Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Forward (+)

18845810 .. 18852188

Gene Structure 6379 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2559 bp

ATGGCTACCGATGGACACAAACGGTCACAAGTTTCATCAGCTCCGCCTCGAAAATTAAGTGTGCAAAAGTTTGCAGAAGCGCGAGCTACAGAACTTGAGACGCTCCATACAATTGTAACTGACCGATTGAAGAATGATTTCCGGTCTCAAAGAAGCAAGAGAAGAAGGACCACTGCTTATGACAATCAAGCCGCAAAAAAGAGAAGTAGAAAAAAGCAGAAGCATGGAGTAGTTGATCAAAGCAATGCTTTTCTTTCAGAGAAGGATGATAAGAATGTTCCTCGTCGCATTCGTCGGAGGGCTGAGCTTAAAATGAACCTTGAAAAGGGTTTCTGCACCTCAGGCGATGGAACGAAGAGGCTTAGAACACATGTTTGGCATGCCAAGCGGTTCACAATGACTAAGCTTTGGGGTTATTATCTTCCCCTAGGTTTGCAGGGCAGTGGAAGGGGTTCCAGAGCTGTCCTGAAGTGGTTCAAAGCTGGAGTGCTTGCCCATGATGCAAGCTATCATGTAGCTATGCAATTGGAGGGTAAAGAGGAATCGTTACTATCAGTTTTAAGAATGGTATTGGTGCCTTCTCCATCAGCTCGTTCTGAAGAAATTACCCGTTCCATTATTTCTGGGGCCATATATGATACTGCAATGCTTCATCAGTTTGGAGCACCATGTTCAACACCAATTGCACCTGTTACCTATATGTGGCGGCCCACTTGCCAACAGGATAAAGATAATGATGCTTCTGCTGTCTATAATTGTGTTATATCTAATGGTCTAGAGGTTACAGAGCGCTCTTCTACCTTTCGCCATCTTTGGGTGTGGATACATGCTTCTGCTTTCCCTGCAGGATATGATGCGCTTAAATTAGCTTGCCAAAAAGAGATGGAAGAGAGCGGCAGCGTGATTAAGTGTCTCTCACTTGAGGGCAAACTCGCAAAATTAGAAATTATGGGATCAAAAGCATTTCAACTCCTCCAAAGGACATTGTGCCCTGTTACAAGAAGTAAGGACCATACGTGGGCATTGAATAGACATTCAGTTGCGGAAGCTTCAGATGATTCCCATTCTAAGTATGTGCTTGAAAATGAAGAAGACATTCCTTCCCATGCAGTGATGTCTCTTAGAGTCAAGGATCCTCGTGTGTTCATAGACAAACGAAAGACTGCAAATGCTGCTGAGTCAGGTTCTGCTAGTATACTAGCTGATGTACAAGGAACTGAAGACAAAGAGCATTTTGTCTATGAAAATATTTCAGAAAAGAAAGAAGTGATACTGTCCTTGATGGGGTCAGAAGCCGAAGGTACTAGCATGCTCGCAGAAAAGAATTTGTGGGATGTTAACAGAGGTATAAGTCCTCCAGTGGAAGAGACAGTTATTTGCAAGGAAAGATATGACCAGAATAAAAACCTCTTCTGTCTTGATGAATCAAGTTCAAGGGTACTAAATACTTCAACCAATTTGCAGTGCTCAAGATCTTGTCCAATTCTGCTTTTGAAAAATAACGACAGAAGGGGCATGCATAATGGATGGTCTGTAATTCTACCCTTGAGCTGGGTCAGGGCATTTTGGATTCCTCTTATCTCCAAGGGGGCCAATGTGATAGGTTTGAGGGAGAAGCACTGGATTTCATGTGACGTAGGATTGCCATATTTTCCTTCGGATTTCCCGGATTGCCATGCGTATTTATGCCTTAAAGAAACTGAAAGTGCTGCATCCAATGTTAAAGACGAACTTCGTCCTCCAACACAAAGACCTTTGAGGGTTCCAATTTTACCACCATGGAATAGTATCCAAGTTTCTTTAAGGGAAGGACCCACCAAAATGCAAAATGCTGAAACTTTTAGACTGGAAGATGCAGTCAGAAACAATTCATCATCTAACTCGGAGTGTGAAAATTATGATGTTACATATTTTGTAGCACGGACATCTTTTTCACTGAAAAATTTCTTGAATGAATTCCAAGGCTGTAAGTTACGCCTACGTCCTCATGTGACCGATAAGTCGACAAGCTTTACTGCATTTATGAGGGATGAAAGCAACCTTGGGCATGGCCAAAATGGGATTACAAAATTTAGTTACAACCACAAGTTATGTTTTGTAAGAGTATTTCTCCATGCTTACAAAGAAGGGTTTTTTGAAGAGGGAGCAGTTGTTTGTGCACCTCAATTGACTGACATCTCACTCTGGACAAGATCAGAGAATATTGATGGAGGACTACAAGTTCCTCAATCTGCCGTGAGATCCTATTTCAAAGAGCAATCTTCTGGTAAGTGGGAACTCCAACTACCAGGGGATACTATCAGTAGAGAATCTCATCGTTGGCCTATAGGCTTTGTGACCACTGGTTTTGTTCGAGGGAGCAAGAAAACAGTGGCACAAGCTTTTTGTGAGGCAGTACTACTTGCTCATATTAGAGGGGAACAGTGGGATATGATGCCAATTAAACGGAGACGGAAGGAAATATATGTTCTTGTGAGGAATTTAAGATCCTCAGCATATAGACTAGCTCTTGCCACTATCGTCCTGGAAGATCAGGAAGAAGATGTTGAATTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

853

Amino Acids

96.55

Weight (kDa)

9.1

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POP1_N	PF06978	121 - 178	1.1e-10	Ribonucleases P/MRP protein subunit POP1, N-terminal
POPLD	PF08170	509 - 585	6.7e-16	POPLD (NUC188) domain
POP1_C	PF22770	751 - 841	3.8e-07	POP1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1999
AccB1I	GGYRCC	1 cut(s)	574
AccBSI	CCGCTC	1 cut(s)	894
AccI	GTMKAC	2 cut(s)	1195, 2003
AccII	CGCG	1 cut(s)	82
AciI	CCGC	6 cut(s)	44, 192, 388, 706, 894, 1043
AclWI	GGATC	5 cut(s)	961, 1127, 1140, 2235, 2481
AcoI	YGGCCR	1 cut(s)	2050
AcsI	RAATTY	6 cut(s)	1324, 1942, 1955, 2069, 2479, 2549
AcuI	CTGAAG	4 cut(s)	488, 618, 1035, 1239
AfaI	GTAC	4 cut(s)	1209, 1303, 1440, 2397
AfeI	AGCGCT	1 cut(s)	791
AfiI	CCNNNNNNNGG	6 cut(s)	325, 702, 814, 1018, 1284, 1551
AflIII	ACRYGT	1 cut(s)	370
AjnI	CCWGG	2 cut(s)	2287, 2523
AjuI	GAANNNNNNNTTGG	4 cut(s)	358, 390, 2025, 2057
AloI	GAACNNNNNNTCC	2 cut(s)	2205, 2237
Alw21I	GWGCWC	3 cut(s)	667, 1469, 2161
Alw26I	GTCTC	6 cut(s)	92, 150, 917, 1122, 1361, 2443
Alw44I	GTGCAC	1 cut(s)	2157
AlwI	GGATC	5 cut(s)	961, 1127, 1140, 2235, 2481
AlwNI	CAGNNNCTG	1 cut(s)	1187
Aor51HI	AGCGCT	1 cut(s)	791
AoxI	GGCC	5 cut(s)	627, 707, 1590, 2050, 2321
ApaLI	GTGCAC	1 cut(s)	2157
ApeKI	GCWGC	3 cut(s)	897, 1172, 1709
ApoI	RAATTY	6 cut(s)	1324, 1942, 1955, 2069, 2479, 2549
Asp700I	GAANNNNTTC	7 cut(s)	137, 451, 473, 1095, 1867, 1943, 1955
AspA2I	CCTAGG	1 cut(s)	427
AspLEI	GCGC	3 cut(s)	82, 792, 859
AspS9I	GGNCC	6 cut(s)	168, 627, 708, 1009, 1590, 1811
AsuC2I	CCSGG	1 cut(s)	1667
AvaII	GGWCC	3 cut(s)	168, 1009, 1811
AvrII	CCTAGG	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	340
BaeGI	GKGCMC	2 cut(s)	992, 2161
BalI	TGGCCA	1 cut(s)	2052
BamHI	GGATCC	1 cut(s)	1132
BanI	GGYRCC	1 cut(s)	574
BauI	CACGAG	1 cut(s)	1137
BbsI	GAAGAC	2 cut(s)	1098, 1227
Bbv12I	GWGCWC	3 cut(s)	667, 1469, 2161
BbvCI	CCTCAGC	1 cut(s)	2491
BbvI	GCAGC	3 cut(s)	909, 1159, 1696
BccI	CCATC	8 cut(s)	5, 341, 592, 816, 877, 1276, 1521, 2201
BceAI	ACGGC	1 cut(s)	2219
BciT130I	CCWGG	2 cut(s)	2289, 2525
