Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Forward (+)

33517478 .. 33521056

Gene Structure 3579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1273000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGATACATGCTTCTGCTCTCTCTGAAGCTTATGACACTCTGAAACTAGCTTGCCAAAAAGATATGGAGGGCGGGGACATCGTGATTAATTGTTTCTCACTTGAAGGTCAACTTGCAAAATTAGAATTAGTGGGATCAAAAGCATTTCAACTCCTTCAAAGGACATCAATCCCCTCTACCAATGGAGTAAGCCCTCCAGTGGAAGAGGCTGTTCTTTGCAAGGAAAAACATGACCAGAAGAGGAATTTCTTCTGCCTCGATGATTCAAGTTCAGGGGCAGTAAATACTTCCTCCACGTCACAGGGCTCACAGTCTTGCCCGATTATGCTTTTGAAGAATAGTAACGGGAGAGGCTTGTATGAAACCGAAGCTGCTGCCTCTAATCTTAAAGATGAACCGCGTCCTCCAGCCATAAGACCTTTGAGGGTTCTCATTTTATCCCCATGGAATAGTATCCGAGTTGCTTTAAATGAAGAATCTGTTGCGGTTGGAGATGCTGAAAGTTTTAGGCAACAACATGGTGTCAGAAGCGATTCATCATCTAATTCAGAGTCACGGAAGAGTTTTTCGCTGACAAATTTCTTGAATGAAATTCAAGGCTGTCATTTACCTATGTACCCTTATGTGGCTGATAAGGAGACAAGTTTTGCGAAGTTTATGAGGGATGAAATCAAGCTTGAACCGGGCCAAGATCAGCTTACTAGATTTAAGTACAATCTTAAATTATGTTTTGTTAGAGTATTGCTCCATGCTTACAACAAGGAAGGTTTTCTTGAAGAAGGAGCAGTAATTTGTGCGCCTCTACTGACGGACATCTCACTGTGGACCAGACTTGTTTTCGCCGTGGTGATTAATGATTTAATTGAATGCGTCTGCTCTAATGTGCCTGGACCAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

300

Amino Acids

32.94

Weight (kDa)

