Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Forward (+)

32572824 .. 32577281

Gene Structure 4458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G024940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2562 bp

ATGGCTACCGATGGATACAAACGTTCACAAGTTTCATCAGCTCCGCCTCGAAAATTAAGTGTCCAAAAGTTTGCGGAAGCGCGAGCTTCAGAACTTGAGACGCTCCACACAGTTGTATCGGACCGGCTGAACAATGATTTCCGGTCTCAAAGAAGCAAGAGAAGAAGGACCACTGCTTATGACAATCAAGCCGCAAAAAGGAGATGTCGAAAAAAGCAAAAGCACGGAGTAGGTGATCAAAGCAATGCTTTGCCTGCAGAGAAAGATAACAAGAATGTTCCTCGTCGCATTCGTCGGAGAGCTGAGCTTAAAAAGAACCTTCATACGGGTTTTTGTACCTCTGGGGATGGAACAAAGAGGCTTAGAACACATGTTTGGCATGCGAAGCGGTTCACAATGACAAAGCTCTGGGGTTATTATCTTCCCCTAGGATTGCAGGGCAGGGGAAGGGGTTCCAGAGCTGTCCTGAAATGGTTCAAAGATGGAGTGTTTGCCCATGATGCAAGCTATCATGTAGCTATGCAATTGGAGGGTACAGAGGAATCTTTACTATCAGTGTTAAGAATGGTGTTGGTGCCTTCTCCATCAGCTCGTTCCGAAGATATTTCCTGTTCCATTATTTCAGGGGCCATATATGATACTGCTATGCCCCATTTTCAACCCCAATTTCACCTGCAACCTATATGTGGCGACCCTCTTGCCAACAGGAGAGATAATGATGCTTCTGCTGTCTATGATGTTGGTGCATGTAATGGTCTAGAGGTTAAAGAGCGCTCGTCTACCTTTCGCCAGCTTTGGGTGTGGATACATGCTTCTGCTTTCACTGCAGGGTATGATACTCTCAAATTAGCTTGCCAAAAAGAGATGGAAGAGAGCGGCAGCATGATTAATTTTTTCTCACTTGAGGGCCAACTCGCGAAATTAGAAGTTATGGGATCAAAAGCATTTCAACTCCTCCAAAGGACATTGTGCCCAGTTACAAGAAGAAAGGATCATACTTGGGCATTGAAGAGACATTCAGCTGCTGAAGCTCCAGATGATTCCCAATCTAAGACTATACTTGAAAATGAGGAAGACATTCCTTCTCATGCAGTGTTGTCTCTTAGAGTCAAGGATCCTCGCATGTTCATAGAGAAACAAAAGACTGCATGTGCTTCAGACTCAGGTTCTGCTAGTATACTAGCTGATGAACAAGGAACTGAAGACAAAGAGCATGCTGTCAGTGGAATTATTTCAGACAAGAAGAAAGAGTTACTTTCCTTGATGGCGTCAGAACTCGAAGGTACTAGCATGCTCGCAGAAAAGAATTTGTGGGATGTTAACAGTGGTATAAGTCCTCCAGTGGAAGAGATGGTTCTTTGCCAGGAAAGATATGACCAGAATAAAAAATTCTTCTGCCTTGATGAATCAAGTTCAAGGGTACTAAATACTTCAACCAATTTGCAGTGCAGTTCTTGTCCTGTTCTGCTTTTGAAAAATGACAACGGAAGGGGCTTGCATATTGGTTGGTCTGTAATTCTACCCTTGAGCTGGGTCAGGGCATTTTGGATTCCTCTCGTCTCCAAGGGGGCTCATGTGATAGGTTTGAGAGAGAGGCACTGGATTTCATGTGACGTAGGATTGCCATGTTTTCCTTCAGATTTCCCTGATTGCAGTGCATATTTATGCCTTAAGGAAACTGAAAGTGCCGCCTCCAATGTTAAAGAGGAACTTCGTCCTCCAGCACAAAGACCTTTGAGGGTTCCCATTTTACCCCCATGGAATAGTATCCAAGTTTCTTTAAGGGAAGGACCCACCAAAATGCGAAATGCCGAAACTCTTAGACTGGAAATCGGGGTCAGAAGCAATTCATCGTCTAACTCGGAGTGTGACAATTATGATGTTACATTCTGTCCTGGTAATTTGTTTGATGGTTTTGTAGCACGGACATCTTTTTCACTGACAAATTTCTTGAATGAATTCCAAGGCTGTAATTTACGCCTATGTCCTCATGTGACCGATAAGACAACTAGCTTTACTAGGTTTATGAGGGATGAAAGCAAGCTTGGACAGGGCCAAAATGGGATTACCAAATTTAGTTACAAGCACAAGTTATGCTTTGTAAGGGTATTTCTCCATGCTTACAAAGAAGGGTTTTTTGAAGAGGGAGCAGTTGTTTGTGCACCTCAAGTGACTGACATCTCACTTTGGACAAGATCAGAGAGTTTTGATGCAGGACTTCAGGTTCCTCAATCTGCTGTGACATCGTATTTCAAAGAGCAATCTTCTGGTAAGTGGGAGCTCCAATTACCAGAGGACACTGTCAGTAGAGAATCTCATCGTTGGCCTATAGGCTTTGTGACCACTGGTTTTGTTCGAGGGAGCAAGAAGACAGTGGCACAAGCTTTTTGTGAGGCAGTACTACTTGCTCGTATTAGAGAGGAACAATGGGATACGATGCCAGTTAAACGGAGACGGAAGGAAATATATGTTCTCGTGAGGAATTTGAGATCCTCAGCATATAGACTAGCTCTTGCCACTATCGTCCTGGAAGATCAGGAAGAAGATGTTGAATTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

853

Amino Acids

96.24

Weight (kDa)

8.85

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POP1_N	PF06978	121 - 178	2.1e-10	Ribonucleases P/MRP protein subunit POP1, N-terminal
POPLD	PF08170	502 - 578	2.2e-16	POPLD (NUC188) domain
POP1_C	PF22770	752 - 842	5.1e-08	POP1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	681
Acc36I	ACCTGC	1 cut(s)	681
AccB1I	GGYRCC	1 cut(s)	574
AccBSI	CCGCTC	1 cut(s)	876
AccI	GTMKAC	2 cut(s)	779, 1177
AccII	CGCG	2 cut(s)	82, 917
AciI	CCGC	6 cut(s)	44, 74, 192, 388, 876, 1689
AclI	AACGTT	1 cut(s)	22
AclWI	GGATC	5 cut(s)	943, 999, 1109, 1122, 2484
AcsI	RAATTY	7 cut(s)	1306, 1388, 1945, 1958, 2072, 2482, 2552
AcuI	CTGAAG	6 cut(s)	72, 1047, 1140, 1221, 1620, 2204
AcyI	GRCGYC	1 cut(s)	1268
AfaI	GTAC	5 cut(s)	337, 535, 1285, 1422, 2400
AfeI	AGCGCT	1 cut(s)	773
AfiI	CCNNNNNNNGG	5 cut(s)	198, 325, 686, 796, 1530
AflII	CTTAAG	1 cut(s)	1670
AflIII	ACRYGT	1 cut(s)	370
AjnI	CCWGG	3 cut(s)	1362, 1894, 2526
AjuI	GAANNNNNNNTTGG	4 cut(s)	358, 390, 2028, 2060
AloI	GAACNNNNNNTCC	2 cut(s)	2208, 2240
Alw21I	GWGCWC	2 cut(s)	2164, 2283
Alw26I	GTCTC	6 cut(s)	92, 150, 1006, 1104, 1564, 2446
Alw44I	GTGCAC	1 cut(s)	2160
AlwI	GGATC	5 cut(s)	943, 999, 1109, 1122, 2484
AlwNI	CAGNNNCTG	2 cut(s)	1025, 1169
Aor51HI	AGCGCT	1 cut(s)	773
AoxI	GGCC	4 cut(s)	627, 907, 2053, 2324
ApaLI	GTGCAC	1 cut(s)	2160
ApeKI	GCWGC	2 cut(s)	879, 1022
