pycom17g27440

Ribonucleases P/MRP protein subunit POP1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
25610952 .. 25613647
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g27440.3

Sequence Viewer

Length: 1485 bp
ATGGCTACCGATGGTTTCAGACGGCAACAGGTTTCATCAACTCCGCCTCGAAAAATCAATGTCCAAAAGTTGGCAGAATCACGGGGTTCAGAGCTTGAGACACTCCATTCAATTGTATCTAACAGATTGAACAATGATTTCCGGTCTCGGAGAAGCAAGAGAAGAAGAACCACCGCTTACGACAATCAAGTCACCAAAAAAAGATGTAGAAAGAAGCGAAAACTTGATCAGAGTAATGCTTTGACATTGCCTCCAGAGAAAGATGACAAGAAGAATGTTCCTCGTCGCATTCGTAGGAGAGCTGAGCTTAAAATGAACCTTGAAAAGGGTTTCTGCACATCAGGGGATGGTACAAATAGGCTTAGAACACATGTTTGGCATGCGAAGCGGTTCACAATGACAAAGCTTTGGGGTTACTACCTTCCCTTGGGTTTGCAGGGCAGAGGAAGGGGGTCCAGAGCTGTCTTGAAGTGGTTCAGGGATGGAGTGCTTGTTCATGATGCAAGCTATCATGTAGCTATCCAATTGGAGGGGCCGGAGGATTCGTTACTATCAGTGTTAGGCATGGTAATGGTGTCTCCTCCGTCAACTCGTTCTGAAAATGTTTCCCGTTCTGTTAGTTCTGGTGTCATATATGATAATGCTATGCTTCATCATTTGGGAGCACCTCTTTCAAAACCAATTGCTCCTGTGAACTGTATGTGGCGGCCTTCTGGCCAACCAAATAGAGATAATAATGCAGCTGACTGTGAAGGCGATGAATTCAATGGACTAGAGGGTACAAAGCACTCTTCTACTGATCGGCAGCTTTGGGTGTGGATACATGCTTCTGCTCTCACTGAAGCTTATGACACTTTGAAATTAGCTTGCCAAAAAGAGATGGAGGGCAGGGACATCGTGATTAATTGTTTCTCACTTGAGGGTCAACTTGCAAAATTAGAATTAGTTGGATCGAAAGCATTTCAACTCCTTCAAAGAACATTGATCCCTGCTACCAGGACTAGAGATAATTCTTGGAAGTTGATGAGACATTCAGCTGCCAAGGTGGATGAGGATTCCCAGTCTACAATTCATCTTAAAAACGAGGAGGAAATTCCTTCTCATGCAATTTTGTCCCTTAATGTCAAGGATCCTCACACATTGACAGAGAAGGGAAACACTGCAGATGCTCAAGATTTAGGTTCAGCTAGTATACCAGGTGATGTACTAGGAACTGAAGACAAAAAGCATGTTATCTTTGGACGATTTTCAGATGAACCTGCAGGTAGTGGCAAGATCAGAGCAAACAATGTTAGCAGTGGAGTAAGCCCTCCAGTGGAAGAGGCTGTTCTTTGCAAGGAAAAACATGACCAGAATAGGAATTTCTTCTGCCTCGATGATTCAAGTTCAGGGGAACTAAATACTTCCTCCACTTCACAGGGCTCACGATCTTGCCCGATTATGCTTTTGAAGAATAGCAACGGAAGAGGCTTGCATGTTGGATGA

Protein Analysis

495

Amino Acids

55.04

Weight (kDa)

