Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Reverse (-)

33748792 .. 33754160

Gene Structure 5369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1277400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2553 bp

ATGGCTACCGATGGTTTCAGACGGCAACAGGTTTCATCAGCTCCGCCTCGAAAAATCAATGTCCAAAAGTTTGCAGAATCACGGGGTTCAGAGCTTGAGACACTCCATTCAATTGTATCTAACAGATTGAACAATGATTTCCGGTCTCGGAGAAGCAAGAGAAGAAGAACCACTGCTTACGACAATCAAGCCGCCAAAAAAAGATGTAGAAAGAAGCGAAAACTTGATCAGAGTAATGCTTTGACATTGCCTCCAGGGAAATATGACAAGAAGAATGTTCCTCGTCGCATTCGTCGGAGAGCTGAGCTTAAAATGAACCTTGAAAAGGGTTTCTGCACATCAGGGGATGGTACAAAGAGGCTTAGAACACATGTTTGGCATGCGAAGCGGTTCACAATGACAAAGCTTTGGGGTTACTACCTTCCCTTGGGTTTGCAGGGCAGAGGAAGGGGTTCCAGAGCTGTCTTGAAGTGGTTCAGGGATGGAGTGCTTGTTCATGATGCAAGCTATCATGTAGCTATCCAATTGGAGGGGCCGGAGGATTCGTTACTATCAGTGTTAGGCATGGTAATGGTGTCTCCTCCGTCAACTCGTTCTGAAACTGTTTCCCATTCTGTTATTTCTGGTGTCATATATGATAATGCTATGCTTCATCATTTGGGAGCACCTCTTTCAAAACCAATTGCTCCTGTGAACTGTATGTGGCGGCCTTCTGGCCAACCAAATAGAGATAATAATGCAGCTGACTGTGAAGGCGATGAATTTAATGGGCTAGAGGGTACAAAGCACTCTTCTACTGATCGCCAGCTTTGGGTGTGGATACATGCTTCTGCTCTCACTGAAGCTTATGACACTATGAAATTAGCTTGCCAAAAAGAGATGGAGGGCAGGGGCATCGTGATTAATTGTTCCTCACTTGAGGGTCAACTTGCAAAATTAGAATTAGTGGGATCAAAAGCATTTCAACTCCTTCAAAGGACATTAATCCCTGCTACCAGGACTAGAGATACTTCTTGGAAGTTGATGAGACATTCAGCTGCCGAGGCAGATGTGGATTCCCGATCTACAATTCATCTTAAAAACGAGGAGGAAATTCCTTCTCATGCAATTTTGTCCCTTAATGTCAAGGATCCTCGCACATTAACAGAGAAGGGAAACACTGCAGATGCTGAAGATTTAGGTTCAGCTAGTATACTAGGTGATGTACTAGGAACTGAAGACAACGAGCATATTATCTGTGGACAATTTTCAGACAAACCTGCAGGTAGTGGCAAGATCAGAGCAAACAATTTGTGGGATGTTAGCAGTGGAGTAAGCCCTCCAGTGGAAGAGGCTGTTCTTTGCAATGAAAGACATGACCAGAAGAGGAATTTCTTCTGCCTCGATGATTCAAGTTCAGGGGCACTAAATACTTCCTCCACGTCACAGGGCTCATGGTCTTGCCCGATTATGCTTTTGAAGAATAGTAACGGAAGAGGCTTGCATGTTGGATGGTCTGTTATACTCCCCTTAAGCTGGGTCAAGGCATTTTGGATTTCTCTTGTCTCTAAGGGGGCTCATGCATTGGGTTTGAGAGAGAAGCGCTGGATTTCAAGTGAAGTGGGGTTGCCATATTTTCCTTCAGATTTTCCTGATTGCAATGCATATTTATGCCTCAAGGAAACCGAAGCTGCTGCCTCTAATCTTAAAGATGAACTGCGTCCTCCAGCCATAAGACCTTTGAAGGTTCCCATTTTATCCCCATGGAATAGTATCCGAGTTGCTTTAAAAGAAGAATCTGTTGCAGTTGGAGATGCTGAAAGTTTTTGGCAACAACATGGTGTCAGAAGCGATTCATCATCTAATTCAGAGTGTGGAAACTCTGATGCTACATTAGCTGGCTGTCATGGAGATTCATTTGATGGTTTTGTAGCACGGACGAAATTTTCACTGACAAATTTCTTGAATGAAATTCAAGGCTGTCATTTGCGTATGTATCCTTATGTGGCTGATAAGGAGACAAGTTTTACGAAGTCTATGAGGGGTGAAATAAAGCTTGAACCGGGCCAAGATCAGCTTGCTAGATTTAAGTACAATCGTAAATTATGTTATGTTAGAGTATTGCTCCATGCTTACAAGGAAGGTTTTCTTGAAGAGGGAGCAGTAATTTGTGCGCCTCGACTGACGGACATCTCACTGTGGACCAGGTCAGATAGTTTCGATGGAGGACTTCAGATGCCTCAGTCTGCTGTGGCATCATACTTCGCAGAGCAATCTTATGGTAAGTGGGAAGTCCAAATACCAGAGGACGCTGTTCTTAGAGAAACTCATCGTTCGCCAATAGGCTTCGTCACCACTGGTTTTGTTAGAGGGAGCAAGAAGCCAGTAGCAGAAGCTTTTTGCGAGGCAGTTGTACTCGCTCGTCTCAGAGAGGAACAATGGGATTCGGTGCCAGCTAAGCAAAGACGAAAGGAAATATATGTTCTAGTCAGGAATTTGAGATCTTCAGCTTATAGACTTGCTCTTGCCACCATTGTTCTGGAGCATCAGGAAGAAGATGTCGAATTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

851

Amino Acids

94.99

Weight (kDa)

8.95

Isoelectric Point (pI)

52.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POP1_N	PF06978	121 - 178	1.5e-10	Ribonucleases P/MRP protein subunit POP1, N-terminal
POPLD	PF08170	497 - 573	1.1e-16	POPLD (NUC188) domain
POP1_C	PF22770	755 - 839	1.5e-06	POP1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1253, 1267
AccB1I	GGYRCC	1 cut(s)	2428
AccI	GTMKAC	1 cut(s)	1192
AciI	CCGC	4 cut(s)	44, 192, 388, 706
AclWI	GGATC	3 cut(s)	958, 1124, 1137
AcoI	YGGCCR	1 cut(s)	715
AcsI	RAATTY	8 cut(s)	761, 1092, 1369, 1922, 1936, 1950, 2473, 2543
AcuI	CTGAAG	6 cut(s)	861, 1191, 1236, 1605, 2195, 2469
AfaI	GTAC	5 cut(s)	352, 781, 1206, 2072, 2394
AfeI	AGCGCT	1 cut(s)	1583
AfiI	CCNNNNNNNGG	6 cut(s)	325, 427, 529, 811, 1324, 1515
AflII	CTTAAG	1 cut(s)	1510
AflIII	ACRYGT	1 cut(s)	370
AjiI	CACGTC	1 cut(s)	1422
AjnI	CCWGG	3 cut(s)	253, 995, 2183
AjuI	GAANNNNNNNTTGG	2 cut(s)	358, 390
AloI	GAACNNNNNNTCC	2 cut(s)	477, 509
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	7 cut(s)	92, 150, 582, 1021, 1549, 1991, 2408
AlwI	GGATC	3 cut(s)	958, 1124, 1137
AlwNI	CAGNNNCTG	1 cut(s)	1169
Aor51HI	AGCGCT	1 cut(s)	1583
AoxI	GGCC	4 cut(s)	533, 707, 715, 2044
ApeKI	GCWGC	4 cut(s)	740, 1037, 1670, 1673
ApoI	RAATTY	8 cut(s)	761, 1092, 1369, 1922, 1936, 1950, 2473, 2543
AseI	ATTAAT	2 cut(s)	903, 983
Asp700I	GAANNNNTTC	6 cut(s)	389, 451, 473, 1373, 1831, 2124
AspLEI	GCGC	2 cut(s)	1584, 2155
AspS9I	GGNCC	3 cut(s)	533, 2044, 2181
AsuC2I	CCSGG	1 cut(s)	2043
AsuHPI	GGTGA	3 cut(s)	1211, 2036, 2323
AvaII	GGWCC	1 cut(s)	2181
BaeGI	GKGCMC	1 cut(s)	1405
BalI	TGGCCA	1 cut(s)	717
BamHI	GGATCC	1 cut(s)	1129
BanI	GGYRCC	1 cut(s)	2428
BanII	GRGCYC	2 cut(s)	1433, 1558
BarI	GAAGNNNNNNTAC	2 cut(s)	2262, 2294
BbsI	GAAGAC	1 cut(s)	1224
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	4 cut(s)	752, 1024, 1657, 1660