ApoI	RAATTY	7 cut(s)	1306, 1388, 1945, 1958, 2072, 2482, 2552
AseI	ATTAAT	1 cut(s)	888
Asp700I	GAANNNNTTC	7 cut(s)	389, 451, 473, 1077, 1231, 1846, 1958
AspA2I	CCTAGG	1 cut(s)	427
AspLEI	GCGC	2 cut(s)	82, 774
AspS9I	GGNCC	6 cut(s)	121, 168, 627, 907, 1790, 2053
AsuHPI	GGTGA	2 cut(s)	245, 662
AvaII	GGWCC	3 cut(s)	121, 168, 1790
AvrII	CCTAGG	1 cut(s)	427
BaeGI	GKGCMC	2 cut(s)	974, 2164
BaeI	ACNNNNGTAYC	4 cut(s)	7, 40, 99, 132
BamHI	GGATCC	1 cut(s)	1114
BanI	GGYRCC	1 cut(s)	574
BanII	GRGCYC	2 cut(s)	1573, 2283
BauI	CACGAG	1 cut(s)	2474
BbsI	GAAGAC	3 cut(s)	1080, 1209, 2375
Bbv12I	GWGCWC	2 cut(s)	2164, 2283
BbvCI	CCTCAGC	1 cut(s)	2494
BbvI	GCAGC	2 cut(s)	891, 1009
BccI	CCATC	8 cut(s)	5, 341, 476, 592, 859, 1258, 1345, 1904
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BciT130I	CCWGG	3 cut(s)	1364, 1896, 2528
BciVI	GTATCC	4 cut(s)	8, 798, 1778, 2425
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	6 cut(s)	92, 150, 1006, 1104, 1564, 2446
BfaI	CTAG	8 cut(s)	428, 758, 1173, 1181, 1287, 2010, 2019, 2507
BfmI	CTRYAG	3 cut(s)	255, 825, 2328
BfoI	RGCGCY	1 cut(s)	775
BfrI	CTTAAG	1 cut(s)	1670
BfuAI	ACCTGC	1 cut(s)	681
BfuI	GTATCC	4 cut(s)	8, 798, 1778, 2425
BisI	GCNGC	5 cut(s)	192, 877, 880, 1023, 1689
BlnI	CCTAGG	1 cut(s)	427
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	5 cut(s)	193, 878, 881, 1024, 1690
BmcAI	AGTACT	1 cut(s)	2400
Bme1390I	CCNGG	3 cut(s)	1364, 1896, 2528
Bme18I	GGWCC	3 cut(s)	121, 168, 1790
BmgT120I	GGNCC	6 cut(s)	121, 168, 627, 907, 1790, 2053
BmiI	GGNNCC	7 cut(s)	454, 576, 628, 1116, 1743, 1792, 2226
BmrFI	CCNGG	3 cut(s)	1364, 1896, 2528
BmrI	ACTGGG	1 cut(s)	968
BmsI	GCATC	4 cut(s)	490, 709, 2200, 2427
BmuI	ACTGGG	1 cut(s)	968
BpiI	GAAGAC	3 cut(s)	1080, 1209, 2375
BpmI	CTGGAG	3 cut(s)	1017, 1323, 1704
Bpu10I	CCTNAGC	1 cut(s)	2494
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	4 cut(s)	116, 923, 1546, 2151
BsaHI	GRCGYC	1 cut(s)	1268
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	427, 1563, 1757, 1963
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	2139, 2169
Bsc4I	CCNNNNNNNGG	5 cut(s)	198, 325, 686, 796, 1530
Bse118I	RCCGGY	1 cut(s)	123