9.48

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
Acc36I ACCTGC 2 cut(s) 1253, 1267
AccB7I CCANNNNNTGG 1 cut(s) 70
AccI GTMKAC 2 cut(s) 1064, 1192
AciI CCGC 4 cut(s) 44, 174, 388, 706
AclWI GGATC 4 cut(s) 958, 979, 1124, 1137
AcoI YGGCCR 1 cut(s) 715
AcsI RAATTY 3 cut(s) 761, 1092, 1360
AcuI CTGAAG 2 cut(s) 861, 1236
AfaI GTAC 3 cut(s) 352, 781, 1206
AfiI CCNNNNNNNGG 5 cut(s) 70, 325, 427, 529, 1315
AflIII ACRYGT 1 cut(s) 370
AjnI CCWGG 2 cut(s) 995, 1195
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AloI GAACNNNNNNTCC 2 cut(s) 477, 509
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 4 cut(s) 92, 150, 582, 1021
AlwI GGATC 4 cut(s) 958, 979, 1124, 1137
AoxI GGCC 3 cut(s) 533, 707, 715
ApeKI GCWGC 3 cut(s) 740, 805, 1037
ApoI RAATTY 3 cut(s) 761, 1092, 1360
AseI ATTAAT 1 cut(s) 903
Asp700I GAANNNNTTC 3 cut(s) 389, 473, 1364
AspS9I GGNCC 2 cut(s) 453, 533
AsuHPI GGTGA 2 cut(s) 184, 1211
AvaII GGWCC 1 cut(s) 453
BalI TGGCCA 1 cut(s) 717
BamHI GGATCC 1 cut(s) 1129
BanII GRGCYC 1 cut(s) 1424
BbsI GAAGAC 1 cut(s) 1224
Bbv12I GWGCWC 1 cut(s) 667
BbvI GCAGC 3 cut(s) 752, 817, 1024
BccI CCATC 4 cut(s) 5, 341, 476, 874
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 877, 911
BciT130I CCWGG 2 cut(s) 997, 1197
BciVI GTATCC 1 cut(s) 813
BclI TGATCA 1 cut(s) 226
BcoDI GTCTC 4 cut(s) 92, 150, 582, 1021
BfaI CTAG 4 cut(s) 773, 1002, 1188, 1208
BfmI CTRYAG 2 cut(s) 1161, 1260
BfuAI ACCTGC 2 cut(s) 1253, 1267
BfuI GTATCC 1 cut(s) 813
BisI GCNGC 4 cut(s) 707, 741, 806, 1038
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 4 cut(s) 708, 742, 807, 1039
Bme1390I CCNGG 2 cut(s) 997, 1197
Bme18I GGWCC 1 cut(s) 453
BmgT120I GGNCC 2 cut(s) 453, 533
BmiI GGNNCC 3 cut(s) 454, 534, 1131
BmrFI CCNGG 2 cut(s) 997, 1197
BmrI ACTGGG 1 cut(s) 1054
BmsI GCATC 2 cut(s) 490, 1156
BmuI ACTGGG 1 cut(s) 1054
BpiI GAAGAC 1 cut(s) 1224
BpmI CTGGAG 2 cut(s) 237, 1296
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 3 cut(s) 116, 938, 1155
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 426, 1041
BsaWI WCCGGW 1 cut(s) 141
BsaXI ACNNNNNCTCC 6 cut(s) 235, 265, 477, 507, 530, 560
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 325, 427, 529, 1315
Bse1I ACTGG 2 cut(s) 1060, 1313
Bse3DI GCAATG 1 cut(s) 245
BseBI CCWGG 2 cut(s) 997, 1197
BseDI CCNNGG 2 cut(s) 426, 1041
BseGI GGATG 3 cut(s) 352, 487, 1054
BseLI CCNNNNNNNGG 5 cut(s) 70, 325, 427, 529, 1315
BseMI GCAATG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 1060, 1313
BseRI GAGGAG 2 cut(s) 570, 1100