BccI	CCATC	7 cut(s)	5, 341, 476, 874, 1485, 1895, 2195
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	4 cut(s)	877, 911, 1655, 1689
BciT130I	CCWGG	3 cut(s)	255, 997, 2185
BciVI	GTATCC	3 cut(s)	813, 1763, 1986
BclI	TGATCA	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	2043
BcoDI	GTCTC	7 cut(s)	92, 150, 582, 1021, 1549, 1991, 2408
BfaI	CTAG	7 cut(s)	773, 1002, 1188, 1196, 1208, 2061, 2465
BfmI	CTRYAG	2 cut(s)	1161, 1260
BfoI	RGCGCY	1 cut(s)	1585
BfrI	CTTAAG	1 cut(s)	1510
BfuAI	ACCTGC	2 cut(s)	1253, 1267
BfuI	GTATCC	3 cut(s)	813, 1763, 1986
BglII	AGATCT	1 cut(s)	2480
BisI	GCNGC	6 cut(s)	192, 707, 741, 1038, 1671, 1674
BlpI	GCTNAGC	2 cut(s)	303, 2436
BlsI	GCNGC	6 cut(s)	193, 708, 742, 1039, 1672, 1675
Bme1390I	CCNGG	4 cut(s)	255, 997, 2043, 2185
Bme18I	GGWCC	1 cut(s)	2181
BmgBI	CACGTC	1 cut(s)	1422
BmgT120I	GGNCC	3 cut(s)	533, 2044, 2181
BmiI	GGNNCC	5 cut(s)	454, 534, 1131, 1728, 2430
BmrFI	CCNGG	4 cut(s)	255, 997, 2043, 2185
BmsI	GCATC	8 cut(s)	490, 903, 1156, 1783, 1855, 2205, 2243, 2533
BpiI	GAAGAC	1 cut(s)	1224
BplI	GAGNNNNNCTC	2 cut(s)	2088, 2120
BpmI	CTGGAG	4 cut(s)	237, 1305, 1689, 2540
Bpu1102I	GCTNAGC	2 cut(s)	303, 2436
BpuEI	CTTGAG	3 cut(s)	116, 938, 1640
BpuMI	CCSGG	1 cut(s)	2043
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	4 cut(s)	254, 426, 1041, 1742
BsaWI	WCCGGW	1 cut(s)	141
BsaXI	ACNNNNNCTCC	6 cut(s)	235, 265, 477, 507, 530, 560
Bsc4I	CCNNNNNNNGG	6 cut(s)	325, 427, 529, 811, 1324, 1515
Bse1I	ACTGG	3 cut(s)	1322, 2341, 2363
Bse3DI	GCAATG	3 cut(s)	245, 1351, 1645
BseBI	CCWGG	3 cut(s)	255, 997, 2185
BseDI	CCNNGG	4 cut(s)	254, 426, 1041, 1742
BseGI	GGATG	4 cut(s)	352, 487, 1303, 1496
BseLI	CCNNNNNNNGG	6 cut(s)	325, 427, 529, 811, 1324, 1515
BseMI	GCAATG	3 cut(s)	245, 1351, 1645
BseMII	CTCAG	3 cut(s)	294, 2234, 2419
BseNI	ACTGG	3 cut(s)	1322, 2341, 2363
BseRI	GAGGAG	2 cut(s)	570, 1100
BseSI	GKGCMC	1 cut(s)	1405
BseXI	GCAGC	4 cut(s)	752, 1024, 1657, 1660
BseYI	CCCAGC	1 cut(s)	1515
BsgI	GTGCAG	1 cut(s)	319
BshFI	GGCC	4 cut(s)	535, 709, 717, 2046
BshNI	GGYRCC	1 cut(s)	2428
BsiHKAI	GWGCWC	1 cut(s)	667
BsiSI	CCGG	3 cut(s)	142, 536, 2042
BslFI	GGGAC	1 cut(s)	1099
BslI	CCNNNNNNNGG	6 cut(s)	325, 427, 529, 811, 1324, 1515
BsmAI	GTCTC	7 cut(s)	92, 150, 582, 1021, 1549, 1991, 2408
BsmBI	CGTCTC	1 cut(s)	2408
BsmFI	GGGAC	1 cut(s)	1099
