Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Reverse (-)

35042931 .. 35044565

Gene Structure 1635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45218

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAGGGATGAAAGCAAGCTTGGGCAGGGCCAAAATGGGATTACCAAATTTAGTTACAACCACAAGTTATGCTTTGTAAGGTATTTCTCCATGCTTACAAAGAAGGGTTTTTTGAAGAGGAAGCAGTTGTTTGTGCACCTCCAGGTGACTGACATCTCACTGTGGACAAGATCAGAGAGTTTTGATGCAGGACTTCAAGTTCCTCAATCTGCTGTGACATCGTATTTCAAAGAGCAATCTTCTGGTAAGTGGGAACTCCAATTACCAGAGGACACTGTCAGTAGAGAATCTCATCGTTGGCCTATAGGCTTTGTGACCACTGGTTTTGTTCGAGGGAGCAAGAAGACAGTAGCACAAGCTTTTTGTGAGGCAGTACTACTTGCTCATATTAGAGGGGAACAATGGGATATGATGCCAGTTAAACGGAGACGGAAGGAAATATATGTTCTCGTGAGGAATTTGAGATCCTCAGCATATAGACTAGCTCTTGCCACTATCGTCCTGGAAGATCAGGAAGAAGATGTTGAATTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

178

Amino Acids

20.68

Weight (kDa)

9.51

Isoelectric Point (pI)

