Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016197

Physical Location & Seq

Genomic Coordinates Forward (+)

53796821 .. 53797669

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG333000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGAGTGCGAGGCAGCGAGTGAGGGCGAGTGAGGGCTCCGACTCGGGCGAGTTGGGGATTCACAACGAGCGCGTGCTTTATCTCGTCTTCGAGTCCATGAAATGGGACATCCACGCGCTCTGCTCCACCGCCTCTGTCAACCGGAAGCTGCGCGCCGTCGTCAACCGCCTGCTCTGGCGGGAGGTCTGCCTCTACCGCGCGCCGCGGATGACAGCGACCTTGACGAACGGCGCCCTCAACGGGCGGATCGGCGGCGGGTGGCACACGCTCGCCAAGCTCATGTTCTTCTGCTGCGGCTGCAAGCCGACTCGGCATTTCAAGCTGAGTCAACCCACCCCGGGTCACCGGGTCAAGGCGTCGCGGTTCTCGAAGACCTCCGGCCAGAGCTTCCTGTCGAAGAACTGCCGGGGGGACCTGCTCTACGTCAGCGACATGTGCGAGCACCAGACCGGGGATAAGGAGGAGGATCACCTCGGGATCTACCGAGGGGTGTTTCGGGGATTTCACAGGTCGAGGACGATGGCCTGCTTGATCGAGCGGCGGGTGAAGCTGGAGGAGAGCGTCATGTGCCCTTACTGTGGGGCCCGCGTGTGGAGCATGACCGCGGCTCGGCTCGTCCCCAAGAGCGCGGCGCGGCGGCTCGGCTCGCACGACGGGGCGTTGGAGTATTTCGTGTGCGTGAACGGGCACTTGTACGGCAGTTGCTGGCTGGTGCCGTTGTCGTCGGATGAGGATGAGGATGAGGAGGTGGAATATTATTCGGACGGTCGCCGTAAAATTACCTACGACGACCGGACGGCGACGAATGGAAGCCTCGGCTCGATGGGAGAGGAAGTTGTGGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009791 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1900140 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

282

Amino Acids

31.81

Weight (kDa)

