Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0016197

Physical Location & Seq

Genomic Coordinates Forward (+)

57185049 .. 57186100

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG339400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAGTGCGAGGCAGCGAGTGAGGGCGAGTCAGGGCTCCGACTCGGGCGAGTTGGGGATTCACAACGAGCGCGTGCTTTATCTCGTCTTCGAGTCCATGAAATGGGACATCCACGCGCTCTGCTCCACCGCCTCTGTCAACCGGAAGCTGCGCGCCGTCGTCAACCGCCTGCTCTGGCGGGAGGTCTGCCTCTACCGCGCGCCGCGGATGACAGCGACCTTGACGAACGGCGCCCTCAACGGGCGGATTGGCGGCGGGTGGCACACGCTCGCCAAGCTCATGTTCTTCTGCTGCGGCTGCAAGCCGACTCGGCATTTCAAGCTGAGTCAACCCACCCCGGGTCACCGGGTCAAGGCGTCGCGGTTCTCGAAGACCTCCGGCCAGAGCTTCCTGTCGAAGAACTGCCGGGGGGACCTGCTCTACGTCAGCGACATGTGCGAGCACCAGACCGGGGATAAGGAGGAGGATCACCTCGGGATCTACCGAGGGGTGTTTCGGGGATTTCACAGGTCGAGGACGATGGCCTGCTTGATCGAGCGGCGGGTGAAGCTGGAGGAGAGCGTCACGTGCCCTTACTGTGGGGCCCGCGTGTGGAGCATGACCGCGGCTCGGCTCGTCCCCAAGAGCGCGGCGCGGCGGCTCGGCTCGCACGACGGGGCGTTGGAGTATTTCGTGTGCGTGAACGGGCACTTGTACGGCAGTTGCTGGCTGGTGCCGTTGTCGTCGGATGAGGATGAGGATGAGGAGGAGGTGGAATATTATTCGGACGGTCGCCGTAGAATTACCTACGACGACCGGACGGCGACGAATGGAAGCCTCGGCTCGATGGGAGAGGAAGTCGTGGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1900140 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

283

Amino Acids

31.93

Weight (kDa)

