Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016197

Physical Location & Seq

Genomic Coordinates Reverse (-)

23300290 .. 23301865

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G63060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCTTCTAGAGGGAAGATTCTCCGTCGTCCAGATGAACACGAATAGACGGCTCAAATTTAACCAACCGAGTCGATTACCCAACTCGGGTAAGTCAGGTATAGAGAATGAGCGAGTCCTGGTTCTTGTCTTCGAGTCCATTAGCTGGGACATCCACACGCTATGCACAATCGCCTCCCTCAGCCGCAGATTCTGCGCAATCGCCAGACGAATTCTGTGGCGGCGGCTCTGTGTGAACCGTGCGCCAGGGATGGTGGCGGCATTGTCCGGCGAAGATCCCAGCGGTCGAATCGACGGCGGCTGGCACGCGTTAGCGAAACTCATGTTCTTCTGCGGCGGGGGTGAGTCGACTCGGTATTTCAATCTGAGTCAACCGACGTCGGGTCACTTCGCCTGCGAGTCCAGATTCTCCAAGACATCCGGGAGATTCTTCCTGCCAAAGAATTGCCGCCGTGATCTCCTATACATGAGCGATCCGTGCGAGCATCAGGCGGTGGGTGGAGATGAGCATTTAGGGGTTTTCAGAGGGGTATTTCGGGAATTTATGAGGTCAAAGACGAGGGAGTGTCTCGTGAGAAGACAAGCGGCGCTGGAGGAGAAGGTTAGGTGTCCGTATTGCGGAGGGCGCGTGTGGAGCATGACGGCGGCGCGTCTCGTCCCGAAGAGTGCGGCGCGGCGGCTGGGATCACGTGAAGGTGGGTTAGAGTTCTTCGTGTGCGTGAACGGTCACTTGCACGGCACTTGCTGGCTGATTCCGCTTTCATCGGAGGAAGAAGACAATGGAGAAGACGACGACAACAGTGACGGAAGTGTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1900140 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

272

Amino Acids

30.56

Weight (kDa)