8.7

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016197)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63060
fragaria_vesca	FvH4_2g23930
malus_domestica	MD03G1268700.v1.1
prunus_persica	Prupe.8G244600_v2.0.a1
pyrus_communis	pycom03g21440
rosa_chinensis	RchiOBHm_Chr6g0291561
rosa_laevigata	RLG00000012107
rosa_multiflora	Rmu_sc0002226.1_g000003
rosa_roxburghii	Rroxscaffold_7G00175970
rosa_rugosa	Rorug06G0220200
rosa_samantha	Rh6AG332600 Rh6BG339400 Rh6CG345700 Rh6DG333000
rosa_wichuraiana	Rw6G028880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	423
AccB1I	GGYRCC	2 cut(s)	230, 712
AccB7I	CCANNNNNTGG	1 cut(s)	102
AccBSI	CCGCTC	1 cut(s)	538
AclWI	GGATC	3 cut(s)	254, 474, 485
AcoI	YGGCCR	1 cut(s)	379
AcyI	GRCGYC	2 cut(s)	231, 356
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	8 cut(s)	102, 240, 338, 352, 451, 578, 591, 609
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	5 cut(s)	148, 277, 322, 387, 550
AluI	AGCT	5 cut(s)	148, 277, 322, 387, 550
Alw21I	GWGCWC	1 cut(s)	444
AlwI	GGATC	3 cut(s)	254, 474, 485
AlwNI	CAGNNNCTG	1 cut(s)	705
Ama87I	CYCGRG	3 cut(s)	43, 337, 473
AoxI	GGCC	3 cut(s)	379, 522, 582
ApaI	GGGCCC	1 cut(s)	586
ApeKI	GCWGC	4 cut(s)	13, 148, 291, 297
AspLEI	GCGC	9 cut(s)	72, 118, 153, 155, 200, 202, 233, 629, 634
AspS9I	GGNCC	3 cut(s)	412, 582, 583
AsuC2I	CCSGG	5 cut(s)	338, 339, 347, 407, 451
AsuHPI	GGTGA	3 cut(s)	335, 461, 556
AvaI	CYCGRG	3 cut(s)	43, 337, 473
AvaII	GGWCC	1 cut(s)	412
BaeGI	GKGCMC	3 cut(s)	572, 586, 690
BanI	GGYRCC	2 cut(s)	230, 712
BanII	GRGCYC	2 cut(s)	38, 586
BbsI	GAAGAC	2 cut(s)	79, 377
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	4 cut(s)	25, 135, 278, 284
BccI	CCATC	2 cut(s)	514, 817
BceAI	ACGGC	6 cut(s)	140, 244, 700, 712, 756, 813
BcnI	CCSGG	5 cut(s)	338, 339, 347, 407, 451
BfaI	CTAG	1 cut(s)	847
BfoI	RGCGCY	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	423
BglI	GCCNNNNNGGC	1 cut(s)	310
Bme1390I	CCNGG	5 cut(s)	338, 339, 347, 407, 451
Bme18I	GGWCC	1 cut(s)	412
BmeT110I	CYCGRG	3 cut(s)	43, 337, 473
BmgT120I	GGNCC	3 cut(s)	412, 582, 583
BmiI	GGNNCC	6 cut(s)	37, 232, 413, 583, 584, 714
BmrFI	CCNGG	5 cut(s)	338, 339, 347, 407, 451
BpiI	GAAGAC	2 cut(s)	79, 377
BpmI	CTGGAG	1 cut(s)	572
BpuMI	CCSGG	5 cut(s)	338, 339, 347, 407, 451
BsaHI	GRCGYC	2 cut(s)	231, 356
BsaJI	CCNNGG	9 cut(s)	203, 336, 337, 406, 450, 472, 484, 603, 814
BsaWI	WCCGGW	2 cut(s)	141, 792
BsaXI	ACNNNNNCTCC	2 cut(s)	819, 849
Bsc4I	CCNNNNNNNGG	8 cut(s)	102, 240, 338, 352, 451, 578, 591, 609
BseDI	CCNNGG	9 cut(s)	203, 336, 337, 406, 450, 472, 484, 603, 814
BseGI	GGATG	5 cut(s)	108, 213, 733, 739, 745
BseLI	CCNNNNNNNGG	8 cut(s)	102, 240, 338, 352, 451, 578, 591, 609
BseMII	CTCAG	1 cut(s)	314
BsePI	GCGCGC	2 cut(s)	151, 198
BseRI	GAGGAG	3 cut(s)	476, 569, 758
BseSI	GKGCMC	3 cut(s)	572, 586, 690
BseXI	GCAGC	4 cut(s)	25, 135, 278, 284
Bsh1285I	CGRYCG	2 cut(s)	769, 793
BshFI	GGCC	3 cut(s)	381, 524, 584
BshNI	GGYRCC	2 cut(s)	230, 712
BsiEI	CGRYCG	2 cut(s)	769, 793
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	3 cut(s)	43, 337, 473
BsiSI	CCGG	7 cut(s)	142, 338, 346, 378, 406, 450, 793
BslFI	GGGAC	3 cut(s)	119, 425, 602
BslI	CCNNNNNNNGG	8 cut(s)	102, 240, 338, 352, 451, 578, 591, 609
BsmFI	GGGAC	3 cut(s)	119, 425, 602
BsnI	GGCC	3 cut(s)	381, 524, 584
BsoBI	CYCGRG	3 cut(s)	43, 337, 473