BseXI GCAGC 3 cut(s) 752, 817, 1024
BsgI GTGCAG 1 cut(s) 319
BshFI GGCC 3 cut(s) 535, 709, 717
BsiHKAI GWGCWC 1 cut(s) 667
BsiSI CCGG 2 cut(s) 142, 536
BslFI GGGAC 2 cut(s) 905, 1099
BslI CCNNNNNNNGG 5 cut(s) 70, 325, 427, 529, 1315
BsmAI GTCTC 4 cut(s) 92, 150, 582, 1021
BsmFI GGGAC 2 cut(s) 905, 1099
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 3 cut(s) 535, 709, 717
Bso31I GGTCTC 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 667, 1424
Bsp143I GATC 7 cut(s) 226, 799, 950, 984, 1129, 1275, 1427
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 4 cut(s) 44, 174, 388, 706
BspANI GGCC 3 cut(s) 535, 709, 717
BspCNI CTCAG 1 cut(s) 295
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 3 cut(s) 454, 534, 1131
BspMAI CTGCAG 2 cut(s) 1165, 1264
BspMI ACCTGC 2 cut(s) 1253, 1267
BspPI GGATC 4 cut(s) 958, 979, 1124, 1137
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 245
BsrI ACTGG 2 cut(s) 1060, 1313
BssECI CCNNGG 2 cut(s) 426, 1041
BssMI GATC 7 cut(s) 226, 799, 950, 984, 1129, 1275, 1427
BssNAI GTATAC 1 cut(s) 1193
BssT1I CCWWGG 2 cut(s) 426, 1041
Bst1107I GTATAC 1 cut(s) 1193
Bst2UI CCWGG 2 cut(s) 997, 1197
Bst4CI ACNGT 2 cut(s) 698, 749
Bst6I CTCTTC 3 cut(s) 796, 1314, 1459
BstC8I GCNNGC 4 cut(s) 381, 505, 868, 1472
BstDEI CTNAG 2 cut(s) 303, 362
BstENI CCTNNNNNAGG 1 cut(s) 323
BstF5I GGATG 3 cut(s) 352, 487, 1054
BstKTI GATC 7 cut(s) 229, 802, 953, 987, 1132, 1278, 1430
BstMAI GTCTC 4 cut(s) 92, 150, 582, 1021
BstMBI GATC 7 cut(s) 226, 799, 950, 984, 1129, 1275, 1427
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstNI CCWGG 2 cut(s) 997, 1197
BstNSI RCATGY 5 cut(s) 374, 383, 827, 1232, 1478
BstSCI CCNGG 2 cut(s) 995, 1195
BstSFI CTRYAG 2 cut(s) 1161, 1260
BstV1I GCAGC 3 cut(s) 752, 817, 1024
BstV2I GAAGAC 1 cut(s) 1224
BstX2I RGATCY 1 cut(s) 1129
BstYI RGATCY 1 cut(s) 1129
BstZ17I GTATAC 1 cut(s) 1193
BsuI GTATCC 1 cut(s) 813
BsuRI GGCC 3 cut(s) 535, 709, 717
BtgZI GCGATG 1 cut(s) 771
BtsCI GGATG 3 cut(s) 352, 487, 1054
BtsI GCAGTG 2 cut(s) 1158, 1303
BtsIMutI CAGTG 5 cut(s) 561, 837, 1158, 1303, 1320
BveI ACCTGC 2 cut(s) 1253, 1267
Cac8I GCNNGC 4 cut(s) 381, 505, 868, 1472
CciI TCATGA 1 cut(s) 496
Cfr13I GGNCC 2 cut(s) 453, 533
CsiI ACCWGGT 1 cut(s) 1195
Csp6I GTAC 3 cut(s) 351, 780, 1205
CviQI GTAC 3 cut(s) 351, 780, 1205
DdeI CTNAG 2 cut(s) 303, 362
DpnI GATC 7 cut(s) 228, 801, 952, 986, 1131, 1277, 1429
DpnII GATC 7 cut(s) 226, 799, 950, 984, 1129, 1275, 1427
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 715
Eam1104I CTCTTC 3 cut(s) 796, 1314, 1459
