, 1761, 1810, 2244
BmrFI	CCNGG	3 cut(s)	1382, 1914, 2546
BmsI	GCATC	4 cut(s)	490, 727, 2218, 2445
BpiI	GAAGAC	3 cut(s)	1098, 1227, 2393
BpmI	CTGGAG	3 cut(s)	1035, 1341, 1722
Bpu10I	CCTNAGC	1 cut(s)	2512
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	4 cut(s)	116, 941, 1564, 2169
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	427, 1581, 1775, 1981
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	2157, 2187
Bsc4I	CCNNNNNNNGG	6 cut(s)	198, 325, 702, 814, 1284, 1548
Bse1I	ACTGG	5 cut(s)	1358, 1622, 1848, 2368, 2459
Bse21I	CCTNAGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	3 cut(s)	1382, 1914, 2546
BseDI	CCNNGG	4 cut(s)	427, 1581, 1775, 1981
BseGI	GGATG	3 cut(s)	352, 1339, 2056
BseLI	CCNNNNNNNGG	6 cut(s)	198, 325, 702, 814, 1284, 1548
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	5 cut(s)	294, 354, 1031, 1194, 2526
BseNI	ACTGG	5 cut(s)	1358, 1622, 1848, 2368, 2459
BseRI	GAGGAG	1 cut(s)	962
BseSI	GKGCMC	2 cut(s)	992, 2182
BseXI	GCAGC	2 cut(s)	909, 1027
BseYI	CCCAGC	1 cut(s)	1548
BsgI	GTGCAG	1 cut(s)	1486
Bsh1236I	CGCG	2 cut(s)	82, 935
BshFI	GGCC	4 cut(s)	629, 927, 2073, 2344
BshNI	GGYRCC	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	2182
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	6 cut(s)	198, 325, 702, 814, 1284, 1548
BsmAI	GTCTC	6 cut(s)	92, 150, 1024, 1122, 1582, 2464
BsmBI	CGTCTC	3 cut(s)	92, 1582, 2464
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	4 cut(s)	629, 927, 2073, 2344
Bso31I	GGTCTC	1 cut(s)	150
Bsp1286I	GDGCHC	4 cut(s)	667, 992, 1591, 2182
Bsp143I	GATC	7 cut(s)	235, 953, 1009, 1132, 2213, 2507, 2551
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	1775
Bsp68I	TCGCGA	1 cut(s)	935
BspACI	CCGC	5 cut(s)	44, 74, 192, 388, 1707
BspANI	GGCC	4 cut(s)	629, 927, 2073, 2344
BspCNI	CTCAG	5 cut(s)	295, 353, 1030, 1193, 2525
BspFNI	CGCG	2 cut(s)	82, 935
BspLI	GGNNCC	8 cut(s)	454, 576, 628, 664, 1134, 1761, 1810, 2244
BspMAI	CTGCAG	2 cut(s)	259, 847
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	5 cut(s)	961, 1017, 1127, 1140, 2502
BspT107I	GGYRCC	1 cut(s)	574
BspTI	CTTAAG	1 cut(s)	1688
BspTNI	GGTCTC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	5 cut(s)	1358, 1622, 1848, 2368, 2459
BssECI	CCNNGG	4 cut(s)	427, 1581, 1775, 1981
BssMI	GATC	7 cut(s)	235, 953, 1009, 1132, 2213, 2507, 2551
BssNAI	GTATAC	1 cut(s)	1196
BssT1I	CCWWGG	4 cut(s)	427, 1581, 1775, 1981
Bst1107I	GTATAC	1 cut(s)	1196
Bst2UI	CCWGG	3 cut(s)	1382, 1914, 2546
Bst4CI	ACNGT	4 cut(s)	112, 1343, 2320, 2392
Bst6I	CTCTTC	4 cut(s)	882, 1022, 1359, 2154
BstAFI	CTTAAG	1 cut(s)	1688
BstDEI	CTNAG	8 cut(s)	303, 340, 362, 1017, 1068, 1121, 1180, 2512
BstDSI	CCRYGG	1 cut(s)	1775
BstF5I	GGATG	3 cut(s)	352, 1339, 2056