Bse1I	ACTGG	6 cut(s)	974, 1340, 1604, 1830, 2350, 2441
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	3 cut(s)	1364, 1896, 2528
BseDI	CCNNGG	4 cut(s)	427, 1563, 1757, 1963
BseGI	GGATG	3 cut(s)	352, 1321, 2038
BseLI	CCNNNNNNNGG	5 cut(s)	198, 325, 686, 796, 1530
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	3 cut(s)	294, 1176, 2508
BseNI	ACTGG	6 cut(s)	974, 1340, 1604, 1830, 2350, 2441
BseRI	GAGGAG	1 cut(s)	944
BseSI	GKGCMC	2 cut(s)	974, 2164
BseXI	GCAGC	2 cut(s)	891, 1009
BseYI	CCCAGC	1 cut(s)	1530
BsgI	GTGCAG	1 cut(s)	1468
Bsh1236I	CGCG	2 cut(s)	82, 917
BshFI	GGCC	4 cut(s)	629, 909, 2055, 2326
BshNI	GGYRCC	1 cut(s)	574
BsiHKAI	GWGCWC	2 cut(s)	2164, 2283
BsiSI	CCGG	2 cut(s)	124, 142
BslI	CCNNNNNNNGG	5 cut(s)	198, 325, 686, 796, 1530
BsmAI	GTCTC	6 cut(s)	92, 150, 1006, 1104, 1564, 2446
BsmBI	CGTCTC	3 cut(s)	92, 1564, 2446
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	4 cut(s)	629, 909, 2055, 2326
Bso31I	GGTCTC	1 cut(s)	150
Bsp1286I	GDGCHC	4 cut(s)	974, 1573, 2164, 2283
Bsp143I	GATC	7 cut(s)	235, 935, 991, 1114, 2195, 2489, 2533
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	1757
Bsp68I	TCGCGA	1 cut(s)	917
BspACI	CCGC	6 cut(s)	44, 74, 192, 388, 876, 1689
BspANI	GGCC	4 cut(s)	629, 909, 2055, 2326
BspCNI	CTCAG	3 cut(s)	295, 1175, 2507
BspFNI	CGCG	2 cut(s)	82, 917
BspLI	GGNNCC	7 cut(s)	454, 576, 628, 1116, 1743, 1792, 2226
BspMAI	CTGCAG	2 cut(s)	259, 829
BspMI	ACCTGC	1 cut(s)	681
BspPI	GGATC	5 cut(s)	943, 999, 1109, 1122, 2484
BspT107I	GGYRCC	1 cut(s)	574
BspTI	CTTAAG	1 cut(s)	1670
BspTNI	GGTCTC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	876
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	123
BsrI	ACTGG	6 cut(s)	974, 1340, 1604, 1830, 2350, 2441
BssAI	RCCGGY	1 cut(s)	123
BssECI	CCNNGG	4 cut(s)	427, 1563, 1757, 1963
BssMI	GATC	7 cut(s)	235, 935, 991, 1114, 2195, 2489, 2533
BssNAI	GTATAC	1 cut(s)	1178
BssNI	GRCGYC	1 cut(s)	1268
BssSI	CACGAG	1 cut(s)	2474
BssT1I	CCWWGG	4 cut(s)	427, 1563, 1757, 1963
Bst1107I	GTATAC	1 cut(s)	1178
Bst2BI	CACGAG	1 cut(s)	2474
Bst2UI	CCWGG	3 cut(s)	1364, 1896, 2528
Bst4CI	ACNGT	4 cut(s)	112, 1325, 2302, 2374