EarI CTCTTC 3 cut(s) 796, 1314, 1459
EciI GGCGGA 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 426, 1041
Eco24I GRGCYC 1 cut(s) 1424
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 453
Eco57I CTGAAG 2 cut(s) 861, 1236
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 761
EcoRII CCWGG 2 cut(s) 995, 1195
EcoT14I CCWWGG 2 cut(s) 426, 1041
EcoT38I GRGCYC 1 cut(s) 1424
ErhI CCWWGG 2 cut(s) 426, 1041
FaqI GGGAC 2 cut(s) 905, 1099
FbaI TGATCA 1 cut(s) 226
FblI GTMKAC 2 cut(s) 1064, 1192
Fnu4HI GCNGC 4 cut(s) 707, 741, 806, 1038
FokI GGATG 3 cut(s) 359, 494, 1061
FriOI GRGCYC 1 cut(s) 1424
Fsp4HI GCNGC 4 cut(s) 707, 741, 806, 1038
FspBI CTAG 4 cut(s) 773, 1002, 1188, 1208
GluI GCNGC 4 cut(s) 707, 741, 806, 1038
GsuI CTGGAG 2 cut(s) 237, 1296
HaeIII GGCC 3 cut(s) 535, 709, 717
HapII CCGG 2 cut(s) 142, 536
HincII GTYRAC 2 cut(s) 588, 926
HindII GTYRAC 2 cut(s) 588, 926
HindIII AAGCTT 2 cut(s) 404, 843
HinfI GANTC 4 cut(s) 77, 542, 1055, 1379
HpaII CCGG 2 cut(s) 142, 536
HphI GGTGA 2 cut(s) 184, 1211
Hpy166II GTNNAC 6 cut(s) 393, 588, 694, 926, 1065, 1193
Hpy188I TCNGA 7 cut(s) 20, 91, 150, 231, 598, 1252, 1280
Hpy188III TCNNGA 7 cut(s) 254, 456, 466, 497, 898, 1172, 1425
Hpy8I GTNNAC 6 cut(s) 393, 588, 694, 926, 1065, 1193
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 7 cut(s) 431, 441, 720, 746, 980, 1107, 1144
HpyCH4III ACNGT 2 cut(s) 698, 749
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 2 cut(s) 303, 362
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 7 cut(s) 226, 799, 950, 984, 1129, 1275, 1427
LmnI GCTCC 2 cut(s) 662, 691
Lsp1109I GCAGC 3 cut(s) 752, 817, 1024
LweI GCATC 2 cut(s) 490, 1156
MabI ACCWGGT 1 cut(s) 1195
MaeI CTAG 4 cut(s) 773, 1002, 1188, 1208
MaeIII GTNAC 3 cut(s) 190, 413, 546
MalI GATC 7 cut(s) 228, 801, 952, 986, 1131, 1277, 1429
MboI GATC 7 cut(s) 226, 799, 950, 984, 1129, 1275, 1427
MboII GAAGA 9 cut(s) 174, 177, 283, 783, 1229, 1331, 1357, 1462, 1476
MfeI CAATTG 3 cut(s) 111, 524, 681
MflI RGATCY 1 cut(s) 1129
MhlI GDGCHC 2 cut(s) 667, 1424
MlsI TGGCCA 1 cut(s) 717
MluNI TGGCCA 1 cut(s) 717
MmeI TCCRAC 2 cut(s) 928, 1459
Mox20I TGGCCA 1 cut(s) 717
MroXI GAANNNNTTC 3 cut(s) 389, 473, 1364
MscI TGGCCA 1 cut(s) 717
MseI TTAA 4 cut(s) 309, 903, 1077, 1119
MslI CAYNNNNRTG 1 cut(s) 569
Msp20I TGGCCA 1 cut(s) 717
MspA1I CMGCKG 2 cut(s) 743, 1037
MspI CCGG 2 cut(s) 142, 536
MspR9I CCNGG 2 cut(s) 997, 1197
MunI CAATTG 3 cut(s) 111, 524, 681
Mva1269I GAATGC 1 cut(s) 288
MvaI CCWGG 2 cut(s) 997, 1197