Bsp120I	GGGCCC	1 cut(s)	582
Bsp1286I	GDGCHC	5 cut(s)	38, 444, 572, 586, 690
Bsp143I	GATC	4 cut(s)	246, 466, 477, 531
BspANI	GGCC	3 cut(s)	381, 524, 584
BspCNI	CTCAG	1 cut(s)	315
BspLI	GGNNCC	6 cut(s)	37, 232, 413, 583, 584, 714
BspMI	ACCTGC	1 cut(s)	423
BspPI	GGATC	3 cut(s)	254, 474, 485
BspT107I	GGYRCC	2 cut(s)	230, 712
BsrBI	CCGCTC	1 cut(s)	538
BssECI	CCNNGG	9 cut(s)	203, 336, 337, 406, 450, 472, 484, 603, 814
BssHII	GCGCGC	2 cut(s)	151, 198
BssMI	GATC	4 cut(s)	246, 466, 477, 531
BssNI	GRCGYC	2 cut(s)	231, 356
Bst4CI	ACNGT	2 cut(s)	578, 767
BstACI	GRCGYC	2 cut(s)	231, 356
BstDEI	CTNAG	1 cut(s)	323
BstDSI	CCRYGG	2 cut(s)	203, 603
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	5 cut(s)	108, 213, 733, 739, 745
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	9 cut(s)	72, 118, 153, 155, 200, 202, 233, 629, 634
BstKTI	GATC	4 cut(s)	249, 469, 480, 534
BstMBI	GATC	4 cut(s)	246, 466, 477, 531
BstMCI	CGRYCG	2 cut(s)	769, 793
BstNSI	RCATGY	1 cut(s)	436
BstPI	GGTNACC	1 cut(s)	341
BstSCI	CCNGG	5 cut(s)	336, 337, 345, 405, 449
BstSLI	GKGCMC	3 cut(s)	572, 586, 690
BstV1I	GCAGC	4 cut(s)	25, 135, 278, 284
BstV2I	GAAGAC	2 cut(s)	79, 377
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	381, 524, 584
BtgI	CCRYGG	2 cut(s)	203, 603
BtsCI	GGATG	5 cut(s)	108, 213, 733, 739, 745
BveI	ACCTGC	1 cut(s)	423
CaiI	CAGNNNCTG	1 cut(s)	705
CfoI	GCGC	9 cut(s)	72, 118, 153, 155, 200, 202, 233, 629, 634
Cfr13I	GGNCC	3 cut(s)	412, 582, 583
Cfr42I	CCGCGG	2 cut(s)	206, 606
Cfr9I	CCCGGG	1 cut(s)	337
CseI	GACGC	2 cut(s)	345, 550
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	5 cut(s)	97, 280, 433, 565, 598
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	1 cut(s)	323
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	4 cut(s)	248, 468, 479, 533
DpnII	GATC	4 cut(s)	246, 466, 477, 531
EaeI	YGGCCR	1 cut(s)	379
EciI	GGCGGA	1 cut(s)	259
Eco24I	GRGCYC	2 cut(s)	38, 586
Eco47I	GGWCC	1 cut(s)	412
Eco88I	CYCGRG	3 cut(s)	43, 337, 473
Eco91I	GGTNACC	1 cut(s)	341
EcoO109I	RGGNCCY	2 cut(s)	412, 582
EcoO65I	GGTNACC	1 cut(s)	341
EcoT38I	GRGCYC	2 cut(s)	38, 586
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaeI	CATG	5 cut(s)	100, 283, 436, 568, 601
FaiI	YATR	5 cut(s)	98, 281, 434, 566, 599
FaqI	GGGAC	3 cut(s)	119, 425, 602
FatI	CATG	5 cut(s)	96, 279, 432, 564, 597
FauI	CCCGC	4 cut(s)	171, 248, 534, 593
FokI	GGATG	5 cut(s)	95, 220, 740, 746, 752
FriOI	GRGCYC	2 cut(s)	38, 586
FspBI	CTAG	1 cut(s)	847
GlaI	GCGC	9 cut(s)	71, 117, 152, 154, 199, 201, 232, 628, 633
GsuI	CTGGAG	1 cut(s)	572
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	381, 524, 584
HapII	CCGG	7 cut(s)	142, 338, 346, 378, 406, 450, 793
HgaI	GACGC	2 cut(s)	345, 550
HhaI	GCGC	9 cut(s)	72, 118, 153, 155, 200, 202, 233, 629, 634
Hin1I	GRCGYC	2 cut(s)	231, 356
Hin1II	CATG	5 cut(s)	100, 283, 436, 568, 601
Hin6I	GCGC	9 cut(s)	70, 116, 151, 153, 198, 200, 231, 627, 632
HinP1I	GCGC	9 cut(s)	70, 116, 151, 153, 198, 200, 231, 627, 632
HincII	GTYRAC	3 cut(s)	139, 163, 329
HindII	GTYRAC	3 cut(s)	139, 163, 329
HinfI	GANTC	5 cut(s)	41, 58, 92, 307, 325
HpaII	CCGG	7 cut(s)	142, 338, 346, 378, 406, 450, 793
HphI	GGTGA	3 cut(s)	335, 461, 556
Hpy166II	GTNNAC	4 cut(s)	139, 163, 329, 682
Hpy188I	TCNGA	3 cut(s)	40, 727, 763
Hpy188III	TCNNGA	2 cut(s)	367, 475
