Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002117

Physical Location & Seq

Genomic Coordinates Reverse (-)

47300925 .. 47302385

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G032520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAAGAGAGCGGCAGCATGATTAATTTTTTCTCACTTGAGGGCCAACTCGCGAAATTAGAAGTTATGGGATCAAAAGCATTTCAACTCCTCCAAAGGACATTGTGCCCTGTTACAAGAAGAAAGGATCATACTTGGGCATTGGAGAGACATTCAGCTGCTGAAGCTCCAGATGATTCCCAATCTAAGACTATACTTGAAAATGAGGAAGACATTCCTTCTCATGCAGTGTTGTCTCTTAGAGTCAAGGATCCTCGCATGTTCATAGAGAAACGAAAGACTGCATGTGCTTCAGACTTAGGTTCTGCTAGTATACTAGCTGATGAACAAGGAACTGAAGACAAAGAGCATGCTGTCAGTGGAATTATTTCAGACAAGAAGAAAGAGTTACTTTCCTCGATGGGTTCAGAACTCGAAGGTACTAGCATGCTCGCAGAAAAGAATTTGTGGGATGTTAACAGTGGTATAAGTCCTCCAGTGGAAGAGATGGTTCTTTGCCAGGAAAGATATGACCAGAATAAAAAATTCTTCTGCCTTGATGAATCAAGTTCAAGGGTACTAAATACTTCAACCAATTTGCAGTGCAGTTCTTGTCCTGTTCTGCTTTTGAAAAATGACAACGGAAGGGGCTTGCATATTGGTTGGTCTGTAATTCTACCCTTGAGCTGGGTCAGGGCATTTTGGATTCCTCTCGTCTCCAAGGGGGCTCATGTGATAGGTAGAGAGAGGCACTGGATTTCATGTGACGTAGGATTGCCATGTTTTCCTTCGGATTTCCCTGTTGCAGTGCATATTTATGCCTTAAGGAAACTGAAAGTGCCGCCTCCAATGTTATTTTGCCCATTTTGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000171 GO:0000172 GO:0000966 GO:0001682 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004526 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005655 GO:0005730 GO:0005732 GO:0006139 GO:0006396 GO:0006399 GO:0006401 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016078 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019439 GO:0030677 GO:0030681 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0046700 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0099116 GO:0140098 GO:0140101 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03013 map03008 map03013

Pfam Domains

Protein Families

POP1 POPLD

Protein Analysis

284

Amino Acids

31.7

Weight (kDa)