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	4 cut(s)	535, 709, 717, 2046
Bso31I	GGTCTC	1 cut(s)	150
Bsp1286I	GDGCHC	4 cut(s)	667, 1405, 1433, 1558
Bsp143I	GATC	8 cut(s)	226, 799, 950, 1061, 1129, 1275, 2050, 2480
Bsp1720I	GCTNAGC	2 cut(s)	303, 2436
Bsp19I	CCATGG	1 cut(s)	1742
BspACI	CCGC	4 cut(s)	44, 192, 388, 706
BspANI	GGCC	4 cut(s)	535, 709, 717, 2046
BspCNI	CTCAG	3 cut(s)	295, 2233, 2418
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	5 cut(s)	454, 534, 1131, 1728, 2430
BspMAI	CTGCAG	2 cut(s)	1165, 1264
BspMI	ACCTGC	2 cut(s)	1253, 1267
BspPI	GGATC	3 cut(s)	958, 1124, 1137
BspT107I	GGYRCC	1 cut(s)	2428
BspTI	CTTAAG	1 cut(s)	1510
BspTNI	GGTCTC	1 cut(s)	150
BsrDI	GCAATG	3 cut(s)	245, 1351, 1645
BsrI	ACTGG	3 cut(s)	1322, 2341, 2363
BssECI	CCNNGG	4 cut(s)	254, 426, 1041, 1742
BssMI	GATC	8 cut(s)	226, 799, 950, 1061, 1129, 1275, 2050, 2480
BssNAI	GTATAC	1 cut(s)	1193
BssT1I	CCWWGG	2 cut(s)	426, 1742
Bst1107I	GTATAC	1 cut(s)	1193
Bst2UI	CCWGG	3 cut(s)	255, 997, 2185
Bst4CI	ACNGT	4 cut(s)	604, 698, 749, 2178
Bst6I	CTCTTC	5 cut(s)	796, 1323, 1358, 1468, 2127
BstAFI	CTTAAG	1 cut(s)	1510
BstC8I	GCNNGC	8 cut(s)	381, 505, 806, 868, 1481, 1879, 2058, 2433
BstDEI	CTNAG	7 cut(s)	303, 362, 1548, 2220, 2297, 2405, 2436
BstDSI	CCRYGG	1 cut(s)	1742
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	4 cut(s)	352, 487, 1303, 1496
BstH2I	RGCGCY	1 cut(s)	1585
BstHHI	GCGC	2 cut(s)	1584, 2155
BstKTI	GATC	8 cut(s)	229, 802, 953, 1064, 1132, 1278, 2053, 2483
BstMAI	GTCTC	7 cut(s)	92, 150, 582, 1021, 1549, 1991, 2408
BstMBI	GATC	8 cut(s)	226, 799, 950, 1061, 1129, 1275, 2050, 2480
BstMWI	GCNNNNNNNGC	4 cut(s)	385, 1043, 1874, 2437
BstNI	CCWGG	3 cut(s)	255, 997, 2185
BstNSI	RCATGY	4 cut(s)	374, 383, 827, 1487
BstSCI	CCNGG	4 cut(s)	253, 995, 2041, 2183
BstSFI	CTRYAG	2 cut(s)	1161, 1260
BstSLI	GKGCMC	1 cut(s)	1405
BstV1I	GCAGC	4 cut(s)	752, 1024, 1657, 1660
BstV2I	GAAGAC	1 cut(s)	1224
BstX2I	RGATCY	2 cut(s)	1129, 2480
BstXI	CCANNNNNNTGG	1 cut(s)	2518
BstYI	RGATCY	2 cut(s)	1129, 2480
BstZ17I	GTATAC	1 cut(s)	1193
BsuI	GTATCC	3 cut(s)	813, 1763, 1986
BsuRI	GGCC	4 cut(s)	535, 709, 717, 2046
BtgI	CCRYGG	1 cut(s)	1742
BtgZI	GCGATG	1 cut(s)	771
BtrI	CACGTC	1 cut(s)	1422
BtsCI	GGATG	4 cut(s)	352, 487, 1303, 1496
BtsI	GCAGTG	3 cut(s)	171, 1158, 1312
BtsIMutI	CAGTG	9 cut(s)	171, 561, 837, 1158, 1312, 1329, 1928, 2174, 2334
BveI	ACCTGC	2 cut(s)	1253, 1267