BstFNI	CGCG	2 cut(s)	82, 935
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	7 cut(s)	238, 956, 1012, 1135, 2216, 2510, 2554
BstMAI	GTCTC	6 cut(s)	92, 150, 1024, 1122, 1582, 2464
BstMBI	GATC	7 cut(s)	235, 953, 1009, 1132, 2213, 2507, 2551
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 385, 500, 842, 1046
BstNI	CCWGG	3 cut(s)	1382, 1914, 2546
BstNSI	RCATGY	8 cut(s)	374, 383, 768, 830, 1144, 1170, 1235, 1312
BstSCI	CCNGG	3 cut(s)	1380, 1912, 2544
BstSFI	CTRYAG	3 cut(s)	255, 843, 2346
BstSLI	GKGCMC	2 cut(s)	992, 2182
BstUI	CGCG	2 cut(s)	82, 935
BstV1I	GCAGC	2 cut(s)	909, 1027
BstV2I	GAAGAC	3 cut(s)	1098, 1227, 2393
BstX2I	RGATCY	2 cut(s)	1132, 2507
BstYI	RGATCY	2 cut(s)	1132, 2507
BstZ17I	GTATAC	1 cut(s)	1196
Bsu36I	CCTNAGG	1 cut(s)	340
BsuI	GTATCC	3 cut(s)	8, 816, 1796
BsuRI	GGCC	4 cut(s)	629, 927, 2073, 2344
BtgI	CCRYGG	1 cut(s)	1775
BtsCI	GGATG	3 cut(s)	352, 1339, 2056
BtsI	GCAGTG	6 cut(s)	171, 639, 840, 1116, 1469, 1678
BtuMI	TCGCGA	1 cut(s)	935
BveI	ACCTGC	1 cut(s)	697
CaiI	CAGNNNCTG	2 cut(s)	1043, 1187
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	6 cut(s)	121, 168, 627, 925, 1808, 2071
CpoI	CGGWCCG	1 cut(s)	121
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	7 cut(s)	336, 534, 1302, 1439, 1704, 2234, 2417
CspCI	CAANNNNNGTGG	2 cut(s)	2350, 2385
CspI	CGGWCCG	1 cut(s)	121
CviQI	GTAC	7 cut(s)	336, 534, 1302, 1439, 1704, 2234, 2417
DdeI	CTNAG	8 cut(s)	303, 340, 362, 1017, 1068, 1121, 1180, 2512
DpnI	GATC	7 cut(s)	237, 955, 1011, 1134, 2215, 2509, 2553
DpnII	GATC	7 cut(s)	235, 953, 1009, 1132, 2213, 2507, 2551
Eam1104I	CTCTTC	4 cut(s)	882, 1022, 1359, 2154
EarI	CTCTTC	4 cut(s)	882, 1022, 1359, 2154
EciI	GGCGGA	1 cut(s)	33
Eco130I	CCWWGG	4 cut(s)	427, 1581, 1775, 1981
Eco24I	GRGCYC	2 cut(s)	667, 1591
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	3 cut(s)	121, 168, 1808
Eco57I	CTGAAG	5 cut(s)	72, 1065, 1158, 1239, 2222
Eco81I	CCTNAGG	1 cut(s)	340
EcoO109I	RGGNCCY	1 cut(s)	1808
EcoRI	GAATTC	1 cut(s)	1976
EcoRII	CCWGG	3 cut(s)	1380, 1912, 2544
EcoT14I	CCWWGG	4 cut(s)	427, 1581, 1775, 1981
EcoT38I	GRGCYC	2 cut(s)	667, 1591
ErhI	CCWWGG	4 cut(s)	427, 1581, 1775, 1981
Esp3I	CGTCTC	3 cut(s)	92, 1582, 2464
FalI	AAGNNNNNCTT	6 cut(s)	1257, 1289, 1713, 1745, 2099, 2131
FaqI	GGGAC	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	2 cut(s)	797, 1195
Fnu4HI	GCNGC	3 cut(s)	192, 898, 1041
FokI	GGATG	3 cut(s)	359, 1346, 2063
FriOI	GRGCYC	2 cut(s)	667, 1591
Fsp4HI	GCNGC	3 cut(s)	192, 898, 1041
FspBI	CTAG	8 cut(s)	428, 776, 1191, 1199, 1305, 2028, 2037, 2525
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	3 cut(s)	192, 898, 1041
GsaI	CCCAGC	1 cut(s)	1552
GsuI	CTGGAG	3 cut(s)	1035, 1341, 1722