MwoI GCNNNNNNNGC 1 cut(s) 385
NdeII GATC 7 cut(s) 226, 799, 950, 984, 1129, 1275, 1427
NlaIV GGNNCC 3 cut(s) 454, 534, 1131
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 5 cut(s) 374, 383, 827, 1232, 1478
PaeI GCATGC 1 cut(s) 383
PagI TCATGA 1 cut(s) 496
PciI ACATGT 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PctI GAATGC 1 cut(s) 288
PdmI GAANNNNTTC 3 cut(s) 389, 473, 1364
PfeI GAWTC 4 cut(s) 77, 542, 1055, 1379
PflMI CCANNNNNTGG 1 cut(s) 70
PkrI GCNGC 4 cut(s) 708, 742, 807, 1039
PscI ACATGT 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 903
Psp6I CCWGG 2 cut(s) 995, 1195
PspGI CCWGG 2 cut(s) 995, 1195
PspN4I GGNNCC 3 cut(s) 454, 534, 1131
PspPI GGNCC 2 cut(s) 453, 533
PstI CTGCAG 2 cut(s) 1165, 1264
PsuI RGATCY 1 cut(s) 1129
PvuII CAGCTG 2 cut(s) 743, 1037
RsaI GTAC 3 cut(s) 352, 781, 1206
RsaNI GTAC 3 cut(s) 351, 780, 1205
RseI CAYNNNNRTG 1 cut(s) 569
SaqAI TTAA 4 cut(s) 309, 903, 1077, 1119
SatI GCNGC 4 cut(s) 707, 741, 806, 1038
Sau3AI GATC 7 cut(s) 226, 799, 950, 984, 1129, 1275, 1427
Sau96I GGNCC 2 cut(s) 453, 533
SbfI CCTGCAGG 1 cut(s) 1264
ScrFI CCNGG 2 cut(s) 997, 1197
SdaI CCTGCAGG 1 cut(s) 1264
SduI GDGCHC 2 cut(s) 667, 1424
SexAI ACCWGGT 1 cut(s) 1195
SfaNI GCATC 2 cut(s) 490, 1156
SfcI CTRYAG 2 cut(s) 1161, 1260
SinI GGWCC 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 569
SmlI CTYRAG 3 cut(s) 95, 917, 1170
SmoI CTYRAG 3 cut(s) 95, 917, 1170
SphI GCATGC 1 cut(s) 383
Sse8387I CCTGCAGG 1 cut(s) 1264
SsiI CCGC 4 cut(s) 44, 174, 388, 706
SspMI CTAG 4 cut(s) 773, 1002, 1188, 1208
StyD4I CCNGG 2 cut(s) 995, 1195
StyI CCWWGG 2 cut(s) 426, 1041
TaaI ACNGT 2 cut(s) 698, 749
TaqI TCGA 3 cut(s) 49, 953, 1374
TatI WGTACW 1 cut(s) 1204
TauI GCSGC 1 cut(s) 709
TfiI GAWTC 4 cut(s) 77, 542, 1055, 1379
Tru1I TTAA 4 cut(s) 309, 903, 1077, 1119
Tru9I TTAA 4 cut(s) 309, 903, 1077, 1119
TscAI CASTG 5 cut(s) 561, 844, 1165, 1303, 1320
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 3 cut(s) 740, 805, 1037
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 7 cut(s) 24, 329, 485, 641, 774, 1061, 1269
TspGWI ACGGA 2 cut(s) 573, 1476
TspRI CASTG 5 cut(s) 561, 844, 1165, 1303, 1320
Van91I CCANNNNNTGG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 453
VspI ATTAAT 1 cut(s) 903
XagI CCTNNNNNAGG 1 cut(s) 323
XapI RAATTY 3 cut(s) 761, 1092, 1360
XceI RCATGY 5 cut(s) 374, 383, 827, 1232, 1478
XmiI GTMKAC 2 cut(s) 1064, 1192
XmnI GAANNNNTTC 3 cut(s) 389, 473, 1364
XspI CTAG 4 cut(s) 773, 1002, 1188, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.