9.0

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63060
fragaria_vesca	FvH4_2g23930
malus_domestica	MD03G1268700.v1.1
prunus_persica	Prupe.8G244600_v2.0.a1
pyrus_communis	pycom03g21440
rosa_chinensis	RchiOBHm_Chr6g0291561
rosa_laevigata	RLG00000012107
rosa_multiflora	Rmu_sc0002226.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175970
rosa_rugosa	Rorug06G0220200
rosa_samantha	Rh6AG332600 Rh6BG339400 Rh6CG345700 Rh6DG333000
rosa_wichuraiana	Rw6G028880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	380
Acc16I	TGCGCA	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	144
AccI	GTMKAC	1 cut(s)	347
AccII	CGCG	4 cut(s)	308, 627, 649, 673
AclWI	GGATC	3 cut(s)	269, 467, 691
AcsI	RAATTY	3 cut(s)	56, 210, 539
AcvI	CACGTG	1 cut(s)	689
AcyI	GRCGYC	1 cut(s)	377
AfiI	CCNNNNNNNGG	4 cut(s)	86, 144, 380, 617
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	361
AhdI	GACNNNNNGTC	1 cut(s)	381
AjnI	CCWGG	2 cut(s)	117, 244
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	572, 656
AlwI	GGATC	3 cut(s)	269, 467, 691
AlwNI	CAGNNNCTG	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	85
ApoI	RAATTY	3 cut(s)	56, 210, 539
AspLEI	GCGC	6 cut(s)	197, 244, 589, 627, 649, 673
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	85
BauI	CACGAG	1 cut(s)	569
BbrPI	CACGTG	1 cut(s)	689
BbsI	GAAGAC	4 cut(s)	121, 583, 780, 792
BbvCI	CCTCAGC	1 cut(s)	179
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	5 cut(s)	65, 310, 435, 657, 751
BciT130I	CCWGG	2 cut(s)	119, 246
BcnI	CCSGG	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	572, 656
BfaI	CTAG	1 cut(s)	8
BfoI	RGCGCY	1 cut(s)	590
Bme1390I	CCNGG	3 cut(s)	119, 246, 421
BmeRI	GACNNNNNGTC	1 cut(s)	381
BmeT110I	CYCGRG	1 cut(s)	85
BmrFI	CCNGG	3 cut(s)	119, 246, 421
BmsI	GCATC	1 cut(s)	493
BpiI	GAAGAC	4 cut(s)	121, 583, 780, 792
BpmI	CTGGAG	1 cut(s)	611
Bpu10I	CCTNAGC	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	421
BsaAI	YACGTR	1 cut(s)	689
BsaHI	GRCGYC	1 cut(s)	377
BsaJI	CCNNGG	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 144, 380, 617
BseBI	CCWGG	2 cut(s)	119, 246
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	3 cut(s)	150, 255, 416
BseLI	CCNNNNNNNGG	4 cut(s)	86, 144, 380, 617
BseMII	CTCAG	2 cut(s)	193, 356
BseRI	GAGGAG	1 cut(s)	608
BseYI	CCCAGC	3 cut(s)	144, 278, 679
Bsh1236I	CGCG	4 cut(s)	308, 627, 649, 673
Bsh1285I	CGRYCG	1 cut(s)	286
BsiEI	CGRYCG	1 cut(s)	286
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	267, 420
BslFI	GGGAC	2 cut(s)	161, 641
BslI	CCNNNNNNNGG	4 cut(s)	86, 144, 380, 617
BsmAI	GTCTC	2 cut(s)	572, 656
BsmBI	CGTCTC	1 cut(s)	656
BsmFI	GGGAC	2 cut(s)	161, 641
BsoBI	CYCGRG	1 cut(s)	85
Bsp143I	GATC	5 cut(s)	274, 454, 472, 683, 813
BspCNI	CTCAG	2 cut(s)	192, 357
BspFNI	CGCG	4 cut(s)	308, 627, 649, 673
BspPI	GGATC	3 cut(s)	269, 467, 691
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	5 cut(s)	274, 454, 472, 683, 813
BssNI	GRCGYC	1 cut(s)	377
BssSI	CACGAG	1 cut(s)	569
Bst2BI	CACGAG	1 cut(s)	569
Bst2UI	CCWGG	2 cut(s)	119, 246
Bst4CI	ACNGT	3 cut(s)	239, 725, 800
Bst6I	CTCTTC	1 cut(s)	656
BstACI	GRCGYC	1 cut(s)	377
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	689
BstC8I	GCNNGC	5 cut(s)	302, 306, 394, 482, 746
BstDEI	CTNAG	2 cut(s)	179, 365
BstF5I	GGATG	3 cut(s)	150, 255, 416
BstFNI	CGCG	4 cut(s)	308, 627, 649, 673
BstH2I	RGCGCY	1 cut(s)	590
BstHHI	GCGC	6 cut(s)	197, 244, 589, 627, 649, 673
BstKTI	GATC	5 cut(s)	277, 457, 475, 686, 816
BstMAI	GTCTC	2 cut(s)	572, 656
BstMBI	GATC	5 cut(s)	274, 454, 472, 683, 813
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	5 cut(s)	192, 477, 624, 633, 754
BstNI	CCWGG	2 cut(s)	119, 246
BstSCI	CCNGG	3 cut(s)	117, 244, 419
BstUI	CGCG	4 cut(s)	308, 627, 649, 673
BstV2I	GAAGAC	4 cut(s)	121, 583, 780, 792
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	150, 255, 416
BtsIMutI	CAGTG	1 cut(s)	805
Cac8I	GCNNGC	5 cut(s)	302, 306, 394, 482, 746
CaiI	CAGNNNCTG	1 cut(s)	192
CfoI	GCGC	6 cut(s)	197, 244, 589, 627, 649, 673
CseI	GACGC	1 cut(s)	638
CviAII	CATG	3 cut(s)	322, 466, 637
CviJI	RGCY	7 cut(s)	52, 144, 183, 226, 300, 679, 748
CviKI_1	RGCY	7 cut(s)	52, 144, 183, 226, 300, 679, 748
DdeI	CTNAG	2 cut(s)	179, 365