Bst6I	CTCTTC	4 cut(s)	864, 1004, 1341, 2136
BstACI	GRCGYC	1 cut(s)	1268
BstAFI	CTTAAG	1 cut(s)	1670
BstDEI	CTNAG	7 cut(s)	303, 362, 1050, 1103, 1162, 1820, 2494
BstDSI	CCRYGG	1 cut(s)	1757
BstF5I	GGATG	3 cut(s)	352, 1321, 2038
BstFNI	CGCG	2 cut(s)	82, 917
BstH2I	RGCGCY	1 cut(s)	775
BstHHI	GCGC	2 cut(s)	82, 774
BstKTI	GATC	7 cut(s)	238, 938, 994, 1117, 2198, 2492, 2536
BstMAI	GTCTC	6 cut(s)	92, 150, 1006, 1104, 1564, 2446
BstMBI	GATC	7 cut(s)	235, 935, 991, 1114, 2195, 2489, 2533
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 385, 500, 824, 1028
BstNI	CCWGG	3 cut(s)	1364, 1896, 2528
BstNSI	RCATGY	8 cut(s)	374, 383, 750, 812, 1126, 1152, 1217, 1294
BstSCI	CCNGG	3 cut(s)	1362, 1894, 2526
BstSFI	CTRYAG	3 cut(s)	255, 825, 2328
BstSLI	GKGCMC	2 cut(s)	974, 2164
BstUI	CGCG	2 cut(s)	82, 917
BstV1I	GCAGC	2 cut(s)	891, 1009
BstV2I	GAAGAC	3 cut(s)	1080, 1209, 2375
BstX2I	RGATCY	2 cut(s)	1114, 2489
BstYI	RGATCY	2 cut(s)	1114, 2489
BstZ17I	GTATAC	1 cut(s)	1178
BsuI	GTATCC	4 cut(s)	8, 798, 1778, 2425
BsuRI	GGCC	4 cut(s)	629, 909, 2055, 2326
BtgI	CCRYGG	1 cut(s)	1757
BtsCI	GGATG	3 cut(s)	352, 1321, 2038
BtsI	GCAGTG	5 cut(s)	171, 822, 1098, 1451, 1660
BtuMI	TCGCGA	1 cut(s)	917
BveI	ACCTGC	1 cut(s)	681
CaiI	CAGNNNCTG	2 cut(s)	1025, 1169
CfoI	GCGC	2 cut(s)	82, 774
Cfr10I	RCCGGY	1 cut(s)	123
Cfr13I	GGNCC	6 cut(s)	121, 168, 627, 907, 1790, 2053
CpoI	CGGWCCG	1 cut(s)	121
CseI	GACGC	2 cut(s)	109, 1257
Csp6I	GTAC	5 cut(s)	336, 534, 1284, 1421, 2399
CspCI	CAANNNNNGTGG	2 cut(s)	2332, 2367
CspI	CGGWCCG	1 cut(s)	121
CviQI	GTAC	5 cut(s)	336, 534, 1284, 1421, 2399
DdeI	CTNAG	7 cut(s)	303, 362, 1050, 1103, 1162, 1820, 2494
DpnI	GATC	7 cut(s)	237, 937, 993, 1116, 2197, 2491, 2535
DpnII	GATC	7 cut(s)	235, 935, 991, 1114, 2195, 2489, 2533
Eam1104I	CTCTTC	4 cut(s)	864, 1004, 1341, 2136
EarI	CTCTTC	4 cut(s)	864, 1004, 1341, 2136
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	2281
Eco130I	CCWWGG	4 cut(s)	427, 1563, 1757, 1963
Eco24I	GRGCYC	2 cut(s)	1573, 2283
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	3 cut(s)	121, 168, 1790
Eco47III	AGCGCT	1 cut(s)	773
Eco53kI	GAGCTC	1 cut(s)	2281