58.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POP1_C	PF22770	77 - 167	2.4e-09	POP1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	459
AcsI	RAATTY	3 cut(s)	47, 457, 527
AfaI	GTAC	1 cut(s)	375
AgsI	TTSAA	4 cut(s)	115, 197, 229, 527
AjnI	CCWGG	2 cut(s)	141, 501
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	3 cut(s)	19, 359, 485
AluI	AGCT	3 cut(s)	19, 359, 485
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	421
Alw44I	GTGCAC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	459
AoxI	GGCC	2 cut(s)	28, 299
ApaLI	GTGCAC	1 cut(s)	134
ApoI	RAATTY	3 cut(s)	47, 457, 527
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	138
BauI	CACGAG	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	469
BciT130I	CCWGG	2 cut(s)	143, 503
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	303
BmcAI	AGTACT	1 cut(s)	375
Bme1390I	CCNGG	2 cut(s)	143, 503
BmgT120I	GGNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	143, 503
BmsI	GCATC	2 cut(s)	175, 402
BpiI	GAAGAC	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	469
Bse1I	ACTGG	2 cut(s)	325, 416
BseBI	CCWGG	2 cut(s)	143, 503
BseGI	GGATG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	2 cut(s)	325, 416
BseSI	GKGCMC	1 cut(s)	138
BshFI	GGCC	2 cut(s)	30, 301
BsiHKAI	GWGCWC	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	421
BsmBI	CGTCTC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	30, 301
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	170, 464, 508
BspANI	GGCC	2 cut(s)	30, 301
BspCNI	CTCAG	1 cut(s)	482
BspPI	GGATC	1 cut(s)	459
BsrI	ACTGG	2 cut(s)	325, 416
BssMI	GATC	3 cut(s)	170, 464, 508
BssSI	CACGAG	1 cut(s)	449
Bst2BI	CACGAG	1 cut(s)	449
Bst2UI	CCWGG	2 cut(s)	143, 503
Bst4CI	ACNGT	3 cut(s)	162, 277, 349
Bst6I	CTCTTC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	469
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	3 cut(s)	173, 467, 511
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	3 cut(s)	170, 464, 508
BstNI	CCWGG	2 cut(s)	143, 503
BstSCI	CCNGG	2 cut(s)	141, 501
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	138
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	30, 301
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	3 cut(s)	158, 273, 318
Cac8I	GCNNGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	374
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	6 cut(s)	19, 30, 301, 309, 359, 485
CviKI_1	RGCY	6 cut(s)	19, 30, 301, 309, 359, 485
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	1 cut(s)	469
DpnI	GATC	3 cut(s)	172, 466, 510
DpnII	GATC	3 cut(s)	170, 464, 508
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	141, 501
Esp3I	CGTCTC	1 cut(s)	421
FaeI	CATG	1 cut(s)	94
FaiI	YATR	9 cut(s)	70, 92, 305, 387, 410, 442, 444, 475, 477
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FatI	CATG	1 cut(s)	90
FokI	GGATG	1 cut(s)	20
FspBI	CTAG	1 cut(s)	482
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	30, 301
Hin1II	CATG	1 cut(s)	94
HindIII	AAGCTT	2 cut(s)	17, 357
HinfI	GANTC	1 cut(s)	287
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	136, 165
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	451, 512
Hpy8I	GTNNAC	2 cut(s)	136, 165
HpyAV	CCTTC	2 cut(s)	97, 427
HpyCH4III	ACNGT	3 cut(s)	162, 277, 349
HpyCH4V	TGCA	2 cut(s)	136, 188
HpyF3I	CTNAG	1 cut(s)	469
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	170, 464, 508
LmnI	GCTCC	1 cut(s)	336
LweI	GCATC	2 cut(s)	175, 402
MaeI	CTAG	1 cut(s)	482
MaeIII	GTNAC	4 cut(s)	53, 145, 214, 313
MalI	GATC	3 cut(s)	172, 466, 510
MboI	GATC	3 cut(s)	170, 464, 508
MboII	GAAGA	6 cut(s)	127, 231, 355, 518, 527, 530
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	4 cut(s)	47, 260, 457, 527
MnlI	CCTC	9 cut(s)	111, 149, 213, 262, 326, 361, 386, 447, 478
MseI	TTAA	1 cut(s)	420
MspR9I	CCNGG	2 cut(s)	143, 503
MvaI	CCWGG	2 cut(s)	143, 503
NdeII	GATC	3 cut(s)	170, 464, 508
NlaIII	CATG	1 cut(s)	94
NmuCI	GTSAC	3 cut(s)	145, 214, 313
PfeI	GAWTC	1 cut(s)	287
PflFI	GACNNNGTC	1 cut(s)	275
PfoI	TCCNGGA	1 cut(s)	501
Psp6I	CCWGG	2 cut(s)	141, 501
PspGI	CCWGG	2 cut(s)	141, 501
PspPI	GGNCC	1 cut(s)	28
PsrI	GAACNNNNNNTAC	2 cut(s)	246, 278
PsuI	RGATCY	1 cut(s)	464
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	420
Sau3AI	GATC	3 cut(s)	170, 464, 508
Sau96I	GGNCC	1 cut(s)	28
ScaI	AGTACT	1 cut(s)	375
ScrFI	CCNGG	2 cut(s)	143, 503
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	6 cut(s)	21, 83, 141, 147, 361, 487
SfaNI	GCATC	2 cut(s)	175, 402
SfcI	CTRYAG	1 cut(s)	303
Sse9I	AATT	4 cut(s)	47, 260, 457, 527
SspMI	CTAG	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	141, 501
TaaI	ACNGT	3 cut(s)	162, 277, 349
TaqI	TCGA	1 cut(s)	331
TasI	AATT	4 cut(s)	47, 260, 457, 527
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	3 cut(s)	165, 280, 325
TseFI	GTSAC	3 cut(s)	145, 214, 313
Tsp45I	GTSAC	3 cut(s)	145, 214, 313
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	2 cut(s)	439, 445
TspRI	CASTG	3 cut(s)	165, 280, 325
Tth111I	GACNNNGTC	1 cut(s)	275
VneI	GTGCAC	1 cut(s)	134
XapI	RAATTY	3 cut(s)	47, 457, 527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XspI	CTAG	1 cut(s)	482
ZrmI	AGTACT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.