8.7

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63060
fragaria_vesca	FvH4_2g23930
malus_domestica	MD03G1268700.v1.1
prunus_persica	Prupe.8G244600_v2.0.a1
pyrus_communis	pycom03g21440
rosa_chinensis	RchiOBHm_Chr6g0291561
rosa_laevigata	RLG00000012107
rosa_multiflora	Rmu_sc0002226.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175970
rosa_rugosa	Rorug06G0220200
rosa_samantha	Rh6AG332600 Rh6BG339400 Rh6CG345700 Rh6DG333000
rosa_wichuraiana	Rw6G028880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	423
AccB1I	GGYRCC	2 cut(s)	230, 712
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccBSI	CCGCTC	1 cut(s)	538
AclWI	GGATC	2 cut(s)	474, 485
AcoI	YGGCCR	1 cut(s)	379
AcvI	CACGTG	1 cut(s)	567
AcyI	GRCGYC	2 cut(s)	231, 356
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	8 cut(s)	102, 240, 338, 352, 451, 578, 591, 609
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	5 cut(s)	148, 277, 322, 387, 550
AluI	AGCT	5 cut(s)	148, 277, 322, 387, 550
Alw21I	GWGCWC	1 cut(s)	444
AlwI	GGATC	2 cut(s)	474, 485
AlwNI	CAGNNNCTG	1 cut(s)	705
Ama87I	CYCGRG	3 cut(s)	43, 337, 473
AoxI	GGCC	3 cut(s)	379, 522, 582
ApaI	GGGCCC	1 cut(s)	586
ApeKI	GCWGC	4 cut(s)	13, 148, 291, 297
AspLEI	GCGC	9 cut(s)	72, 118, 153, 155, 200, 202, 233, 629, 634
AspS9I	GGNCC	3 cut(s)	412, 582, 583
AsuC2I	CCSGG	5 cut(s)	338, 339, 347, 407, 451
AsuHPI	GGTGA	3 cut(s)	335, 461, 556
AvaI	CYCGRG	3 cut(s)	43, 337, 473
AvaII	GGWCC	1 cut(s)	412
BaeGI	GKGCMC	3 cut(s)	572, 586, 690
BanI	GGYRCC	2 cut(s)	230, 712
BanII	GRGCYC	2 cut(s)	38, 586
BbrPI	CACGTG	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	79, 377
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	4 cut(s)	25, 135, 278, 284
BccI	CCATC	2 cut(s)	514, 820
BceAI	ACGGC	6 cut(s)	140, 244, 700, 712, 759, 816
BcnI	CCSGG	5 cut(s)	338, 339, 347, 407, 451
BfaI	CTAG	1 cut(s)	850
BfoI	RGCGCY	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	423
BglI	GCCNNNNNGGC	1 cut(s)	310
Bme1390I	CCNGG	5 cut(s)	338, 339, 347, 407, 451
Bme18I	GGWCC	1 cut(s)	412
BmeT110I	CYCGRG	3 cut(s)	43, 337, 473
BmgT120I	GGNCC	3 cut(s)	412, 582, 583
BmiI	GGNNCC	6 cut(s)	37, 232, 413, 583, 584, 714
BmrFI	CCNGG	5 cut(s)	338, 339, 347, 407, 451
BpiI	GAAGAC	2 cut(s)	79, 377
BpmI	CTGGAG	1 cut(s)	572
BpuMI	CCSGG	5 cut(s)	338, 339, 347, 407, 451
BsaAI	YACGTR	1 cut(s)	567
BsaHI	GRCGYC	2 cut(s)	231, 356
BsaJI	CCNNGG	9 cut(s)	203, 336, 337, 406, 450, 472, 484, 603, 817
BsaWI	WCCGGW	2 cut(s)	141, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bsc4I	CCNNNNNNNGG	8 cut(s)	102, 240, 338, 352, 451, 578, 591, 609
BseDI	CCNNGG	9 cut(s)	203, 336, 337, 406, 450, 472, 484, 603, 817
BseGI	GGATG	5 cut(s)	108, 213, 733, 739, 745
BseLI	CCNNNNNNNGG	8 cut(s)	102, 240, 338, 352, 451, 578, 591, 609
BseMII	CTCAG	1 cut(s)	314
BsePI	GCGCGC	2 cut(s)	151, 198
BseRI	GAGGAG	4 cut(s)	476, 569, 758, 761
BseSI	GKGCMC	3 cut(s)	572, 586, 690
BseXI	GCAGC	4 cut(s)	25, 135, 278, 284
Bsh1285I	CGRYCG	2 cut(s)	772, 796
BshFI	GGCC	3 cut(s)	381, 524, 584
BshNI	GGYRCC	2 cut(s)	230, 712
BsiEI	CGRYCG	2 cut(s)	772, 796
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	3 cut(s)	43, 337, 473
BsiSI	CCGG	7 cut(s)	142, 338, 346, 378, 406, 450, 796
BslFI	GGGAC	3 cut(s)	119, 425, 602
BslI	CCNNNNNNNGG	8 cut(s)	102, 240, 338, 352, 451, 578, 591, 609
BsmFI	GGGAC	3 cut(s)	119, 425, 602
BsnI	GGCC	3 cut(s)	381, 524, 584