BciVI	GTATCC	3 cut(s)	816, 1799, 2287
BclI	TGATCA	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	1667
BcoDI	GTCTC	6 cut(s)	92, 150, 917, 1122, 1361, 2443
BfaI	CTAG	6 cut(s)	428, 776, 1191, 1199, 1305, 2504
BfmI	CTRYAG	3 cut(s)	87, 843, 2325
BfoI	RGCGCY	1 cut(s)	793
BfuI	GTATCC	3 cut(s)	816, 1799, 2287
BglII	AGATCT	1 cut(s)	1472
BisI	GCNGC	6 cut(s)	192, 707, 895, 898, 1173, 1710
BlnI	CCTAGG	1 cut(s)	427
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	6 cut(s)	193, 708, 896, 899, 1174, 1711
BmcAI	AGTACT	1 cut(s)	2397
Bme1390I	CCNGG	3 cut(s)	1667, 2289, 2525
Bme18I	GGWCC	3 cut(s)	168, 1009, 1811
BmgT120I	GGNCC	6 cut(s)	168, 627, 708, 1009, 1590, 1811
BmiI	GGNNCC	7 cut(s)	454, 576, 628, 1134, 1591, 1764, 1813
BmrFI	CCNGG	3 cut(s)	1667, 2289, 2525
BmsI	GCATC	6 cut(s)	490, 727, 844, 1721, 1843, 2424
BpiI	GAAGAC	2 cut(s)	1098, 1227
BplI	GAGNNNNNCTC	2 cut(s)	2094, 2126
BpmI	CTGGAG	2 cut(s)	504, 1341
Bpu10I	CCTNAGC	1 cut(s)	2491
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	4 cut(s)	116, 941, 1453, 1567
BpuMI	CCSGG	1 cut(s)	1667
BsaAI	YACGTR	1 cut(s)	1017
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	6 cut(s)	427, 1584, 1778, 1960, 2041, 2288
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	2136, 2166
Bsc4I	CCNNNNNNNGG	6 cut(s)	325, 702, 814, 1018, 1284, 1551
Bse1I	ACTGG	4 cut(s)	1358, 1625, 1851, 2347
Bse21I	CCTNAGG	1 cut(s)	340
Bse3DI	GCAATG	2 cut(s)	250, 651
BseBI	CCWGG	2 cut(s)	2289, 2525
BseDI	CCNNGG	6 cut(s)	427, 1584, 1778, 1960, 2041, 2288
BseGI	GGATG	5 cut(s)	271, 1339, 1532, 1712, 2035
BseLI	CCNNNNNNNGG	6 cut(s)	325, 702, 814, 1018, 1284, 1551
BseMI	GCAATG	2 cut(s)	250, 651
BseMII	CTCAG	4 cut(s)	294, 354, 1167, 2505
BseNI	ACTGG	4 cut(s)	1358, 1625, 1851, 2347
BseRI	GAGGAG	1 cut(s)	962
BseSI	GKGCMC	2 cut(s)	992, 2161
BseXI	GCAGC	3 cut(s)	909, 1159, 1696
BseYI	CCCAGC	1 cut(s)	1551
BsgI	GTGCAG	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	5 cut(s)	629, 709, 1592, 2052, 2323
BshNI	GGYRCC	1 cut(s)	574
BsiHKAI	GWGCWC	3 cut(s)	667, 1469, 2161
BsiSI	CCGG	2 cut(s)	142, 1667
BslI	CCNNNNNNNGG	6 cut(s)	325, 702, 814, 1018, 1284, 1551
BsmAI	GTCTC	6 cut(s)	92, 150, 917, 1122, 1361, 2443
BsmBI	CGTCTC	2 cut(s)	92, 2443
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	5 cut(s)	629, 709, 1592, 2052, 2323
Bso31I	GGTCTC	1 cut(s)	150
Bsp1286I	GDGCHC	4 cut(s)	667, 992, 1469, 2161
Bsp1407I	TGTACA	1 cut(s)	1207