5.94

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
POPLD	PF08170	214 - 262	1.3e-08	POPLD (NUC188) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002117)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47300 AT2G47300 AT2G47300
fragaria_vesca	FvH4_1g27070
malus_domestica	MD17G1273000.v1.1 MD17G1275500.v1.1 MD17G1275600.v1.1 MD17G1275700.v1.1 MD17G1277400.v1.1
prunus_persica	Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1 Prupe.3G010600_v2.0.a1
pyrus_communis	pycom09g19200 pycom17g27430 pycom17g27440 pycom17g27500
rosa_chinensis	RchiOBHm_Chr3g0487391 RchiOBHm_Chr3g0487761
rosa_laevigata	RLG00000023008
rosa_multiflora	Rmu_co8087646.1_g000001 Rmu_sc0001955.1_g000003 Rmu_sc0003620.1_g000002 Rmu_sc0008132.1_g000008 Rmu_sc0009101.1_g000013 Rmu_sc0021127.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333670 Rroxscaffold_6G00394510 Rroxscaffold_6G00394520 Rroxscaffold_6G00394820 Rroxscaffold_6G00394830
rosa_rugosa	Rorug03G0233600
rosa_samantha	Rh3AG281700 Rh3BG317300 Rh3BG321000 Rh3CG315400 Rh3DG313300 Rh3DG318100 Rh5DG285200
rosa_wichuraiana	Rw1G008590 Rw2G029580 Rw3G024940 Rw5G013600 Rw5G015220 Rw7G032520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	313
AccII	CGCG	1 cut(s)	53
AciI	CCGC	2 cut(s)	12, 821
AclWI	GGATC	4 cut(s)	79, 135, 245, 258
AcsI	RAATTY	2 cut(s)	442, 524
AcuI	CTGAAG	3 cut(s)	183, 276, 357
AfaI	GTAC	2 cut(s)	421, 558
AfiI	CCNNNNNNNGG	1 cut(s)	666
AflII	CTTAAG	1 cut(s)	802
AgsI	TTSAA	5 cut(s)	86, 200, 552, 570, 610
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	4 cut(s)	158, 167, 320, 666
AluI	AGCT	4 cut(s)	158, 167, 320, 666
Alw26I	GTCTC	3 cut(s)	142, 240, 700
AlwI	GGATC	4 cut(s)	79, 135, 245, 258
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	15, 158
ApoI	RAATTY	2 cut(s)	442, 524
AseI	ATTAAT	1 cut(s)	24
Asp700I	GAANNNNTTC	2 cut(s)	213, 367
AspS9I	GGNCC	1 cut(s)	43
BaeGI	GKGCMC	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	709
BbsI	GAAGAC	2 cut(s)	216, 345
BbvI	GCAGC	2 cut(s)	27, 145
BccI	CCATC	2 cut(s)	394, 481
BciT130I	CCWGG	1 cut(s)	500
BcoDI	GTCTC	3 cut(s)	142, 240, 700
BfaI	CTAG	3 cut(s)	309, 317, 423
BfrI	CTTAAG	1 cut(s)	802
BisI	GCNGC	4 cut(s)	13, 16, 159, 821
BlsI	GCNGC	4 cut(s)	14, 17, 160, 822
Bme1390I	CCNGG	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	500
BpiI	GAAGAC	2 cut(s)	216, 345
BpmI	CTGGAG	2 cut(s)	153, 459
BpuEI	CTTGAG	2 cut(s)	59, 682
BsaJI	CCNNGG	1 cut(s)	699
Bsc4I	CCNNNNNNNGG	1 cut(s)	666
Bse1I	ACTGG	2 cut(s)	476, 737
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	666
BseNI	ACTGG	2 cut(s)	476, 737
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	27, 145
BseYI	CCCAGC	1 cut(s)	666
BsgI	GTGCAG	1 cut(s)	604
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	666
BsmAI	GTCTC	3 cut(s)	142, 240, 700
BsmBI	CGTCTC	1 cut(s)	700
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	110, 709
Bsp143I	GATC	3 cut(s)	71, 127, 250
Bsp68I	TCGCGA	1 cut(s)	53
BspACI	CCGC	2 cut(s)	12, 821
BspANI	GGCC	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	4 cut(s)	79, 135, 245, 258
BspTI	CTTAAG	1 cut(s)	802
BsrBI	CCGCTC	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	476, 737
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	3 cut(s)	71, 127, 250
BssNAI	GTATAC	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	699
Bst1107I	GTATAC	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	477
BstAFI	CTTAAG	1 cut(s)	802
BstC8I	GCNNGC	4 cut(s)	351, 428, 432, 632
BstDEI	CTNAG	3 cut(s)	186, 239, 298
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	3 cut(s)	74, 130, 253
BstMAI	GTCTC	3 cut(s)	142, 240, 700
BstMBI	GATC	3 cut(s)	71, 127, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	500
BstNSI	RCATGY	4 cut(s)	262, 288, 353, 430
BstSCI	CCNGG	1 cut(s)	498
BstSLI	GKGCMC	1 cut(s)	110
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	27, 145
BstV2I	GAAGAC	2 cut(s)	216, 345
BstX2I	RGATCY	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	250
BstZ17I	GTATAC	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	3 cut(s)	234, 587, 792
BtsIMutI	CAGTG	7 cut(s)	234, 364, 466, 483, 587, 730, 792
BtuMI	TCGCGA	1 cut(s)	53
Cac8I	GCNNGC	4 cut(s)	351, 428, 432, 632
CaiI	CAGNNNCTG	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	43
Csp6I	GTAC	2 cut(s)	420, 557
CviAII	CATG	9 cut(s)	19, 224, 259, 285, 350, 427, 710, 741, 759
CviJI	RGCY	7 cut(s)	45, 158, 167, 320, 630, 666, 707