DpnI	GATC	5 cut(s)	276, 456, 474, 685, 815
DpnII	GATC	5 cut(s)	274, 454, 472, 683, 813
DriI	GACNNNNNGTC	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	656
Eam1105I	GACNNNNNGTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	656
Eco72I	CACGTG	1 cut(s)	689
Eco88I	CYCGRG	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	117, 244
Esp3I	CGTCTC	1 cut(s)	656
FaeI	CATG	3 cut(s)	325, 469, 640
FaiI	YATR	7 cut(s)	101, 163, 323, 463, 467, 545, 638
FaqI	GGGAC	2 cut(s)	161, 641
FatI	CATG	3 cut(s)	321, 465, 636
FauI	CCCGC	1 cut(s)	329
FblI	GTMKAC	1 cut(s)	347
FokI	GGATG	3 cut(s)	137, 262, 403
FspBI	CTAG	1 cut(s)	8
FspI	TGCGCA	1 cut(s)	196
GlaI	GCGC	6 cut(s)	196, 243, 588, 626, 648, 672
GsaI	CCCAGC	3 cut(s)	148, 282, 683
GsuI	CTGGAG	1 cut(s)	611
HaeII	RGCGCY	1 cut(s)	590
HapII	CCGG	2 cut(s)	267, 420
HgaI	GACGC	1 cut(s)	638
HhaI	GCGC	6 cut(s)	197, 244, 589, 627, 649, 673
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	3 cut(s)	325, 469, 640
Hin6I	GCGC	6 cut(s)	195, 242, 587, 625, 647, 671
HinP1I	GCGC	6 cut(s)	195, 242, 587, 625, 647, 671
HincII	GTYRAC	2 cut(s)	348, 371
HindII	GTYRAC	2 cut(s)	348, 371
HpaII	CCGG	2 cut(s)	267, 420
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	4 cut(s)	235, 348, 371, 721
Hpy188I	TCNGA	3 cut(s)	366, 524, 766
Hpy188III	TCNNGA	6 cut(s)	8, 31, 402, 536, 571, 658
Hpy8I	GTNNAC	4 cut(s)	235, 348, 371, 721
Hpy99I	CGWCG	5 cut(s)	29, 296, 379, 382, 794
HpyAV	CCTTC	2 cut(s)	592, 686
HpyCH4III	ACNGT	3 cut(s)	239, 725, 800
HpyCH4IV	ACGT	2 cut(s)	377, 688
HpyCH4V	TGCA	2 cut(s)	165, 733
HpyF10VI	GCNNNNNNNGC	5 cut(s)	192, 477, 624, 633, 754
HpyF3I	CTNAG	2 cut(s)	179, 365
HpySE526I	ACGT	2 cut(s)	377, 688
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	3 cut(s)	325, 469, 640
HspAI	GCGC	6 cut(s)	195, 242, 587, 625, 647, 671
Kzo9I	GATC	5 cut(s)	274, 454, 472, 683, 813
LmnI	GCTCC	1 cut(s)	633
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	2 cut(s)	377, 688
MaeIII	GTNAC	3 cut(s)	383, 725, 800
MalI	GATC	5 cut(s)	276, 456, 474, 685, 815
MboI	GATC	5 cut(s)	274, 454, 472, 683, 813
MflI	RGATCY	1 cut(s)	274
MluCI	AATT	4 cut(s)	56, 210, 442, 539
MluI	ACGCGT	1 cut(s)	306
MlyI	GAGTC	7 cut(s)	79, 123, 143, 343, 353, 376, 407
MnlI	CCTC	9 cut(s)	4, 184, 188, 518, 540, 552, 586, 614, 760
MseI	TTAA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	2 cut(s)	267, 420
MspR9I	CCNGG	3 cut(s)	119, 246, 421
MvaI	CCWGG	2 cut(s)	119, 246
MvnI	CGCG	4 cut(s)	308, 627, 649, 673
MwoI	GCNNNNNNNGC	5 cut(s)	192, 477, 624, 633, 754
NciI	CCSGG	1 cut(s)	421
NdeII	GATC	5 cut(s)	274, 454, 472, 683, 813
NlaIII	CATG	3 cut(s)	325, 469, 640
NmuCI	GTSAC	3 cut(s)	383, 725, 800
NsbI	TGCGCA	1 cut(s)	196
PfeI	GAWTC	6 cut(s)	18, 189, 288, 405, 426, 751
PflMI	CCANNNNNTGG	1 cut(s)	144
PfoI	TCCNGGA	1 cut(s)	419
PleI	GAGTC	7 cut(s)	78, 122, 142, 343, 352, 375, 406
PmaCI	CACGTG	1 cut(s)	689
PmlI	CACGTG	1 cut(s)	689
PpsI	GAGTC	7 cut(s)	78, 122, 142, 343, 352, 375, 406
Ppu21I	YACGTR	1 cut(s)	689
Psp6I	CCWGG	2 cut(s)	117, 244
PspCI	CACGTG	1 cut(s)	689
PspFI	CCCAGC	3 cut(s)	144, 278, 679
PspGI	CCWGG	2 cut(s)	117, 244
PstNI	CAGNNNCTG	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	274
SalI	GTCGAC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	60
Sau3AI	GATC	5 cut(s)	274, 454, 472, 683, 813
SchI	GAGTC	7 cut(s)	79, 123, 143, 343, 353, 376, 407
ScrFI	CCNGG	3 cut(s)	119, 246, 421
SetI	ASST	8 cut(s)	100, 146, 380, 551, 603, 608, 691, 697
SfaNI	GCATC	1 cut(s)	493
Sse9I	AATT	4 cut(s)	56, 210, 442, 539
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	3 cut(s)	117, 244, 419
TaaI	ACNGT	3 cut(s)	239, 725, 800
TaiI	ACGT	2 cut(s)	380, 691
TaqI	TCGA	5 cut(s)	73, 132, 286, 291, 347
TasI	AATT	4 cut(s)	56, 210, 442, 539
TfiI	GAWTC	6 cut(s)	18, 189, 288, 405, 426, 751
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	805
TseFI	GTSAC	3 cut(s)	383, 725, 800
Tsp45I	GTSAC	3 cut(s)	383, 725, 800
TspDTI	ATGAA	2 cut(s)	50, 750
TspGWI	ACGGA	4 cut(s)	13, 465, 600, 819
TspRI	CASTG	1 cut(s)	805
Van91I	CCANNNNNTGG	1 cut(s)	144
XapI	RAATTY	3 cut(s)	56, 210, 539
XbaI	TCTAGA	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	347
XspI	CTAG	1 cut(s)	8
ZraI	GACGTC	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.