Bsp143I	GATC	8 cut(s)	235, 953, 1132, 1472, 2192, 2240, 2486, 2530
Bsp1720I	GCTNAGC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	1778
BspACI	CCGC	6 cut(s)	44, 192, 388, 706, 894, 1043
BspANI	GGCC	5 cut(s)	629, 709, 1592, 2052, 2323
BspCNI	CTCAG	4 cut(s)	295, 353, 1168, 2504
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	7 cut(s)	454, 576, 628, 1134, 1591, 1764, 1813
BspMAI	CTGCAG	1 cut(s)	847
BspPI	GGATC	5 cut(s)	961, 1127, 1140, 2235, 2481
BspQI	GCTCTTC	1 cut(s)	799
BspT107I	GGYRCC	1 cut(s)	574
BspTNI	GGTCTC	1 cut(s)	150
BsrBI	CCGCTC	1 cut(s)	894
BsrDI	GCAATG	2 cut(s)	250, 651
BsrGI	TGTACA	1 cut(s)	1207
BsrI	ACTGG	4 cut(s)	1358, 1625, 1851, 2347
BssECI	CCNNGG	6 cut(s)	427, 1584, 1778, 1960, 2041, 2288
BssMI	GATC	8 cut(s)	235, 953, 1132, 1472, 2192, 2240, 2486, 2530
BssNAI	GTATAC	1 cut(s)	1196
BssSI	CACGAG	1 cut(s)	1137
BssT1I	CCWWGG	5 cut(s)	427, 1584, 1778, 1960, 2041
Bst1107I	GTATAC	1 cut(s)	1196
Bst2BI	CACGAG	1 cut(s)	1137
Bst2UI	CCWGG	2 cut(s)	2289, 2525
Bst4CI	ACNGT	5 cut(s)	24, 1275, 1372, 2371, 2424
Bst6I	CTCTTC	6 cut(s)	350, 799, 882, 1359, 1415, 2133
BstAPI	GCANNNNNTGC	1 cut(s)	1172
BstAUI	TGTACA	1 cut(s)	1207
BstBAI	YACGTR	1 cut(s)	1017
BstC8I	GCNNGC	8 cut(s)	84, 381, 492, 505, 871, 1310, 1314, 1517
BstDEI	CTNAG	8 cut(s)	303, 340, 362, 402, 1068, 1121, 1176, 2491
BstDSI	CCRYGG	1 cut(s)	1778
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	5 cut(s)	271, 1339, 1532, 1712, 2035
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	793
BstHHI	GCGC	3 cut(s)	82, 792, 859
BstKTI	GATC	8 cut(s)	238, 956, 1135, 1475, 2195, 2243, 2489, 2533
BstMAI	GTCTC	6 cut(s)	92, 150, 917, 1122, 1361, 2443
BstMBI	GATC	8 cut(s)	235, 953, 1132, 1472, 2192, 2240, 2486, 2530
BstMWI	GCNNNNNNNGC	5 cut(s)	342, 385, 500, 842, 1172
BstNI	CCWGG	2 cut(s)	2289, 2525
BstNSI	RCATGY	5 cut(s)	374, 383, 830, 1312, 1519
BstSCI	CCNGG	3 cut(s)	1665, 2287, 2523
BstSFI	CTRYAG	3 cut(s)	87, 843, 2325
BstSLI	GKGCMC	2 cut(s)	992, 2161
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	3 cut(s)	909, 1159, 1696
BstV2I	GAAGAC	2 cut(s)	1098, 1227
BstX2I	RGATCY	4 cut(s)	1132, 1472, 2240, 2486
BstYI	RGATCY	4 cut(s)	1132, 1472, 2240, 2486
BstZ17I	GTATAC	1 cut(s)	1196
Bsu36I	CCTNAGG	1 cut(s)	340
BsuI	GTATCC	3 cut(s)	816, 1799, 2287
BsuRI	GGCC	5 cut(s)	629, 709, 1592, 2052, 2323
BtgI	CCRYGG	1 cut(s)	1778
BtgZI	GCGATG	1 cut(s)	360
BtsCI	GGATG	5 cut(s)	271, 1339, 1532, 1712, 2035
BtsI	GCAGTG	4 cut(s)	171, 448, 1116, 1469