CviKI_1	RGCY	7 cut(s)	45, 158, 167, 320, 630, 666, 707
CviQI	GTAC	2 cut(s)	420, 557
DdeI	CTNAG	3 cut(s)	186, 239, 298
DpnI	GATC	3 cut(s)	73, 129, 252
DpnII	GATC	3 cut(s)	71, 127, 250
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	699
Eco24I	GRGCYC	1 cut(s)	709
Eco57I	CTGAAG	3 cut(s)	183, 276, 357
EcoRII	CCWGG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	699
EcoT38I	GRGCYC	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	699
Esp3I	CGTCTC	1 cut(s)	700
FaeI	CATG	9 cut(s)	22, 227, 262, 288, 353, 430, 713, 744, 762
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	9 cut(s)	18, 223, 258, 284, 349, 426, 709, 740, 758
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	13, 16, 159, 821
FokI	GGATG	1 cut(s)	464
FriOI	GRGCYC	1 cut(s)	709
Fsp4HI	GCNGC	4 cut(s)	13, 16, 159, 821
FspBI	CTAG	3 cut(s)	309, 317, 423
GluI	GCNGC	4 cut(s)	13, 16, 159, 821
GsaI	CCCAGC	1 cut(s)	670
GsuI	CTGGAG	2 cut(s)	153, 459
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	9 cut(s)	22, 227, 262, 288, 353, 430, 713, 744, 762
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	4 cut(s)	176, 243, 542, 685
HpaI	GTTAAC	1 cut(s)	457
Hpy166II	GTNNAC	2 cut(s)	314, 457
Hpy188I	TCNGA	4 cut(s)	295, 373, 409, 772
Hpy188III	TCNNGA	2 cut(s)	52, 170
Hpy8I	GTNNAC	2 cut(s)	314, 457
HpyAV	CCTTC	4 cut(s)	228, 410, 618, 777
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	7 cut(s)	227, 284, 580, 585, 634, 785, 790
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	3 cut(s)	186, 239, 298
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	9 cut(s)	22, 227, 262, 288, 353, 430, 713, 744, 762
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	71, 127, 250
LmnI	GCTCC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	27, 145
MaeI	CTAG	3 cut(s)	309, 317, 423
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	3 cut(s)	112, 387, 743
MalI	GATC	3 cut(s)	73, 129, 252
MbiI	CCGCTC	1 cut(s)	12
MboI	GATC	3 cut(s)	71, 127, 250
MboII	GAAGA	7 cut(s)	17, 132, 221, 350, 391, 494, 520
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	110, 709
MluCI	AATT	7 cut(s)	25, 56, 363, 442, 524, 574, 651
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	9 cut(s)	34, 101, 199, 264, 406, 483, 699, 720, 834
MroXI	GAANNNNTTC	2 cut(s)	213, 367
MseI	TTAA	3 cut(s)	24, 456, 803
MslI	CAYNNNNRTG	1 cut(s)	795
MspA1I	CMGCKG	1 cut(s)	158
MspCI	CTTAAG	1 cut(s)	802
MspR9I	CCNGG	1 cut(s)	500
MvaI	CCWGG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	3 cut(s)	71, 127, 250
NlaIII	CATG	9 cut(s)	22, 227, 262, 288, 353, 430, 713, 744, 762
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	1 cut(s)	743
NruI	TCGCGA	1 cut(s)	53
NspI	RCATGY	4 cut(s)	262, 288, 353, 430
PaeI	GCATGC	2 cut(s)	353, 430
PdmI	GAANNNNTTC	2 cut(s)	213, 367
PfeI	GAWTC	3 cut(s)	176, 542, 685
PkrI	GCNGC	4 cut(s)	14, 17, 160, 822
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PshBI	ATTAAT	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	498
PspFI	CCCAGC	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	158
RruI	TCGCGA	1 cut(s)	53
RsaI	GTAC	2 cut(s)	421, 558
RsaNI	GTAC	2 cut(s)	420, 557
RseI	CAYNNNNRTG	1 cut(s)	795
SaqAI	TTAA	3 cut(s)	24, 456, 803
SatI	GCNGC	4 cut(s)	13, 16, 159, 821
Sau3AI	GATC	3 cut(s)	71, 127, 250
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	2 cut(s)	110, 709
SetI	ASST	8 cut(s)	160, 169, 304, 322, 421, 668, 721, 750
SmiMI	CAYNNNNRTG	1 cut(s)	795
SmlI	CTYRAG	3 cut(s)	38, 661, 802
SmoI	CTYRAG	3 cut(s)	38, 661, 802
SphI	GCATGC	2 cut(s)	353, 430
Sse9I	AATT	7 cut(s)	25, 56, 363, 442, 524, 574, 651
SsiI	CCGC	2 cut(s)	12, 821
SspMI	CTAG	3 cut(s)	309, 317, 423
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	2 cut(s)	398, 414
TasI	AATT	7 cut(s)	25, 56, 363, 442, 524, 574, 651
TauI	GCSGC	2 cut(s)	15, 823
TfiI	GAWTC	3 cut(s)	176, 542, 685
Tru1I	TTAA	3 cut(s)	24, 456, 803
Tru9I	TTAA	3 cut(s)	24, 456, 803
TscAI	CASTG	7 cut(s)	234, 364, 466, 483, 587, 737, 792
TseFI	GTSAC	1 cut(s)	743
TseI	GCWGC	2 cut(s)	15, 158
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	4 cut(s)	253, 339, 555, 729
TspGWI	ACGGA	1 cut(s)	636
TspRI	CASTG	7 cut(s)	234, 364, 466, 483, 587, 737, 792
Vha464I	CTTAAG	1 cut(s)	802
VspI	ATTAAT	1 cut(s)	24
XapI	RAATTY	2 cut(s)	442, 524
XceI	RCATGY	4 cut(s)	262, 288, 353, 430
XmiI	GTMKAC	1 cut(s)	313
XmnI	GAANNNNTTC	2 cut(s)	213, 367
XspI	CTAG	3 cut(s)	309, 317, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.