Cac8I	GCNNGC	8 cut(s)	381, 505, 806, 868, 1481, 1879, 2058, 2433
CaiI	CAGNNNCTG	1 cut(s)	1169
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	2 cut(s)	1584, 2155
Cfr13I	GGNCC	3 cut(s)	533, 2044, 2181
CseI	GACGC	2 cut(s)	1688, 2297
CsiI	ACCWGGT	1 cut(s)	2183
Csp6I	GTAC	5 cut(s)	351, 780, 1205, 2071, 2393
CspCI	CAANNNNNGTGG	4 cut(s)	1581, 1616, 2323, 2358
CviQI	GTAC	5 cut(s)	351, 780, 1205, 2071, 2393
DdeI	CTNAG	7 cut(s)	303, 362, 1548, 2220, 2297, 2405, 2436
DpnI	GATC	8 cut(s)	228, 801, 952, 1063, 1131, 1277, 2052, 2482
DpnII	GATC	8 cut(s)	226, 799, 950, 1061, 1129, 1275, 2050, 2480
DraI	TTTAAA	1 cut(s)	1767
EaeI	YGGCCR	1 cut(s)	715
Eam1104I	CTCTTC	5 cut(s)	796, 1323, 1358, 1468, 2127
EarI	CTCTTC	5 cut(s)	796, 1323, 1358, 1468, 2127
EciI	GGCGGA	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	426, 1742
Eco24I	GRGCYC	2 cut(s)	1433, 1558
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	2181
Eco47III	AGCGCT	1 cut(s)	1583
Eco57I	CTGAAG	6 cut(s)	861, 1191, 1236, 1605, 2195, 2469
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	2543
EcoRII	CCWGG	3 cut(s)	253, 995, 2183
EcoT14I	CCWWGG	2 cut(s)	426, 1742
EcoT22I	ATGCAT	2 cut(s)	1564, 1645
EcoT38I	GRGCYC	2 cut(s)	1433, 1558
ErhI	CCWWGG	2 cut(s)	426, 1742
Esp3I	CGTCTC	1 cut(s)	2408
FalI	AAGNNNNNCTT	4 cut(s)	2040, 2072, 2112, 2144
FaqI	GGGAC	1 cut(s)	1099
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	1192
Fnu4HI	GCNGC	6 cut(s)	192, 707, 741, 1038, 1671, 1674
FokI	GGATG	4 cut(s)	359, 494, 1310, 1503
FriOI	GRGCYC	2 cut(s)	1433, 1558
Fsp4HI	GCNGC	6 cut(s)	192, 707, 741, 1038, 1671, 1674
FspBI	CTAG	7 cut(s)	773, 1002, 1188, 1196, 1208, 2061, 2465
GlaI	GCGC	2 cut(s)	1583, 2154
GluI	GCNGC	6 cut(s)	192, 707, 741, 1038, 1671, 1674
GsaI	CCCAGC	1 cut(s)	1519
GsuI	CTGGAG	4 cut(s)	237, 1305, 1689, 2540
HaeII	RGCGCY	1 cut(s)	1585
HaeIII	GGCC	4 cut(s)	535, 709, 717, 2046
HapII	CCGG	3 cut(s)	142, 536, 2042
HgaI	GACGC	2 cut(s)	1688, 2297
HhaI	GCGC	2 cut(s)	1584, 2155
Hin6I	GCGC	2 cut(s)	1582, 2153
HinP1I	GCGC	2 cut(s)	1582, 2153
HincII	GTYRAC	2 cut(s)	588, 926
HindII	GTYRAC	2 cut(s)	588, 926
HindIII	AAGCTT	4 cut(s)	404, 843, 2033, 2373
HinfI	GANTC	8 cut(s)	77, 542, 1055, 1388, 1775, 1832, 1892, 2423
HpaII	CCGG	3 cut(s)	142, 536, 2042
HphI	GGTGA	3 cut(s)	1211, 2036, 2323
Hpy166II	GTNNAC	7 cut(s)	393, 588, 694, 926, 1193, 1241, 2181