Eco57I	CTGAAG	6 cut(s)	72, 1047, 1140, 1221, 1620, 2204
EcoICRI	GAGCTC	1 cut(s)	2281
EcoO109I	RGGNCCY	1 cut(s)	1790
EcoRI	GAATTC	1 cut(s)	1958
EcoRII	CCWGG	3 cut(s)	1362, 1894, 2526
EcoT14I	CCWWGG	4 cut(s)	427, 1563, 1757, 1963
EcoT38I	GRGCYC	2 cut(s)	1573, 2283
ErhI	CCWWGG	4 cut(s)	427, 1563, 1757, 1963
Esp3I	CGTCTC	3 cut(s)	92, 1564, 2446
FalI	AAGNNNNNCTT	8 cut(s)	232, 264, 1239, 1271, 1695, 1727, 2081, 2113
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	2 cut(s)	779, 1177
Fnu4HI	GCNGC	5 cut(s)	192, 877, 880, 1023, 1689
FokI	GGATG	3 cut(s)	359, 1328, 2045
FriOI	GRGCYC	2 cut(s)	1573, 2283
Fsp4HI	GCNGC	5 cut(s)	192, 877, 880, 1023, 1689
FspBI	CTAG	8 cut(s)	428, 758, 1173, 1181, 1287, 2010, 2019, 2507
GlaI	GCGC	2 cut(s)	81, 773
GluI	GCNGC	5 cut(s)	192, 877, 880, 1023, 1689
GsaI	CCCAGC	1 cut(s)	1534
GsuI	CTGGAG	3 cut(s)	1017, 1323, 1704
HaeII	RGCGCY	1 cut(s)	775
HaeIII	GGCC	4 cut(s)	629, 909, 2055, 2326
HapII	CCGG	2 cut(s)	124, 142
HgaI	GACGC	2 cut(s)	109, 1257
HhaI	GCGC	2 cut(s)	82, 774
Hin1I	GRCGYC	1 cut(s)	1268
Hin6I	GCGC	2 cut(s)	80, 772
HinP1I	GCGC	2 cut(s)	80, 772
HincII	GTYRAC	1 cut(s)	1321
HindII	GTYRAC	1 cut(s)	1321
HindIII	AAGCTT	2 cut(s)	2042, 2382
HinfI	GANTC	7 cut(s)	542, 1040, 1107, 1160, 1406, 1549, 2312
HpaI	GTTAAC	1 cut(s)	1321
HpaII	CCGG	2 cut(s)	124, 142
HphI	GGTGA	2 cut(s)	245, 662
Hpy166II	GTNNAC	6 cut(s)	26, 393, 780, 1178, 1321, 2162
Hpy188III	TCNNGA	8 cut(s)	456, 466, 758, 916, 1034, 1951, 2476, 2537
Hpy8I	GTNNAC	6 cut(s)	26, 393, 780, 1178, 1321, 2162
Hpy99I	CGWCG	2 cut(s)	288, 297
HpyCH4III	ACNGT	4 cut(s)	112, 1325, 2302, 2374
HpyCH4IV	ACGT	2 cut(s)	22, 1614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 385, 500, 824, 1028
HpyF3I	CTNAG	7 cut(s)	303, 362, 1050, 1103, 1162, 1820, 2494
HpySE526I	ACGT	2 cut(s)	22, 1614
Hsp92I	GRCGYC	1 cut(s)	1268
HspAI	GCGC	2 cut(s)	80, 772
Ksp22I	TGATCA	1 cut(s)	235
KspAI	GTTAAC	1 cut(s)	1321
Kzo9I	GATC	7 cut(s)	235, 935, 991, 1114, 2195, 2489, 2533
LmnI	GCTCC	7 cut(s)	46, 108, 1036, 2147, 2278, 2286, 2361
Lsp1109I	GCAGC	2 cut(s)	891, 1009
LweI	GCATC	4 cut(s)	490, 709, 2200, 2427
MaeI	CTAG	8 cut(s)	428, 758, 1173, 1181, 1287, 2010, 2019, 2507