HaeIII	GGCC	4 cut(s)	629, 927, 2073, 2344
HapII	CCGG	1 cut(s)	142
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	1339
HindII	GTYRAC	1 cut(s)	1339
HindIII	AAGCTT	2 cut(s)	2060, 2400
HinfI	GANTC	7 cut(s)	542, 1058, 1125, 1178, 1424, 1567, 2330
HpaI	GTTAAC	1 cut(s)	1339
HpaII	CCGG	1 cut(s)	142
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	6 cut(s)	26, 393, 798, 1196, 1339, 2180
Hpy188III	TCNNGA	9 cut(s)	394, 456, 466, 776, 934, 1052, 1969, 2206, 2555
Hpy8I	GTNNAC	6 cut(s)	26, 393, 798, 1196, 1339, 2180
Hpy99I	CGWCG	2 cut(s)	288, 297
HpyCH4III	ACNGT	4 cut(s)	112, 1343, 2320, 2392
HpyCH4IV	ACGT	2 cut(s)	22, 1632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 385, 500, 842, 1046
HpyF3I	CTNAG	8 cut(s)	303, 340, 362, 1017, 1068, 1121, 1180, 2512
HpySE526I	ACGT	2 cut(s)	22, 1632
HspAI	GCGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	235
KspAI	GTTAAC	1 cut(s)	1339
Kzo9I	GATC	7 cut(s)	235, 953, 1009, 1132, 2213, 2507, 2551
LmnI	GCTCC	6 cut(s)	46, 108, 662, 1054, 2165, 2379
Lsp1109I	GCAGC	2 cut(s)	909, 1027
LweI	GCATC	4 cut(s)	490, 727, 2218, 2445
MaeI	CTAG	8 cut(s)	428, 776, 1191, 1199, 1305, 2028, 2037, 2525
MaeII	ACGT	2 cut(s)	22, 1632
MalI	GATC	7 cut(s)	237, 955, 1011, 1134, 2215, 2509, 2553
MboI	GATC	7 cut(s)	235, 953, 1009, 1132, 2213, 2507, 2551
MfeI	CAATTG	2 cut(s)	524, 681
MflI	RGATCY	2 cut(s)	1132, 2507
MhlI	GDGCHC	4 cut(s)	667, 992, 1591, 2182
MlyI	GAGTC	2 cut(s)	1134, 1172
MmeI	TCCRAC	2 cut(s)	99, 275
MroXI	GAANNNNTTC	7 cut(s)	389, 451, 473, 1095, 1249, 1864, 1976
MslI	CAYNNNNRTG	4 cut(s)	113, 644, 1681, 1817
MspA1I	CMGCKG	1 cut(s)	1040
MspCI	CTTAAG	1 cut(s)	1688
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	3 cut(s)	1382, 1914, 2546
MunI	CAATTG	2 cut(s)	524, 681
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	3 cut(s)	1382, 1914, 2546
MvnI	CGCG	2 cut(s)	82, 935
MwoI	GCNNNNNNNGC	5 cut(s)	254, 385, 500, 842, 1046
NcoI	CCATGG	1 cut(s)	1775
NdeII	GATC	7 cut(s)	235, 953, 1009, 1132, 2213, 2507, 2551
NlaIV	GGNNCC	8 cut(s)	454, 576, 628, 664, 1134, 1761, 1810, 2244
NmuCI	GTSAC	6 cut(s)	1628, 1886, 2011, 2188, 2257, 2356
NruI	TCGCGA	1 cut(s)	935
NspI	RCATGY	8 cut(s)	374, 383, 768, 830, 1144, 1170, 1235, 1312
OliI	CACNNNNGTG	1 cut(s)	113
PaeI	GCATGC	3 cut(s)	383, 1235, 1312
PaqCI	CACCTGC	1 cut(s)	697
PciI	ACATGT	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	2 cut(s)	214, 289
PctI	GAATGC	1 cut(s)	288
PdmI	GAANNNNTTC	7 cut(s)	389, 451, 473, 1095, 1249, 1864, 1976
PfeI	GAWTC	5 cut(s)	542, 1058, 1424, 1567, 2330
PflFI	GACNNNGTC	1 cut(s)	2318
PfoI	TCCNGGA	1 cut(s)	2544
PkrI	GCNGC	3 cut(s)	193, 899, 1042
PleI	GAGTC	2 cut(s)	1133, 1172
PpsI	GAGTC	2 cut(s)	1133, 1172
PpuMI	RGGWCCY	1 cut(s)	1808