5.5

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	400
AciI	CCGC	3 cut(s)	72, 398, 485
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	3 cut(s)	244, 577, 591
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	2 cut(s)	617, 713
AfiI	CCNNNNNNNGG	3 cut(s)	199, 625, 893
AjiI	CACGTC	1 cut(s)	297
AjnI	CCWGG	2 cut(s)	886, 892
AluBI	AGCT	5 cut(s)	29, 50, 371, 676, 697
AluI	AGCT	5 cut(s)	29, 50, 371, 676, 697
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	685
ApeKI	GCWGC	2 cut(s)	371, 374
ApoI	RAATTY	3 cut(s)	244, 577, 591
AseI	ATTAAT	2 cut(s)	87, 852
Asp700I	GAANNNNTTC	3 cut(s)	248, 532, 768
AspLEI	GCGC	1 cut(s)	799
AspS9I	GGNCC	3 cut(s)	685, 825, 890
AsuC2I	CCSGG	1 cut(s)	684
AsuHPI	GGTGA	1 cut(s)	859
AvaII	GGWCC	2 cut(s)	825, 890
BaeI	ACNNNNGTAYC	2 cut(s)	599, 632
BanII	GRGCYC	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	358, 361
BceAI	ACGGC	1 cut(s)	827
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	2 cut(s)	888, 894
BciVI	GTATCC	1 cut(s)	464
BcnI	CCSGG	1 cut(s)	684
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	2 cut(s)	47, 702
BfuI	GTATCC	1 cut(s)	464
BisI	GCNGC	2 cut(s)	372, 375
BlsI	GCNGC	2 cut(s)	373, 376
Bme1390I	CCNGG	3 cut(s)	684, 888, 894
Bme18I	GGWCC	2 cut(s)	825, 890
BmgBI	CACGTC	1 cut(s)	297
BmgT120I	GGNCC	3 cut(s)	685, 825, 890
BmrFI	CCNGG	3 cut(s)	684, 888, 894
BmsI	GCATC	1 cut(s)	484
BplI	GAGNNNNNCTC	2 cut(s)	729, 761
BpmI	CTGGAG	2 cut(s)	180, 390
BpuMI	CCSGG	1 cut(s)	684
BsaJI	CCNNGG	2 cut(s)	443, 843
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 625, 893
Bse1I	ACTGG	1 cut(s)	197
BseBI	CCWGG	2 cut(s)	888, 894
BseDI	CCNNGG	2 cut(s)	443, 843
BseGI	GGATG	1 cut(s)	670
BseLI	CCNNNNNNNGG	3 cut(s)	199, 625, 893
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	358, 361
Bsh1236I	CGCG	1 cut(s)	400
BshFI	GGCC	1 cut(s)	687
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	199, 625, 893
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	872
BsnI	GGCC	1 cut(s)	687
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	134, 691
Bsp19I	CCATGG	1 cut(s)	443
BspACI	CCGC	3 cut(s)	72, 398, 485
BspANI	GGCC	1 cut(s)	687
BspFNI	CGCG	1 cut(s)	400
BspPI	GGATC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	443, 843
BssMI	GATC	2 cut(s)	134, 691
BssT1I	CCWWGG	1 cut(s)	443
Bst2UI	CCWGG	2 cut(s)	888, 894
Bst4CI	ACNGT	2 cut(s)	312, 822
Bst6I	CTCTTC	3 cut(s)	198, 233, 554
BstC8I	GCNNGC	1 cut(s)	52
BstDSI	CCRYGG	2 cut(s)	443, 843
BstENI	CCTNNNNNAGG	1 cut(s)	891
BstF5I	GGATG	1 cut(s)	670
BstFNI	CGCG	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	799
BstKTI	GATC	2 cut(s)	137, 694
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	2 cut(s)	134, 691
BstNI	CCWGG	2 cut(s)	888, 894
BstNSI	RCATGY	1 cut(s)	11
BstSCI	CCNGG	3 cut(s)	682, 886, 892
BstUI	CGCG	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	358, 361
BsuI	GTATCC	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	687
BtgI	CCRYGG	2 cut(s)	443, 843
BtrI	CACGTC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	670
BtsIMutI	CAGTG	2 cut(s)	204, 818
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	799
Cfr13I	GGNCC	3 cut(s)	685, 825, 890
CseI	GACGC	2 cut(s)	389, 859
Csp6I	GTAC	2 cut(s)	616, 712
CviAII	CATG	5 cut(s)	8, 230, 444, 518, 749
CviQI	GTAC	2 cut(s)	616, 712
DpnI	GATC	2 cut(s)	136, 693
DpnII	GATC	2 cut(s)	134, 691
DraI	TTTAAA	1 cut(s)	468
Eam1104I	CTCTTC	3 cut(s)	198, 233, 554
EarI	CTCTTC	3 cut(s)	198, 233, 554
Eco130I	CCWWGG	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	308
Eco47I	GGWCC	2 cut(s)	825, 890
Eco57I	CTGAAG	1 cut(s)	45
EcoNI	CCTNNNNNAGG	1 cut(s)	891
EcoRII	CCWGG	2 cut(s)	886, 892
EcoT14I	CCWWGG	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	5 cut(s)	11, 233, 447, 521, 752