Hpy8I	GTNNAC	7 cut(s)	393, 588, 694, 926, 1193, 1241, 2181
Hpy99I	CGWCG	2 cut(s)	288, 297
HpyCH4III	ACNGT	4 cut(s)	604, 698, 749, 2178
HpyCH4IV	ACGT	1 cut(s)	1421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	385, 1043, 1874, 2437
HpyF3I	CTNAG	7 cut(s)	303, 362, 1548, 2220, 2297, 2405, 2436
HpySE526I	ACGT	1 cut(s)	1421
HspAI	GCGC	2 cut(s)	1582, 2153
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	8 cut(s)	226, 799, 950, 1061, 1129, 1275, 2050, 2480
LmnI	GCTCC	7 cut(s)	46, 662, 691, 2109, 2138, 2352, 2521
Lsp1109I	GCAGC	4 cut(s)	752, 1024, 1657, 1660
LweI	GCATC	8 cut(s)	490, 903, 1156, 1783, 1855, 2205, 2243, 2533
MabI	ACCWGGT	1 cut(s)	2183
MaeI	CTAG	7 cut(s)	773, 1002, 1188, 1196, 1208, 2061, 2465
MaeII	ACGT	1 cut(s)	1421
MaeIII	GTNAC	5 cut(s)	413, 546, 1422, 1466, 2329
MalI	GATC	8 cut(s)	228, 801, 952, 1063, 1131, 1277, 2052, 2482
MboI	GATC	8 cut(s)	226, 799, 950, 1061, 1129, 1275, 2050, 2480
MfeI	CAATTG	3 cut(s)	111, 524, 681
MflI	RGATCY	2 cut(s)	1129, 2480
MhlI	GDGCHC	4 cut(s)	667, 1405, 1433, 1558
MlsI	TGGCCA	1 cut(s)	717
MluNI	TGGCCA	1 cut(s)	717
MmeI	TCCRAC	3 cut(s)	275, 1468, 1768
Mox20I	TGGCCA	1 cut(s)	717
Mph1103I	ATGCAT	2 cut(s)	1564, 1645
MroXI	GAANNNNTTC	6 cut(s)	389, 451, 473, 1373, 1831, 2124
MscI	TGGCCA	1 cut(s)	717
MslI	CAYNNNNRTG	2 cut(s)	569, 1648
Msp20I	TGGCCA	1 cut(s)	717
MspA1I	CMGCKG	2 cut(s)	743, 1037
MspCI	CTTAAG	1 cut(s)	1510
MspI	CCGG	3 cut(s)	142, 536, 2042
MspR9I	CCNGG	4 cut(s)	255, 997, 2043, 2185
MunI	CAATTG	3 cut(s)	111, 524, 681
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	3 cut(s)	255, 997, 2185
MwoI	GCNNNNNNNGC	4 cut(s)	385, 1043, 1874, 2437
NciI	CCSGG	1 cut(s)	2043
NcoI	CCATGG	1 cut(s)	1742
NdeII	GATC	8 cut(s)	226, 799, 950, 1061, 1129, 1275, 2050, 2480
NlaIV	GGNNCC	5 cut(s)	454, 534, 1131, 1728, 2430
NmeAIII	GCCGAG	1 cut(s)	1066
NmuCI	GTSAC	2 cut(s)	1422, 2329
NsiI	ATGCAT	2 cut(s)	1564, 1645
NspI	RCATGY	4 cut(s)	374, 383, 827, 1487
PaeI	GCATGC	1 cut(s)	383
PagI	TCATGA	1 cut(s)	496
PciI	ACATGT	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PctI	GAATGC	1 cut(s)	288
PdmI	GAANNNNTTC	6 cut(s)	389, 451, 473, 1373, 1831, 2124
PfeI	GAWTC	8 cut(s)	77, 542, 1055, 1388, 1775, 1832, 1892, 2423
PflFI	GACNNNGTC	1 cut(s)	2185
PkrI	GCNGC	6 cut(s)	193, 708, 742, 1039, 1672, 1675
PscI	ACATGT	1 cut(s)	370
PshBI	ATTAAT	2 cut(s)	903, 983