Hpy8I	GTNNAC	4 cut(s)	139, 163, 329, 682
Hpy99I	CGWCG	6 cut(s)	161, 361, 656, 727, 791, 805
HpyCH4III	ACNGT	2 cut(s)	578, 767
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	1 cut(s)	300
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	2 cut(s)	231, 356
Hsp92II	CATG	5 cut(s)	100, 283, 436, 568, 601
HspAI	GCGC	9 cut(s)	70, 116, 151, 153, 198, 200, 231, 627, 632
KasI	GGCGCC	1 cut(s)	230
KspI	CCGCGG	2 cut(s)	206, 606
Kzo9I	GATC	4 cut(s)	246, 466, 477, 531
LmnI	GCTCC	3 cut(s)	41, 128, 594
Lsp1109I	GCAGC	4 cut(s)	25, 135, 278, 284
MaeI	CTAG	1 cut(s)	847
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	4 cut(s)	248, 468, 479, 533
MbiI	CCGCTC	1 cut(s)	538
MboI	GATC	4 cut(s)	246, 466, 477, 531
MboII	GAAGA	4 cut(s)	79, 277, 382, 409
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	5 cut(s)	38, 444, 572, 586, 690
MluCI	AATT	1 cut(s)	777
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	4 cut(s)	35, 101, 301, 334
MmeI	TCCRAC	3 cut(s)	63, 642, 705
MspA1I	CMGCKG	2 cut(s)	205, 605
MspI	CCGG	7 cut(s)	142, 338, 346, 378, 406, 450, 793
MspR9I	CCNGG	5 cut(s)	338, 339, 347, 407, 451
MteI	GCGCNGCGC	1 cut(s)	630
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	5 cut(s)	338, 339, 347, 407, 451
NdeII	GATC	4 cut(s)	246, 466, 477, 531
NlaIII	CATG	5 cut(s)	100, 283, 436, 568, 601
NlaIV	GGNNCC	6 cut(s)	37, 232, 413, 583, 584, 714
NmeAIII	GCCGAG	4 cut(s)	289, 589, 621, 795
NmuCI	GTSAC	1 cut(s)	341
NspI	RCATGY	1 cut(s)	436
PauI	GCGCGC	2 cut(s)	151, 198
PciI	ACATGT	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	2 cut(s)	365, 648
PfeI	GAWTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	102
PleI	GAGTC	4 cut(s)	35, 100, 301, 333
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	4 cut(s)	35, 100, 301, 333
PpuMI	RGGWCCY	1 cut(s)	412
PscI	ACATGT	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	412
PspEI	GGTNACC	1 cut(s)	341
PspN4I	GGNNCC	6 cut(s)	37, 232, 413, 583, 584, 714
PspOMI	GGGCCC	1 cut(s)	582
PspPI	GGNCC	3 cut(s)	412, 582, 583
PspPPI	RGGWCCY	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	705
PsuI	RGATCY	1 cut(s)	477
PteI	GCGCGC	2 cut(s)	151, 198
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
SacII	CCGCGG	2 cut(s)	206, 606
Sau3AI	GATC	4 cut(s)	246, 466, 477, 531
Sau96I	GGNCC	3 cut(s)	412, 582, 583
SchI	GAGTC	4 cut(s)	35, 101, 301, 334
ScrFI	CCNGG	5 cut(s)	338, 339, 347, 407, 451
SduI	GDGCHC	5 cut(s)	38, 444, 572, 586, 690
SfoI	GGCGCC	1 cut(s)	232
Sfr303I	CCGCGG	2 cut(s)	206, 606
SgrBI	CCGCGG	2 cut(s)	206, 606
SinI	GGWCC	1 cut(s)	412
SmaI	CCCGGG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	777
SspDI	GGCGCC	1 cut(s)	230
SspI	AATATT	1 cut(s)	755
SspMI	CTAG	1 cut(s)	847
StyD4I	CCNGG	5 cut(s)	336, 337, 345, 405, 449
TaaI	ACNGT	2 cut(s)	578, 767
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	6 cut(s)	90, 368, 395, 512, 534, 821
TasI	AATT	1 cut(s)	777
TauI	GCSGC	8 cut(s)	205, 255, 297, 541, 608, 632, 637, 640
TfiI	GAWTC	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	4 cut(s)	13, 148, 291, 297
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	1 cut(s)	113
TspMI	CCCGGG	1 cut(s)	337
Van91I	CCANNNNNTGG	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	412
XceI	RCATGY	1 cut(s)	436
XmaI	CCCGGG	1 cut(s)	337
XspI	CTAG	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.