Cac8I	GCNNGC	8 cut(s)	84, 381, 492, 505, 871, 1310, 1314, 1517
CaiI	CAGNNNCTG	1 cut(s)	1187
CfoI	GCGC	3 cut(s)	82, 792, 859
Cfr13I	GGNCC	6 cut(s)	168, 627, 708, 1009, 1590, 1811
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	4 cut(s)	1208, 1302, 1439, 2396
CspCI	CAANNNNNGTGG	2 cut(s)	2329, 2364
CviQI	GTAC	4 cut(s)	1208, 1302, 1439, 2396
DdeI	CTNAG	8 cut(s)	303, 340, 362, 402, 1068, 1121, 1176, 2491
DpnI	GATC	8 cut(s)	237, 955, 1134, 1474, 2194, 2242, 2488, 2532
DpnII	GATC	8 cut(s)	235, 953, 1132, 1472, 2192, 2240, 2486, 2530
DrdI	GACNNNNNNGTC	1 cut(s)	1999
DseDI	GACNNNNNNGTC	1 cut(s)	1999
EaeI	YGGCCR	1 cut(s)	2050
Eam1104I	CTCTTC	6 cut(s)	350, 799, 882, 1359, 1415, 2133
EarI	CTCTTC	6 cut(s)	350, 799, 882, 1359, 1415, 2133
EciI	GGCGGA	1 cut(s)	33
Eco130I	CCWWGG	5 cut(s)	427, 1584, 1778, 1960, 2041
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	3 cut(s)	168, 1009, 1811
Eco47III	AGCGCT	1 cut(s)	791
Eco57I	CTGAAG	4 cut(s)	488, 618, 1035, 1239
Eco81I	CCTNAGG	1 cut(s)	340
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	1811
EcoRI	GAATTC	1 cut(s)	1955
EcoRII	CCWGG	2 cut(s)	2287, 2523
EcoT14I	CCWWGG	5 cut(s)	427, 1584, 1778, 1960, 2041
EcoT22I	ATGCAT	1 cut(s)	1521
ErhI	CCWWGG	5 cut(s)	427, 1584, 1778, 1960, 2041
Esp3I	CGTCTC	2 cut(s)	92, 2443
FalI	AAGNNNNNCTT	4 cut(s)	232, 264, 1716, 1748
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	2 cut(s)	1195, 2003
Fnu4HI	GCNGC	6 cut(s)	192, 707, 895, 898, 1173, 1710
FokI	GGATG	5 cut(s)	278, 1346, 1539, 1699, 2042
Fsp4HI	GCNGC	6 cut(s)	192, 707, 895, 898, 1173, 1710
FspBI	CTAG	6 cut(s)	428, 776, 1191, 1199, 1305, 2504
GlaI	GCGC	3 cut(s)	81, 791, 858
GluI	GCNGC	6 cut(s)	192, 707, 895, 898, 1173, 1710
GsaI	CCCAGC	1 cut(s)	1555
GsuI	CTGGAG	2 cut(s)	504, 1341
HaeII	RGCGCY	1 cut(s)	793
HaeIII	GGCC	5 cut(s)	629, 709, 1592, 2052, 2323
HapII	CCGG	2 cut(s)	142, 1667
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	3 cut(s)	82, 792, 859
Hin6I	GCGC	3 cut(s)	80, 790, 857
HinP1I	GCGC	3 cut(s)	80, 790, 857
HincII	GTYRAC	2 cut(s)	1339, 2004
HindII	GTYRAC	2 cut(s)	1339, 2004
HindIII	AAGCTT	4 cut(s)	404, 1047, 2008, 2379
HinfI	GANTC	7 cut(s)	542, 1058, 1125, 1178, 1424, 1570, 2309
HpaI	GTTAAC	1 cut(s)	1339
HpaII	CCGG	2 cut(s)	142, 1667
Hpy166II	GTNNAC	5 cut(s)	393, 1196, 1339, 2004, 2159
Hpy188III	TCNNGA	8 cut(s)	456, 466, 776, 1418, 1470, 1948, 2185, 2534
Hpy8I	GTNNAC	5 cut(s)	393, 1196, 1339, 2004, 2159
Hpy99I	CGWCG	2 cut(s)	288, 297