FalI	AAGNNNNNCTT	6 cut(s)	96, 128, 681, 713, 756, 788
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	5 cut(s)	7, 229, 443, 517, 748
FauI	CCCGC	1 cut(s)	65
Fnu4HI	GCNGC	2 cut(s)	372, 375
FokI	GGATG	1 cut(s)	677
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	2 cut(s)	372, 375
FspBI	CTAG	2 cut(s)	47, 702
GlaI	GCGC	1 cut(s)	798
GluI	GCNGC	2 cut(s)	372, 375
GsuI	CTGGAG	2 cut(s)	180, 390
HaeIII	GGCC	1 cut(s)	687
HapII	CCGG	1 cut(s)	683
HgaI	GACGC	2 cut(s)	389, 859
HhaI	GCGC	1 cut(s)	799
Hin1II	CATG	5 cut(s)	11, 233, 447, 521, 752
Hin6I	GCGC	1 cut(s)	797
HinP1I	GCGC	1 cut(s)	797
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HindIII	AAGCTT	2 cut(s)	27, 674
HinfI	GANTC	4 cut(s)	263, 476, 533, 551
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	1 cut(s)	859
Hpy166II	GTNNAC	2 cut(s)	110, 825
Hpy188I	TCNGA	5 cut(s)	25, 42, 458, 527, 550
Hpy188III	TCNNGA	3 cut(s)	82, 583, 773
Hpy8I	GTNNAC	2 cut(s)	110, 825
HpyAV	CCTTC	4 cut(s)	98, 164, 758, 773
HpyCH4III	ACNGT	2 cut(s)	312, 822
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	116, 219
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	5 cut(s)	11, 233, 447, 521, 752
HspAI	GCGC	1 cut(s)	797
Kzo9I	GATC	2 cut(s)	134, 691
LmnI	GCTCC	2 cut(s)	750, 782
LpnPI	CCDG	9 cut(s)	210, 248, 258, 287, 420, 696, 841, 873, 879
Lsp1109I	GCAGC	2 cut(s)	358, 361
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	2 cut(s)	47, 702
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	3 cut(s)	297, 341, 552
MalI	GATC	2 cut(s)	136, 693
MboI	GATC	2 cut(s)	134, 691
MboII	GAAGA	7 cut(s)	215, 241, 250, 346, 485, 571, 788
MhlI	GDGCHC	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	469
MroXI	GAANNNNTTC	3 cut(s)	248, 532, 768
MseI	TTAA	7 cut(s)	87, 387, 467, 708, 720, 852, 860
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	3 cut(s)	684, 888, 894
Mva1269I	GAATGC	1 cut(s)	872
MvaI	CCWGG	2 cut(s)	888, 894
MvnI	CGCG	1 cut(s)	400
NciI	CCSGG	1 cut(s)	684
NcoI	CCATGG	1 cut(s)	443
NdeII	GATC	2 cut(s)	134, 691
NlaIII	CATG	5 cut(s)	11, 233, 447, 521, 752
NmuCI	GTSAC	2 cut(s)	297, 552
NspI	RCATGY	1 cut(s)	11
PctI	GAATGC	1 cut(s)	872
PdmI	GAANNNNTTC	3 cut(s)	248, 532, 768
PfeI	GAWTC	3 cut(s)	263, 476, 533
PkrI	GCNGC	2 cut(s)	373, 376
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PshBI	ATTAAT	2 cut(s)	87, 852
Psp6I	CCWGG	2 cut(s)	886, 892
PspGI	CCWGG	2 cut(s)	886, 892
PspPI	GGNCC	3 cut(s)	685, 825, 890
RsaI	GTAC	2 cut(s)	617, 713
RsaNI	GTAC	2 cut(s)	616, 712
SaqAI	TTAA	7 cut(s)	87, 387, 467, 708, 720, 852, 860
SatI	GCNGC	2 cut(s)	372, 375
Sau3AI	GATC	2 cut(s)	134, 691
Sau96I	GGNCC	3 cut(s)	685, 825, 890
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	3 cut(s)	684, 888, 894
SduI	GDGCHC	1 cut(s)	308
SfaNI	GCATC	1 cut(s)	484
SinI	GGWCC	2 cut(s)	825, 890
SsiI	CCGC	3 cut(s)	72, 398, 485
SspMI	CTAG	2 cut(s)	47, 702
StyD4I	CCNGG	3 cut(s)	682, 886, 892
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	2 cut(s)	312, 822
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	258
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	3 cut(s)	263, 476, 533
Tru1I	TTAA	7 cut(s)	87, 387, 467, 708, 720, 852, 860
Tru9I	TTAA	7 cut(s)	87, 387, 467, 708, 720, 852, 860
TscAI	CASTG	2 cut(s)	204, 825
TseFI	GTSAC	2 cut(s)	297, 552
TseI	GCWGC	2 cut(s)	371, 374
Tsp45I	GTSAC	2 cut(s)	297, 552
TspDTI	ATGAA	6 cut(s)	375, 408, 486, 525, 603, 681
TspGWI	ACGGA	2 cut(s)	571, 824
TspRI	CASTG	2 cut(s)	204, 825
VpaK11BI	GGWCC	2 cut(s)	825, 890
VspI	ATTAAT	2 cut(s)	87, 852
XagI	CCTNNNNNAGG	1 cut(s)	891
XapI	RAATTY	3 cut(s)	244, 577, 591
XceI	RCATGY	1 cut(s)	11
XmnI	GAANNNNTTC	3 cut(s)	248, 532, 768
XspI	CTAG	2 cut(s)	47, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.