MaeII	ACGT	2 cut(s)	22, 1614
MalI	GATC	7 cut(s)	237, 937, 993, 1116, 2197, 2491, 2535
MbiI	CCGCTC	1 cut(s)	876
MboI	GATC	7 cut(s)	235, 935, 991, 1114, 2195, 2489, 2533
MfeI	CAATTG	1 cut(s)	524
MflI	RGATCY	2 cut(s)	1114, 2489
MhlI	GDGCHC	4 cut(s)	974, 1573, 2164, 2283
MlyI	GAGTC	2 cut(s)	1116, 1154
MmeI	TCCRAC	1 cut(s)	275
MroXI	GAANNNNTTC	7 cut(s)	389, 451, 473, 1077, 1231, 1846, 1958
MslI	CAYNNNNRTG	2 cut(s)	1663, 1799
MspA1I	CMGCKG	1 cut(s)	1022
MspCI	CTTAAG	1 cut(s)	1670
MspI	CCGG	2 cut(s)	124, 142
MspR9I	CCNGG	3 cut(s)	1364, 1896, 2528
MunI	CAATTG	1 cut(s)	524
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	3 cut(s)	1364, 1896, 2528
MvnI	CGCG	2 cut(s)	82, 917
MwoI	GCNNNNNNNGC	5 cut(s)	254, 385, 500, 824, 1028
NcoI	CCATGG	1 cut(s)	1757
NdeII	GATC	7 cut(s)	235, 935, 991, 1114, 2195, 2489, 2533
NlaIV	GGNNCC	7 cut(s)	454, 576, 628, 1116, 1743, 1792, 2226
NmuCI	GTSAC	6 cut(s)	1610, 1868, 1993, 2170, 2239, 2338
NruI	TCGCGA	1 cut(s)	917
NspI	RCATGY	8 cut(s)	374, 383, 750, 812, 1126, 1152, 1217, 1294
PaeI	GCATGC	3 cut(s)	383, 1217, 1294
PaqCI	CACCTGC	1 cut(s)	681
PciI	ACATGT	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PctI	GAATGC	1 cut(s)	288
PdmI	GAANNNNTTC	7 cut(s)	389, 451, 473, 1077, 1231, 1846, 1958
PfeI	GAWTC	5 cut(s)	542, 1040, 1406, 1549, 2312
PflFI	GACNNNGTC	1 cut(s)	2300
PfoI	TCCNGGA	1 cut(s)	2526
PkrI	GCNGC	5 cut(s)	193, 878, 881, 1024, 1690
PleI	GAGTC	2 cut(s)	1115, 1154
PpsI	GAGTC	2 cut(s)	1115, 1154
PpuMI	RGGWCCY	1 cut(s)	1790
PscI	ACATGT	1 cut(s)	370
PshBI	ATTAAT	1 cut(s)	888
Psp124BI	GAGCTC	1 cut(s)	2283
Psp1406I	AACGTT	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	1790
Psp6I	CCWGG	3 cut(s)	1362, 1894, 2526
PspFI	CCCAGC	1 cut(s)	1530
PspGI	CCWGG	3 cut(s)	1362, 1894, 2526
PspN4I	GGNNCC	7 cut(s)	454, 576, 628, 1116, 1743, 1792, 2226
PspPI	GGNCC	6 cut(s)	121, 168, 627, 907, 1790, 2053
PspPPI	RGGWCCY	1 cut(s)	1790
PstI	CTGCAG	2 cut(s)	259, 829
PstNI	CAGNNNCTG	2 cut(s)	1025, 1169
PsuI	RGATCY	2 cut(s)	1114, 2489
PsyI	GACNNNGTC	1 cut(s)	2300
PvuII	CAGCTG	1 cut(s)	1022
RruI	TCGCGA	1 cut(s)	917
RsaI	GTAC	5 cut(s)	337, 535, 1285, 1422, 2400