HpyCH4III	ACNGT	5 cut(s)	24, 1275, 1372, 2371, 2424
HpyCH4IV	ACGT	3 cut(s)	1016, 1635, 1981
HpyF10VI	GCNNNNNNNGC	5 cut(s)	342, 385, 500, 842, 1172
HpyF3I	CTNAG	8 cut(s)	303, 340, 362, 402, 1068, 1121, 1176, 2491
HpySE526I	ACGT	3 cut(s)	1016, 1635, 1981
HspAI	GCGC	3 cut(s)	80, 790, 857
Ksp22I	TGATCA	1 cut(s)	235
KspAI	GTTAAC	1 cut(s)	1339
Kzo9I	GATC	8 cut(s)	235, 953, 1132, 1472, 2192, 2240, 2486, 2530
LguI	GCTCTTC	1 cut(s)	799
LmnI	GCTCC	5 cut(s)	46, 108, 662, 2144, 2358
Lsp1109I	GCAGC	3 cut(s)	909, 1159, 1696
LweI	GCATC	6 cut(s)	490, 727, 844, 1721, 1843, 2424
MaeI	CTAG	6 cut(s)	428, 776, 1191, 1199, 1305, 2504
MaeII	ACGT	3 cut(s)	1016, 1635, 1981
MalI	GATC	8 cut(s)	237, 955, 1134, 1474, 2194, 2242, 2488, 2532
MbiI	CCGCTC	1 cut(s)	894
MboI	GATC	8 cut(s)	235, 953, 1132, 1472, 2192, 2240, 2486, 2530
MfeI	CAATTG	4 cut(s)	111, 524, 681, 2165
MflI	RGATCY	4 cut(s)	1132, 1472, 2240, 2486
MhlI	GDGCHC	4 cut(s)	667, 992, 1469, 2161
MlsI	TGGCCA	1 cut(s)	2052
MluNI	TGGCCA	1 cut(s)	2052
MlyI	GAGTC	2 cut(s)	1134, 1187
MmeI	TCCRAC	3 cut(s)	275, 1766, 2305
Mox20I	TGGCCA	1 cut(s)	2052
Mph1103I	ATGCAT	1 cut(s)	1521
MroXI	GAANNNNTTC	7 cut(s)	137, 451, 473, 1095, 1867, 1943, 1955
MscI	TGGCCA	1 cut(s)	2052
MslI	CAYNNNNRTG	1 cut(s)	1820
Msp20I	TGGCCA	1 cut(s)	2052
MspI	CCGG	2 cut(s)	142, 1667
MspR9I	CCNGG	3 cut(s)	1667, 2289, 2525
MunI	CAATTG	4 cut(s)	111, 524, 681, 2165
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	2 cut(s)	2289, 2525
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	5 cut(s)	342, 385, 500, 842, 1172
NciI	CCSGG	1 cut(s)	1667
NcoI	CCATGG	1 cut(s)	1778
NdeII	GATC	8 cut(s)	235, 953, 1132, 1472, 2192, 2240, 2486, 2530
NlaIV	GGNNCC	7 cut(s)	454, 576, 628, 1134, 1591, 1764, 1813
NmuCI	GTSAC	4 cut(s)	24, 1631, 1990, 2335
NsiI	ATGCAT	1 cut(s)	1521
NspI	RCATGY	5 cut(s)	374, 383, 830, 1312, 1519
PaeI	GCATGC	3 cut(s)	383, 1312, 1519
PciI	ACATGT	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	799
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PctI	GAATGC	1 cut(s)	288
PdmI	GAANNNNTTC	7 cut(s)	137, 451, 473, 1095, 1867, 1943, 1955
PfeI	GAWTC	5 cut(s)	542, 1058, 1424, 1570, 2309
PfoI	TCCNGGA	2 cut(s)	1665, 2523
PkrI	GCNGC	6 cut(s)	193, 708, 896, 899, 1174, 1711
PleI	GAGTC	2 cut(s)	1133, 1186
PpsI	GAGTC	2 cut(s)	1133, 1186
Ppu21I	YACGTR	1 cut(s)	1017
PpuMI	RGGWCCY	1 cut(s)	1811
PscI	ACATGT	1 cut(s)	370
Psp5II	RGGWCCY	1 cut(s)	1811