PscI	ACATGT	1 cut(s)	370
PshBI	ATTAAT	1 cut(s)	906
Psp1406I	AACGTT	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	1808
Psp6I	CCWGG	3 cut(s)	1380, 1912, 2544
PspFI	CCCAGC	1 cut(s)	1548
PspGI	CCWGG	3 cut(s)	1380, 1912, 2544
PspN4I	GGNNCC	8 cut(s)	454, 576, 628, 664, 1134, 1761, 1810, 2244
PspPI	GGNCC	6 cut(s)	121, 168, 627, 925, 1808, 2071
PspPPI	RGGWCCY	1 cut(s)	1808
PsrI	GAACNNNNNNTAC	4 cut(s)	2226, 2258, 2289, 2321
PstI	CTGCAG	2 cut(s)	259, 847
PstNI	CAGNNNCTG	2 cut(s)	1043, 1187
PsuI	RGATCY	2 cut(s)	1132, 2507
PsyI	GACNNNGTC	1 cut(s)	2318
PvuII	CAGCTG	1 cut(s)	1040
RruI	TCGCGA	1 cut(s)	935
RsaI	GTAC	7 cut(s)	337, 535, 1303, 1440, 1705, 2235, 2418
RsaNI	GTAC	7 cut(s)	336, 534, 1302, 1439, 1704, 2234, 2417
RseI	CAYNNNNRTG	4 cut(s)	113, 644, 1681, 1817
Rsr2I	CGGWCCG	1 cut(s)	121
RsrII	CGGWCCG	1 cut(s)	121
SatI	GCNGC	3 cut(s)	192, 898, 1041
Sau3AI	GATC	7 cut(s)	235, 953, 1009, 1132, 2213, 2507, 2551
Sau96I	GGNCC	6 cut(s)	121, 168, 627, 925, 1808, 2071
ScaI	AGTACT	2 cut(s)	2235, 2418
SchI	GAGTC	2 cut(s)	1134, 1172
ScrFI	CCNGG	3 cut(s)	1382, 1914, 2546
SduI	GDGCHC	4 cut(s)	667, 992, 1591, 2182
SfaNI	GCATC	4 cut(s)	490, 727, 2218, 2445
SfcI	CTRYAG	3 cut(s)	255, 843, 2346
SinI	GGWCC	3 cut(s)	121, 168, 1808
SmiMI	CAYNNNNRTG	4 cut(s)	113, 644, 1681, 1817
SmlI	CTYRAG	5 cut(s)	95, 920, 1543, 1688, 2184
SmoI	CTYRAG	5 cut(s)	95, 920, 1543, 1688, 2184
SphI	GCATGC	3 cut(s)	383, 1235, 1312
SsiI	CCGC	5 cut(s)	44, 74, 192, 388, 1707
SspMI	CTAG	8 cut(s)	428, 776, 1191, 1199, 1305, 2028, 2037, 2525
StyD4I	CCNGG	3 cut(s)	1380, 1912, 2544
StyI	CCWWGG	4 cut(s)	427, 1581, 1775, 1981
TaaI	ACNGT	4 cut(s)	112, 1343, 2320, 2392
TaiI	ACGT	2 cut(s)	25, 1635
TaqI	TCGA	3 cut(s)	49, 208, 2374
TaqII	GACCGA	2 cut(s)	138, 2030
TatI	WGTACW	2 cut(s)	2233, 2416
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	5 cut(s)	542, 1058, 1424, 1567, 2330
TseFI	GTSAC	6 cut(s)	1628, 1886, 2011, 2188, 2257, 2356
TseI	GCWGC	2 cut(s)	897, 1040
Tsp45I	GTSAC	6 cut(s)	1628, 1886, 2011, 2188, 2257, 2356
TspGWI	ACGGA	5 cut(s)	240, 1518, 1957, 2482, 2488
Tth111I	GACNNNGTC	1 cut(s)	2318
Vha464I	CTTAAG	1 cut(s)	1688
VneI	GTGCAC	1 cut(s)	2178
VpaK11BI	GGWCC	3 cut(s)	121, 168, 1808
VspI	ATTAAT	1 cut(s)	906
XapI	RAATTY	7 cut(s)	1324, 1406, 1963, 1976, 2090, 2500, 2570
XbaI	TCTAGA	1 cut(s)	775
XceI	RCATGY	8 cut(s)	374, 383, 768, 830, 1144, 1170, 1235, 1312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2542
XmaJI	CCTAGG	1 cut(s)	427
XmiI	GTMKAC	2 cut(s)	797, 1195
XmnI	GAANNNNTTC	7 cut(s)	389, 451, 473, 1095, 1249, 1864, 1976
XspI	CTAG	8 cut(s)	428, 776, 1191, 1199, 1305, 2028, 2037, 2525
ZrmI	AGTACT	2 cut(s)	2235, 2418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.