BsoBI	CYCGRG	3 cut(s)	43, 337, 473
Bsp120I	GGGCCC	1 cut(s)	582
Bsp1286I	GDGCHC	5 cut(s)	38, 444, 572, 586, 690
Bsp143I	GATC	3 cut(s)	466, 477, 531
BspANI	GGCC	3 cut(s)	381, 524, 584
BspCNI	CTCAG	1 cut(s)	315
BspLI	GGNNCC	6 cut(s)	37, 232, 413, 583, 584, 714
BspMI	ACCTGC	1 cut(s)	423
BspPI	GGATC	2 cut(s)	474, 485
BspT107I	GGYRCC	2 cut(s)	230, 712
BsrBI	CCGCTC	1 cut(s)	538
BssECI	CCNNGG	9 cut(s)	203, 336, 337, 406, 450, 472, 484, 603, 817
BssHII	GCGCGC	2 cut(s)	151, 198
BssMI	GATC	3 cut(s)	466, 477, 531
BssNI	GRCGYC	2 cut(s)	231, 356
Bst4CI	ACNGT	2 cut(s)	578, 770
BstACI	GRCGYC	2 cut(s)	231, 356
BstBAI	YACGTR	1 cut(s)	567
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	2 cut(s)	203, 603
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	5 cut(s)	108, 213, 733, 739, 745
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	9 cut(s)	72, 118, 153, 155, 200, 202, 233, 629, 634
BstKTI	GATC	3 cut(s)	469, 480, 534
BstMBI	GATC	3 cut(s)	466, 477, 531
BstMCI	CGRYCG	2 cut(s)	772, 796
BstNSI	RCATGY	1 cut(s)	436
BstPI	GGTNACC	1 cut(s)	341
BstSCI	CCNGG	5 cut(s)	336, 337, 345, 405, 449
BstSLI	GKGCMC	3 cut(s)	572, 586, 690
BstV1I	GCAGC	4 cut(s)	25, 135, 278, 284
BstV2I	GAAGAC	2 cut(s)	79, 377
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	381, 524, 584
BtgI	CCRYGG	2 cut(s)	203, 603
BtsCI	GGATG	5 cut(s)	108, 213, 733, 739, 745
BveI	ACCTGC	1 cut(s)	423
CaiI	CAGNNNCTG	1 cut(s)	705
CfoI	GCGC	9 cut(s)	72, 118, 153, 155, 200, 202, 233, 629, 634
Cfr13I	GGNCC	3 cut(s)	412, 582, 583
Cfr42I	CCGCGG	2 cut(s)	206, 606
Cfr9I	CCCGGG	1 cut(s)	337
CseI	GACGC	2 cut(s)	345, 550
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	4 cut(s)	97, 280, 433, 598
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	1 cut(s)	323
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	3 cut(s)	468, 479, 533
DpnII	GATC	3 cut(s)	466, 477, 531
EaeI	YGGCCR	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	38, 586
Eco47I	GGWCC	1 cut(s)	412
Eco72I	CACGTG	1 cut(s)	567
Eco88I	CYCGRG	3 cut(s)	43, 337, 473
Eco91I	GGTNACC	1 cut(s)	341
EcoO109I	RGGNCCY	2 cut(s)	412, 582
EcoO65I	GGTNACC	1 cut(s)	341
EcoT38I	GRGCYC	2 cut(s)	38, 586
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaeI	CATG	4 cut(s)	100, 283, 436, 601
FaiI	YATR	4 cut(s)	98, 281, 434, 599
FaqI	GGGAC	3 cut(s)	119, 425, 602
FatI	CATG	4 cut(s)	96, 279, 432, 597
FauI	CCCGC	4 cut(s)	171, 248, 534, 593
FokI	GGATG	5 cut(s)	95, 220, 740, 746, 752
FriOI	GRGCYC	2 cut(s)	38, 586
FspBI	CTAG	1 cut(s)	850
GlaI	GCGC	9 cut(s)	71, 117, 152, 154, 199, 201, 232, 628, 633
GsuI	CTGGAG	1 cut(s)	572
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	381, 524, 584
HapII	CCGG	7 cut(s)	142, 338, 346, 378, 406, 450, 796
HgaI	GACGC	2 cut(s)	345, 550
HhaI	GCGC	9 cut(s)	72, 118, 153, 155, 200, 202, 233, 629, 634
Hin1I	GRCGYC	2 cut(s)	231, 356
Hin1II	CATG	4 cut(s)	100, 283, 436, 601
Hin6I	GCGC	9 cut(s)	70, 116, 151, 153, 198, 200, 231, 627, 632
HinP1I	GCGC	9 cut(s)	70, 116, 151, 153, 198, 200, 231, 627, 632
HincII	GTYRAC	3 cut(s)	139, 163, 329
HindII	GTYRAC	3 cut(s)	139, 163, 329
HinfI	GANTC	6 cut(s)	28, 41, 58, 92, 307, 325
HpaII	CCGG	7 cut(s)	142, 338, 346, 378, 406, 450, 796
HphI	GGTGA	3 cut(s)	335, 461, 556
Hpy166II	GTNNAC	4 cut(s)	139, 163, 329, 682
Hpy188I	TCNGA	3 cut(s)	40, 727, 766
Hpy188III	TCNNGA	2 cut(s)	367, 475
Hpy8I	GTNNAC	4 cut(s)	139, 163, 329, 682