Psp6I	CCWGG	2 cut(s)	2287, 2523
PspFI	CCCAGC	1 cut(s)	1551
PspGI	CCWGG	2 cut(s)	2287, 2523
PspN4I	GGNNCC	7 cut(s)	454, 576, 628, 1134, 1591, 1764, 1813
PspPI	GGNCC	6 cut(s)	168, 627, 708, 1009, 1590, 1811
PspPPI	RGGWCCY	1 cut(s)	1811
PsrI	GAACNNNNNNTAC	2 cut(s)	2268, 2300
PstI	CTGCAG	1 cut(s)	847
PstNI	CAGNNNCTG	1 cut(s)	1187
PsuI	RGATCY	4 cut(s)	1132, 1472, 2240, 2486
RsaI	GTAC	4 cut(s)	1209, 1303, 1440, 2397
RsaNI	GTAC	4 cut(s)	1208, 1302, 1439, 2396
RseI	CAYNNNNRTG	1 cut(s)	1820
SalI	GTCGAC	1 cut(s)	2002
SapI	GCTCTTC	1 cut(s)	799
SatI	GCNGC	6 cut(s)	192, 707, 895, 898, 1173, 1710
Sau3AI	GATC	8 cut(s)	235, 953, 1132, 1472, 2192, 2240, 2486, 2530
Sau96I	GGNCC	6 cut(s)	168, 627, 708, 1009, 1590, 1811
SbfI	CCTGCAGG	1 cut(s)	847
ScaI	AGTACT	1 cut(s)	2397
SchI	GAGTC	2 cut(s)	1134, 1187
ScrFI	CCNGG	3 cut(s)	1667, 2289, 2525
SdaI	CCTGCAGG	1 cut(s)	847
SduI	GDGCHC	4 cut(s)	667, 992, 1469, 2161
SfaNI	GCATC	6 cut(s)	490, 727, 844, 1721, 1843, 2424
SfcI	CTRYAG	3 cut(s)	87, 843, 2325
SinI	GGWCC	3 cut(s)	168, 1009, 1811
SmiMI	CAYNNNNRTG	1 cut(s)	1820
SmlI	CTYRAG	4 cut(s)	95, 920, 1468, 1546
SmoI	CTYRAG	4 cut(s)	95, 920, 1468, 1546
SphI	GCATGC	3 cut(s)	383, 1312, 1519
Sse8387I	CCTGCAGG	1 cut(s)	847
SsiI	CCGC	6 cut(s)	44, 192, 388, 706, 894, 1043
SspI	AATATT	2 cut(s)	1249, 2203
SspMI	CTAG	6 cut(s)	428, 776, 1191, 1199, 1305, 2504
StyD4I	CCNGG	3 cut(s)	1665, 2287, 2523
StyI	CCWWGG	5 cut(s)	427, 1584, 1778, 1960, 2041
TaaI	ACNGT	5 cut(s)	24, 1275, 1372, 2371, 2424
TaiI	ACGT	3 cut(s)	1019, 1638, 1984
TaqI	TCGA	3 cut(s)	49, 2003, 2353
TaqII	GACCGA	2 cut(s)	138, 2009
TatI	WGTACW	2 cut(s)	1207, 2395
TauI	GCSGC	3 cut(s)	194, 709, 897
TfiI	GAWTC	5 cut(s)	542, 1058, 1424, 1570, 2309
TseFI	GTSAC	4 cut(s)	24, 1631, 1990, 2335
TseI	GCWGC	3 cut(s)	897, 1172, 1709
Tsp45I	GTSAC	4 cut(s)	24, 1631, 1990, 2335
TspGWI	ACGGA	3 cut(s)	1936, 2461, 2467
VneI	GTGCAC	1 cut(s)	2157
VpaK11BI	GGWCC	3 cut(s)	168, 1009, 1811
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	6 cut(s)	1324, 1942, 1955, 2069, 2479, 2549
XbaI	TCTAGA	1 cut(s)	775
XceI	RCATGY	5 cut(s)	374, 383, 830, 1312, 1519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2521
XmaJI	CCTAGG	1 cut(s)	427
XmiI	GTMKAC	2 cut(s)	1195, 2003
XmnI	GAANNNNTTC	7 cut(s)	137, 451, 473, 1095, 1867, 1943, 1955
XspI	CTAG	6 cut(s)	428, 776, 1191, 1199, 1305, 2504
ZrmI	AGTACT	1 cut(s)	2397
Zsp2I	ATGCAT	1 cut(s)	1521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.