Psp6I	CCWGG	3 cut(s)	253, 995, 2183
PspFI	CCCAGC	1 cut(s)	1515
PspGI	CCWGG	3 cut(s)	253, 995, 2183
PspN4I	GGNNCC	5 cut(s)	454, 534, 1131, 1728, 2430
PspPI	GGNCC	3 cut(s)	533, 2044, 2181
PstI	CTGCAG	2 cut(s)	1165, 1264
PstNI	CAGNNNCTG	1 cut(s)	1169
PsuI	RGATCY	2 cut(s)	1129, 2480
PsyI	GACNNNGTC	1 cut(s)	2185
PvuII	CAGCTG	2 cut(s)	743, 1037
RsaI	GTAC	5 cut(s)	352, 781, 1206, 2072, 2394
RsaNI	GTAC	5 cut(s)	351, 780, 1205, 2071, 2393
RseI	CAYNNNNRTG	2 cut(s)	569, 1648
SatI	GCNGC	6 cut(s)	192, 707, 741, 1038, 1671, 1674
Sau3AI	GATC	8 cut(s)	226, 799, 950, 1061, 1129, 1275, 2050, 2480
Sau96I	GGNCC	3 cut(s)	533, 2044, 2181
SbfI	CCTGCAGG	1 cut(s)	1264
ScrFI	CCNGG	4 cut(s)	255, 997, 2043, 2185
SdaI	CCTGCAGG	1 cut(s)	1264
SduI	GDGCHC	4 cut(s)	667, 1405, 1433, 1558
SexAI	ACCWGGT	1 cut(s)	2183
SfaNI	GCATC	8 cut(s)	490, 903, 1156, 1783, 1855, 2205, 2243, 2533
SfcI	CTRYAG	2 cut(s)	1161, 1260
SinI	GGWCC	1 cut(s)	2181
SmiMI	CAYNNNNRTG	2 cut(s)	569, 1648
SmlI	CTYRAG	4 cut(s)	95, 917, 1510, 1655
SmoI	CTYRAG	4 cut(s)	95, 917, 1510, 1655
SphI	GCATGC	1 cut(s)	383
Sse8387I	CCTGCAGG	1 cut(s)	1264
SsiI	CCGC	4 cut(s)	44, 192, 388, 706
SspMI	CTAG	7 cut(s)	773, 1002, 1188, 1196, 1208, 2061, 2465
StyD4I	CCNGG	4 cut(s)	253, 995, 2041, 2183
StyI	CCWWGG	2 cut(s)	426, 1742
TaaI	ACNGT	4 cut(s)	604, 698, 749, 2178
TaiI	ACGT	1 cut(s)	1424
TaqI	TCGA	5 cut(s)	49, 1383, 2158, 2199, 2541
TatI	WGTACW	3 cut(s)	1204, 2070, 2392
TauI	GCSGC	2 cut(s)	194, 709
TfiI	GAWTC	8 cut(s)	77, 542, 1055, 1388, 1775, 1832, 1892, 2423
TscAI	CASTG	9 cut(s)	178, 561, 844, 1165, 1312, 1329, 1935, 2181, 2341
TseFI	GTSAC	2 cut(s)	1422, 2329
TseI	GCWGC	4 cut(s)	740, 1037, 1670, 1673
Tsp45I	GTSAC	2 cut(s)	1422, 2329
TspGWI	ACGGA	4 cut(s)	573, 1485, 1930, 2180
TspRI	CASTG	9 cut(s)	178, 561, 844, 1165, 1312, 1329, 1935, 2181, 2341
Tth111I	GACNNNGTC	1 cut(s)	2185
Vha464I	CTTAAG	1 cut(s)	1510
VpaK11BI	GGWCC	1 cut(s)	2181
VspI	ATTAAT	2 cut(s)	903, 983
XagI	CCTNNNNNAGG	1 cut(s)	323
XapI	RAATTY	8 cut(s)	761, 1092, 1369, 1922, 1936, 1950, 2473, 2543
XceI	RCATGY	4 cut(s)	374, 383, 827, 1487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2515
XmiI	GTMKAC	1 cut(s)	1192
XmnI	GAANNNNTTC	6 cut(s)	389, 451, 473, 1373, 1831, 2124
XspI	CTAG	7 cut(s)	773, 1002, 1188, 1196, 1208, 2061, 2465
Zsp2I	ATGCAT	2 cut(s)	1564, 1645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.