Hpy99I	CGWCG	6 cut(s)	161, 361, 656, 727, 794, 808
HpyCH4III	ACNGT	2 cut(s)	578, 770
HpyCH4IV	ACGT	2 cut(s)	423, 566
HpyCH4V	TGCA	1 cut(s)	300
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	2 cut(s)	423, 566
Hsp92I	GRCGYC	2 cut(s)	231, 356
Hsp92II	CATG	4 cut(s)	100, 283, 436, 601
HspAI	GCGC	9 cut(s)	70, 116, 151, 153, 198, 200, 231, 627, 632
KasI	GGCGCC	1 cut(s)	230
KspI	CCGCGG	2 cut(s)	206, 606
Kzo9I	GATC	3 cut(s)	466, 477, 531
LmnI	GCTCC	3 cut(s)	41, 128, 594
Lsp1109I	GCAGC	4 cut(s)	25, 135, 278, 284
MaeI	CTAG	1 cut(s)	850
MaeII	ACGT	2 cut(s)	423, 566
MaeIII	GTNAC	2 cut(s)	341, 562
MalI	GATC	3 cut(s)	468, 479, 533
MbiI	CCGCTC	1 cut(s)	538
MboI	GATC	3 cut(s)	466, 477, 531
MboII	GAAGA	4 cut(s)	79, 277, 382, 409
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	5 cut(s)	38, 444, 572, 586, 690
MluCI	AATT	1 cut(s)	780
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	5 cut(s)	35, 37, 101, 301, 334
MmeI	TCCRAC	3 cut(s)	63, 642, 705
MspA1I	CMGCKG	2 cut(s)	205, 605
MspI	CCGG	7 cut(s)	142, 338, 346, 378, 406, 450, 796
MspR9I	CCNGG	5 cut(s)	338, 339, 347, 407, 451
MteI	GCGCNGCGC	1 cut(s)	630
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	5 cut(s)	338, 339, 347, 407, 451
NdeII	GATC	3 cut(s)	466, 477, 531
NlaIII	CATG	4 cut(s)	100, 283, 436, 601
NlaIV	GGNNCC	6 cut(s)	37, 232, 413, 583, 584, 714
NmeAIII	GCCGAG	4 cut(s)	289, 589, 621, 798
NmuCI	GTSAC	2 cut(s)	341, 562
NspI	RCATGY	1 cut(s)	436
PauI	GCGCGC	2 cut(s)	151, 198
PciI	ACATGT	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	2 cut(s)	365, 648
PfeI	GAWTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	102
PleI	GAGTC	5 cut(s)	35, 36, 100, 301, 333
PluTI	GGCGCC	1 cut(s)	234
PmaCI	CACGTG	1 cut(s)	567
PmlI	CACGTG	1 cut(s)	567
PpsI	GAGTC	5 cut(s)	35, 36, 100, 301, 333
Ppu21I	YACGTR	1 cut(s)	567
PpuMI	RGGWCCY	1 cut(s)	412
PscI	ACATGT	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	412
PspCI	CACGTG	1 cut(s)	567
PspEI	GGTNACC	1 cut(s)	341
PspN4I	GGNNCC	6 cut(s)	37, 232, 413, 583, 584, 714
PspOMI	GGGCCC	1 cut(s)	582
PspPI	GGNCC	3 cut(s)	412, 582, 583
PspPPI	RGGWCCY	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	705
PsuI	RGATCY	1 cut(s)	477
PteI	GCGCGC	2 cut(s)	151, 198
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
SacII	CCGCGG	2 cut(s)	206, 606
Sau3AI	GATC	3 cut(s)	466, 477, 531
Sau96I	GGNCC	3 cut(s)	412, 582, 583
SchI	GAGTC	5 cut(s)	35, 37, 101, 301, 334
ScrFI	CCNGG	5 cut(s)	338, 339, 347, 407, 451
SduI	GDGCHC	5 cut(s)	38, 444, 572, 586, 690
SfoI	GGCGCC	1 cut(s)	232
Sfr303I	CCGCGG	2 cut(s)	206, 606
SgrBI	CCGCGG	2 cut(s)	206, 606
SinI	GGWCC	1 cut(s)	412
SmaI	CCCGGG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	780
SspDI	GGCGCC	1 cut(s)	230
SspI	AATATT	1 cut(s)	758
SspMI	CTAG	1 cut(s)	850
StyD4I	CCNGG	5 cut(s)	336, 337, 345, 405, 449
TaaI	ACNGT	2 cut(s)	578, 770
TaiI	ACGT	2 cut(s)	426, 569
TaqI	TCGA	6 cut(s)	90, 368, 395, 512, 534, 824
TasI	AATT	1 cut(s)	780
TauI	GCSGC	8 cut(s)	205, 255, 297, 541, 608, 632, 637, 640
TfiI	GAWTC	1 cut(s)	58
TseFI	GTSAC	2 cut(s)	341, 562
TseI	GCWGC	4 cut(s)	13, 148, 291, 297
Tsp45I	GTSAC	2 cut(s)	341, 562
TspDTI	ATGAA	1 cut(s)	113
TspMI	CCCGGG	1 cut(s)	337
Van91I	CCANNNNNTGG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	412
XceI	RCATGY	1 cut(s)	436
XmaI	CCCGGG	1 cut(s)	337
XspI	CTAG	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.