RsaNI	GTAC	5 cut(s)	336, 534, 1284, 1421, 2399
RseI	CAYNNNNRTG	2 cut(s)	1663, 1799
Rsr2I	CGGWCCG	1 cut(s)	121
RsrII	CGGWCCG	1 cut(s)	121
SacI	GAGCTC	1 cut(s)	2283
SatI	GCNGC	5 cut(s)	192, 877, 880, 1023, 1689
Sau3AI	GATC	7 cut(s)	235, 935, 991, 1114, 2195, 2489, 2533
Sau96I	GGNCC	6 cut(s)	121, 168, 627, 907, 1790, 2053
ScaI	AGTACT	1 cut(s)	2400
SchI	GAGTC	2 cut(s)	1116, 1154
ScrFI	CCNGG	3 cut(s)	1364, 1896, 2528
SduI	GDGCHC	4 cut(s)	974, 1573, 2164, 2283
SfaNI	GCATC	4 cut(s)	490, 709, 2200, 2427
SfcI	CTRYAG	3 cut(s)	255, 825, 2328
SinI	GGWCC	3 cut(s)	121, 168, 1790
SmiMI	CAYNNNNRTG	2 cut(s)	1663, 1799
SmlI	CTYRAG	5 cut(s)	95, 902, 1525, 1670, 2166
SmoI	CTYRAG	5 cut(s)	95, 902, 1525, 1670, 2166
SphI	GCATGC	3 cut(s)	383, 1217, 1294
SsiI	CCGC	6 cut(s)	44, 74, 192, 388, 876, 1689
SspMI	CTAG	8 cut(s)	428, 758, 1173, 1181, 1287, 2010, 2019, 2507
SstI	GAGCTC	1 cut(s)	2283
StyD4I	CCNGG	3 cut(s)	1362, 1894, 2526
StyI	CCWWGG	4 cut(s)	427, 1563, 1757, 1963
TaaI	ACNGT	4 cut(s)	112, 1325, 2302, 2374
TaiI	ACGT	2 cut(s)	25, 1617
TaqI	TCGA	4 cut(s)	49, 208, 1278, 2356
TaqII	GACCGA	1 cut(s)	2012
TatI	WGTACW	1 cut(s)	2398
TauI	GCSGC	3 cut(s)	194, 879, 1691
TfiI	GAWTC	5 cut(s)	542, 1040, 1406, 1549, 2312
TseFI	GTSAC	6 cut(s)	1610, 1868, 1993, 2170, 2239, 2338
TseI	GCWGC	2 cut(s)	879, 1022
Tsp45I	GTSAC	6 cut(s)	1610, 1868, 1993, 2170, 2239, 2338
TspDTI	ATGAA	9 cut(s)	24, 311, 1117, 1203, 1419, 1596, 1839, 1971, 2049
TspGWI	ACGGA	5 cut(s)	240, 1500, 1939, 2464, 2470
Tth111I	GACNNNGTC	1 cut(s)	2300
Vha464I	CTTAAG	1 cut(s)	1670
VneI	GTGCAC	1 cut(s)	2160
VpaK11BI	GGWCC	3 cut(s)	121, 168, 1790
VspI	ATTAAT	1 cut(s)	888
XapI	RAATTY	7 cut(s)	1306, 1388, 1945, 1958, 2072, 2482, 2552
XbaI	TCTAGA	1 cut(s)	757
XceI	RCATGY	8 cut(s)	374, 383, 750, 812, 1126, 1152, 1217, 1294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2524
XmaJI	CCTAGG	1 cut(s)	427
XmiI	GTMKAC	2 cut(s)	779, 1177
XmnI	GAANNNNTTC	7 cut(s)	389, 451, 473, 1077, 1231, 1846, 1958
XspI	CTAG	8 cut(s)	428, 758, 1173, 1181, 1287, 2010, 2019, 2507
ZrmI	AGTACT	1 cut(s)	2400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.